Wall clock time and date at job start Sat Apr 11 2020 06:35:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50706 * 119.99890 * 2 1
4 4 C 1.52998 * 109.46966 * 240.00031 * 3 2 1
5 5 O 1.42899 * 109.46816 * 359.97438 * 3 2 1
6 6 C 1.52994 * 109.47230 * 120.00044 * 3 2 1
7 7 C 1.50698 * 109.47425 * 179.97438 * 6 3 2
8 8 O 1.21282 * 119.99364 * 0.02562 * 7 6 3
9 9 N 1.34774 * 120.00600 * 179.97438 * 7 6 3
10 10 C 1.46496 * 120.00099 * 180.02562 * 9 7 6
11 11 H 1.08994 * 112.91109 * 23.75176 * 10 9 7
12 12 C 1.53787 * 113.61210 * 155.00440 * 10 9 7
13 13 C 1.53779 * 87.07963 * 139.97940 * 12 10 9
14 14 H 1.08999 * 113.61062 * 219.93155 * 13 12 10
15 15 N 1.46502 * 113.61301 * 89.11687 * 13 12 10
16 16 C 1.34783 * 119.99683 * 154.99921 * 15 13 12
17 17 O 1.21278 * 120.00208 * 359.97438 * 16 15 13
18 18 C 1.50705 * 119.99542 * 179.97438 * 16 15 13
19 19 S 1.81004 * 109.46637 * 179.97438 * 18 16 15
20 20 C 1.76201 * 99.99733 * 180.02562 * 19 18 16
21 21 H 1.08007 * 120.00061 * 0.02562 * 20 19 18
22 22 C 1.38801 * 119.99998 * 180.02562 * 20 19 18
23 23 N 1.31628 * 120.00129 * 359.97438 * 22 20 19
24 24 Si 1.86802 * 119.99760 * 179.97438 * 22 20 19
25 25 H 1.48503 * 109.47151 * 60.00358 * 24 22 20
26 26 H 1.48506 * 109.46883 * 179.97438 * 24 22 20
27 27 H 1.48491 * 109.47455 * 300.00080 * 24 22 20
28 28 C 1.53779 * 87.08402 * 334.56577 * 13 12 10
29 29 H 1.07999 * 119.99666 * 180.02562 * 1 2 3
30 30 H 1.08000 * 120.00101 * 0.02562 * 1 2 3
31 31 H 1.08000 * 120.00101 * 179.97438 * 2 1 3
32 32 H 1.08999 * 109.47041 * 300.00384 * 4 3 2
33 33 H 1.09001 * 109.47082 * 60.00205 * 4 3 2
34 34 H 1.09004 * 109.47223 * 179.97438 * 4 3 2
35 35 H 0.96696 * 114.00170 * 60.00283 * 5 3 2
36 36 H 1.09005 * 109.47394 * 59.99923 * 6 3 2
37 37 H 1.09008 * 109.47254 * 300.00034 * 6 3 2
38 38 H 0.97002 * 119.99411 * 0.02562 * 9 7 6
39 39 H 1.08997 * 113.61028 * 254.52900 * 12 10 9
40 40 H 1.09000 * 113.61529 * 25.43039 * 12 10 9
41 41 H 0.96996 * 120.00397 * 334.99617 * 15 13 12
42 42 H 1.08994 * 109.47112 * 299.99738 * 18 16 15
43 43 H 1.08996 * 109.46796 * 60.00107 * 18 16 15
44 44 H 0.96994 * 119.99821 * 180.02562 * 23 22 20
45 45 H 1.09002 * 113.61557 * 270.88569 * 28 13 12
46 46 H 1.09004 * 113.61501 * 139.97990 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 6 2.9431 1.3862 -1.2492
5 8 1.1348 2.3912 -0.0006
6 6 2.9431 1.3863 1.2492
7 6 3.6971 2.6911 1.2489
8 8 3.5453 3.4788 0.3393
9 7 4.5391 2.9831 2.2599
10 6 5.2716 4.2518 2.2598
11 1 4.7827 5.0240 1.6658
12 6 5.6856 4.7242 3.6635
13 6 7.0200 5.1619 3.0368
14 1 7.8862 4.9540 3.6649
15 7 7.0052 6.5342 2.5240
16 6 8.1568 7.2265 2.4187
17 8 9.2051 6.7137 2.7488
18 6 8.1417 8.6380 1.8906
19 16 9.8291 9.2928 1.8711
20 6 9.5239 10.9055 1.2303
21 1 8.5164 11.2073 0.9845
22 6 10.5783 11.7882 1.0413
23 7 11.8061 11.4206 1.3412
24 14 10.2548 13.4976 0.3612
25 1 9.3355 14.2267 1.2715
26 1 11.5372 14.2392 0.2557
27 1 9.6348 13.3863 -0.9835
28 6 6.7711 4.0974 1.9553
29 1 -0.5399 -0.9353 0.0004
30 1 -0.5400 0.9353 -0.0004
31 1 1.8500 -0.9353 0.0004
32 1 3.6514 0.5577 -1.2493
33 1 2.3164 1.3285 -2.1392
34 1 3.4878 2.3304 -1.2495
35 1 0.5433 2.4033 0.7642
36 1 3.6515 0.5578 1.2492
37 1 2.3164 1.3285 2.1393
38 1 4.6601 2.3532 2.9875
39 1 5.0867 5.5537 4.0393
40 1 5.7872 3.9133 4.3848
41 1 6.1668 6.9444 2.2603
42 1 7.7380 8.6428 0.8782
43 1 7.5185 9.2596 2.5334
44 1 12.5429 12.0376 1.2095
45 1 7.1693 3.1151 2.2096
46 1 7.0485 4.4210 0.9521
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001284040099.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:04
Heat of formation + Delta-G solvation = -81.306054 kcal
Electronic energy + Delta-G solvation = -26532.314470 eV
Core-core repulsion = 22549.601720 eV
Total energy + Delta-G solvation = -3982.712750 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.81541 -39.86506 -38.49688 -37.60290 -34.25430 -33.43932 -32.54552 -32.41117
-31.59410 -29.16661 -28.35081 -26.01558 -25.49983 -24.60641 -23.00033 -21.08106
-20.64658 -20.10318 -19.68397 -17.86633 -17.72264 -17.11991 -16.69269 -16.24084
-16.06171 -15.84596 -15.54626 -14.95296 -14.82585 -14.79092 -14.43410 -14.11154
-13.68083 -13.48764 -13.16305 -12.98868 -12.83114 -12.72568 -12.66858 -12.55129
-12.18662 -12.14406 -11.95161 -11.82462 -11.51033 -11.05127 -11.03249 -11.01731
-10.78394 -10.74653 -10.63791 -9.97030 -9.83350 -9.79183 -9.43519 -9.30640
-9.04993 -8.89678 -8.23578 -6.49026 -6.20329 -3.91002 1.69113 2.34171
2.83100 2.99758 3.04337 3.25150 3.28611 3.31824 3.68134 3.83066
4.12140 4.20868 4.21912 4.23831 4.32627 4.50566 4.67618 4.69656
4.74256 4.80632 4.97740 5.11842 5.14877 5.18890 5.32786 5.34128
5.34936 5.51156 5.53698 5.61809 5.64018 5.71370 5.83493 5.89708
5.92820 5.98972 6.07779 6.15384 6.19079 6.27872 6.65262 7.17135
7.29280 7.60754 7.67486 7.96884 8.36456 8.58621 9.24988 10.87059
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.021437 B = 0.001693 C = 0.001614
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1305.862516 B =16536.896886 C =17345.297181
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.189 4.189
3 C 0.177 3.823
4 C -0.149 4.149
5 O -0.537 6.537
6 C -0.167 4.167
7 C 0.512 3.488
8 O -0.513 6.513
9 N -0.724 5.724
10 C 0.123 3.877
11 H 0.115 0.885
12 C -0.153 4.153
13 C 0.129 3.871
14 H 0.109 0.891
15 N -0.722 5.722
16 C 0.536 3.464
17 O -0.515 6.515
18 C -0.154 4.154
19 S -0.059 6.059
20 C -0.537 4.537
21 H 0.072 0.928
22 C 0.074 3.926
23 N -0.868 5.868
24 Si 0.919 3.081
25 H -0.274 1.274
26 H -0.283 1.283
27 H -0.274 1.274
28 C -0.165 4.165
29 H 0.100 0.900
30 H 0.105 0.895
31 H 0.116 0.884
32 H 0.063 0.937
33 H 0.060 0.940
34 H 0.094 0.906
35 H 0.368 0.632
36 H 0.102 0.898
37 H 0.095 0.905
38 H 0.399 0.601
39 H 0.081 0.919
40 H 0.097 0.903
41 H 0.399 0.601
42 H 0.091 0.909
43 H 0.090 0.910
44 H 0.269 0.731
45 H 0.091 0.909
46 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.758 -25.320 3.455 34.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.207 4.207
3 C 0.136 3.864
4 C -0.206 4.206
5 O -0.342 6.342
6 C -0.207 4.207
7 C 0.298 3.702
8 O -0.388 6.388
9 N -0.375 5.375
10 C 0.018 3.982
11 H 0.133 0.867
12 C -0.192 4.192
13 C 0.022 3.978
14 H 0.127 0.873
15 N -0.376 5.376
16 C 0.322 3.678
17 O -0.389 6.389
18 C -0.305 4.305
19 S 0.167 5.833
20 C -0.685 4.685
21 H 0.091 0.909
22 C -0.135 4.135
23 N -0.503 5.503
24 Si 0.745 3.255
25 H -0.199 1.199
26 H -0.208 1.208
27 H -0.199 1.199
28 C -0.205 4.205
29 H 0.118 0.882
30 H 0.123 0.877
31 H 0.134 0.866
32 H 0.082 0.918
33 H 0.079 0.921
34 H 0.113 0.887
35 H 0.215 0.785
36 H 0.120 0.880
37 H 0.113 0.887
38 H 0.233 0.767
39 H 0.100 0.900
40 H 0.115 0.885
41 H 0.234 0.766
42 H 0.109 0.891
43 H 0.109 0.891
44 H 0.079 0.921
45 H 0.109 0.891
46 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -20.604 -25.391 2.772 32.816
hybrid contribution -2.073 1.181 0.018 2.386
sum -22.677 -24.210 2.790 33.289
Atomic orbital electron populations
1.23895 0.96054 1.02486 0.99217 1.23615 0.96766 0.98761 1.01549
1.19850 0.88001 0.84105 0.94493 1.21952 0.98892 1.04364 0.95348
1.86758 1.49986 1.48835 1.48611 1.22414 1.00532 0.96946 1.00810
1.20482 0.79225 0.88424 0.82113 1.90719 1.63674 1.49672 1.34685
1.46045 1.45151 1.20894 1.25428 1.22638 0.91473 0.86643 0.97479
0.86679 1.23745 0.97052 1.01913 0.96518 1.21527 0.98582 0.82061
0.95677 0.87340 1.45731 1.10122 1.13760 1.67997 1.20340 0.83103
0.87383 0.76948 1.90697 1.30567 1.70261 1.47394 1.23542 1.08524
0.94752 1.03674 1.85375 0.98916 1.14077 1.84914 1.22838 0.96462
0.99219 1.49963 0.90942 1.24985 0.94415 0.98996 0.95118 1.70005
0.98904 1.36215 1.45194 0.86225 0.77710 0.82156 0.79420 1.19943
1.20808 1.19924 1.23956 0.95503 0.99930 1.01111 0.88172 0.87666
0.86621 0.91839 0.92093 0.88697 0.78541 0.87963 0.88702 0.76715
0.90049 0.88459 0.76645 0.89091 0.89124 0.92134 0.89051 0.90344
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -0.89 13.93 29.01 0.40 -0.49 16
2 C -0.19 -1.01 8.77 -36.02 -0.32 -1.32 16
3 C 0.18 1.25 0.94 -91.77 -0.09 1.16 16
4 C -0.15 -1.29 8.50 37.16 0.32 -0.98 16
5 O -0.54 -4.72 10.85 -53.48 -0.58 -5.30 16
6 C -0.17 -0.86 4.93 -27.89 -0.14 -1.00 16
7 C 0.51 4.31 7.39 -10.99 -0.08 4.23 16
8 O -0.51 -6.61 12.56 -12.69 -0.16 -6.77 16
9 N -0.72 -4.69 5.35 -53.02 -0.28 -4.98 16
10 C 0.12 1.01 4.12 -67.12 -0.28 0.74 16
11 H 0.12 1.18 7.47 -51.93 -0.39 0.79 16
12 C -0.15 -1.09 7.58 -25.92 -0.20 -1.29 16
13 C 0.13 1.39 4.32 -67.12 -0.29 1.10 16
14 H 0.11 1.35 7.46 -51.93 -0.39 0.96 16
15 N -0.72 -9.40 5.26 -53.02 -0.28 -9.68 16
16 C 0.54 9.88 7.85 -10.98 -0.09 9.79 16
17 O -0.52 -11.53 15.46 5.56 0.09 -11.44 16
18 C -0.15 -3.12 6.16 36.01 0.22 -2.89 16
19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16
20 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16
21 H 0.07 1.96 7.80 -52.48 -0.41 1.56 16
22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16
23 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16
24 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16
25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16
26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
28 C -0.16 -1.61 7.68 -25.92 -0.20 -1.80 16
29 H 0.10 0.38 8.06 -52.49 -0.42 -0.04 16
30 H 0.11 0.52 6.41 -52.49 -0.34 0.18 16
31 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16
32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.09 1.09 5.51 -51.93 -0.29 0.81 16
35 H 0.37 1.91 8.05 45.56 0.37 2.28 16
36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16
38 H 0.40 1.40 8.73 -40.82 -0.36 1.05 16
39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
40 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16
41 H 0.40 4.20 8.70 -40.82 -0.36 3.84 16
42 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16
43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16
44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16
45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
46 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
LS Contribution 397.27 15.07 5.99 5.99
Total: -1.00 -37.81 397.27 -8.62 -46.43
By element:
Atomic # 1 Polarization: 10.76 SS G_CDS: -6.36 Total: 4.40 kcal
Atomic # 6 Polarization: -5.28 SS G_CDS: -0.53 Total: -5.81 kcal
Atomic # 7 Polarization: -40.37 SS G_CDS: 0.17 Total: -40.20 kcal
Atomic # 8 Polarization: -22.86 SS G_CDS: -0.65 Total: -23.51 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal
Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -37.81 -8.62 -46.43 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001284040099.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.879 kcal
(2) G-P(sol) polarization free energy of solvation -37.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.686 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.427 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.306 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds