Wall clock time and date at job start Sat Apr 11 2020 06:35:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50706 * 119.99890 * 2 1
4 4 C 1.52998 * 109.46966 * 240.00031 * 3 2 1
5 5 O 1.42899 * 109.46816 * 359.97438 * 3 2 1
6 6 C 1.52994 * 109.47230 * 120.00044 * 3 2 1
7 7 C 1.50698 * 109.47425 * 179.97438 * 6 3 2
8 8 O 1.21282 * 119.99364 * 0.02562 * 7 6 3
9 9 N 1.34774 * 120.00600 * 179.97438 * 7 6 3
10 10 C 1.46496 * 120.00099 * 180.02562 * 9 7 6
11 11 H 1.08994 * 112.91109 * 23.75176 * 10 9 7
12 12 C 1.53787 * 113.61210 * 155.00440 * 10 9 7
13 13 C 1.53779 * 87.07963 * 139.97940 * 12 10 9
14 14 H 1.08999 * 113.61062 * 219.93155 * 13 12 10
15 15 N 1.46502 * 113.61301 * 89.11687 * 13 12 10
16 16 C 1.34783 * 119.99683 * 154.99921 * 15 13 12
17 17 O 1.21278 * 120.00208 * 359.97438 * 16 15 13
18 18 C 1.50705 * 119.99542 * 179.97438 * 16 15 13
19 19 S 1.81004 * 109.46637 * 179.97438 * 18 16 15
20 20 C 1.76201 * 99.99733 * 180.02562 * 19 18 16
21 21 H 1.08007 * 120.00061 * 0.02562 * 20 19 18
22 22 C 1.38801 * 119.99998 * 180.02562 * 20 19 18
23 23 N 1.31628 * 120.00129 * 359.97438 * 22 20 19
24 24 Si 1.86802 * 119.99760 * 179.97438 * 22 20 19
25 25 H 1.48503 * 109.47151 * 60.00358 * 24 22 20
26 26 H 1.48506 * 109.46883 * 179.97438 * 24 22 20
27 27 H 1.48491 * 109.47455 * 300.00080 * 24 22 20
28 28 C 1.53779 * 87.08402 * 334.56577 * 13 12 10
29 29 H 1.07999 * 119.99666 * 180.02562 * 1 2 3
30 30 H 1.08000 * 120.00101 * 0.02562 * 1 2 3
31 31 H 1.08000 * 120.00101 * 179.97438 * 2 1 3
32 32 H 1.08999 * 109.47041 * 300.00384 * 4 3 2
33 33 H 1.09001 * 109.47082 * 60.00205 * 4 3 2
34 34 H 1.09004 * 109.47223 * 179.97438 * 4 3 2
35 35 H 0.96696 * 114.00170 * 60.00283 * 5 3 2
36 36 H 1.09005 * 109.47394 * 59.99923 * 6 3 2
37 37 H 1.09008 * 109.47254 * 300.00034 * 6 3 2
38 38 H 0.97002 * 119.99411 * 0.02562 * 9 7 6
39 39 H 1.08997 * 113.61028 * 254.52900 * 12 10 9
40 40 H 1.09000 * 113.61529 * 25.43039 * 12 10 9
41 41 H 0.96996 * 120.00397 * 334.99617 * 15 13 12
42 42 H 1.08994 * 109.47112 * 299.99738 * 18 16 15
43 43 H 1.08996 * 109.46796 * 60.00107 * 18 16 15
44 44 H 0.96994 * 119.99821 * 180.02562 * 23 22 20
45 45 H 1.09002 * 113.61557 * 270.88569 * 28 13 12
46 46 H 1.09004 * 113.61501 * 139.97990 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 6 2.9431 1.3862 -1.2492
5 8 1.1348 2.3912 -0.0006
6 6 2.9431 1.3863 1.2492
7 6 3.6971 2.6911 1.2489
8 8 3.5453 3.4788 0.3393
9 7 4.5391 2.9831 2.2599
10 6 5.2716 4.2518 2.2598
11 1 4.7827 5.0240 1.6658
12 6 5.6856 4.7242 3.6635
13 6 7.0200 5.1619 3.0368
14 1 7.8862 4.9540 3.6649
15 7 7.0052 6.5342 2.5240
16 6 8.1568 7.2265 2.4187
17 8 9.2051 6.7137 2.7488
18 6 8.1417 8.6380 1.8906
19 16 9.8291 9.2928 1.8711
20 6 9.5239 10.9055 1.2303
21 1 8.5164 11.2073 0.9845
22 6 10.5783 11.7882 1.0413
23 7 11.8061 11.4206 1.3412
24 14 10.2548 13.4976 0.3612
25 1 9.3355 14.2267 1.2715
26 1 11.5372 14.2392 0.2557
27 1 9.6348 13.3863 -0.9835
28 6 6.7711 4.0974 1.9553
29 1 -0.5399 -0.9353 0.0004
30 1 -0.5400 0.9353 -0.0004
31 1 1.8500 -0.9353 0.0004
32 1 3.6514 0.5577 -1.2493
33 1 2.3164 1.3285 -2.1392
34 1 3.4878 2.3304 -1.2495
35 1 0.5433 2.4033 0.7642
36 1 3.6515 0.5578 1.2492
37 1 2.3164 1.3285 2.1393
38 1 4.6601 2.3532 2.9875
39 1 5.0867 5.5537 4.0393
40 1 5.7872 3.9133 4.3848
41 1 6.1668 6.9444 2.2603
42 1 7.7380 8.6428 0.8782
43 1 7.5185 9.2596 2.5334
44 1 12.5429 12.0376 1.2095
45 1 7.1693 3.1151 2.2096
46 1 7.0485 4.4210 0.9521
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001284040099.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:03
Heat of formation + Delta-G solvation = -110.931264 kcal
Electronic energy + Delta-G solvation = -26533.599116 eV
Core-core repulsion = 22549.601720 eV
Total energy + Delta-G solvation = -3983.997396 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.58762 -40.78886 -39.47547 -38.41851 -35.18393 -34.59176 -33.97679 -33.56749
-32.08808 -30.62167 -29.00335 -27.67858 -26.73318 -25.41450 -23.57076 -22.23651
-21.39766 -20.64756 -20.53535 -19.83098 -18.27052 -18.13323 -17.50934 -17.18542
-17.03538 -16.88315 -16.48070 -16.42408 -16.16243 -15.87497 -15.45751 -15.17329
-14.73330 -14.62068 -14.29672 -14.15936 -13.84635 -13.49506 -13.36554 -13.26112
-13.19440 -13.17670 -12.94248 -12.87447 -12.61591 -12.60341 -12.46008 -11.98756
-11.87669 -11.75773 -11.57176 -11.16430 -11.13669 -10.98860 -10.52582 -10.30737
-10.29808 -10.14474 -9.89101 -8.67461 -8.35251 -6.13471 1.25657 1.32695
1.43335 1.45572 1.55673 1.56786 1.73848 2.22739 2.27358 2.28820
2.98753 3.30557 3.37176 3.41316 3.58103 3.70698 3.79778 3.88251
3.95042 4.04741 4.07790 4.24478 4.28874 4.42290 4.49344 4.60458
4.64400 4.72528 4.74413 4.81661 4.87340 4.88880 4.93697 5.02471
5.05559 5.16756 5.34167 5.40916 5.51628 5.66775 5.69905 5.83016
6.18912 6.45938 6.67021 6.89453 7.05927 7.21491 7.41445 8.73738
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.021437 B = 0.001693 C = 0.001614
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1305.862516 B =16536.896886 C =17345.297181
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.190 4.190
3 C 0.172 3.828
4 C -0.150 4.150
5 O -0.564 6.564
6 C -0.157 4.157
7 C 0.506 3.494
8 O -0.564 6.564
9 N -0.709 5.709
10 C 0.128 3.872
11 H 0.094 0.906
12 C -0.126 4.126
13 C 0.111 3.889
14 H 0.093 0.907
15 N -0.699 5.699
16 C 0.538 3.462
17 O -0.562 6.562
18 C -0.132 4.132
19 S -0.147 6.147
20 C -0.550 4.550
21 H 0.082 0.918
22 C 0.015 3.985
23 N -0.910 5.910
24 Si 0.998 3.002
25 H -0.262 1.262
26 H -0.277 1.277
27 H -0.264 1.264
28 C -0.162 4.162
29 H 0.113 0.887
30 H 0.101 0.899
31 H 0.133 0.867
32 H 0.082 0.918
33 H 0.047 0.953
34 H 0.063 0.937
35 H 0.380 0.620
36 H 0.128 0.872
37 H 0.124 0.876
38 H 0.418 0.582
39 H 0.090 0.910
40 H 0.129 0.871
41 H 0.414 0.586
42 H 0.106 0.894
43 H 0.111 0.889
44 H 0.272 0.728
45 H 0.110 0.890
46 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.334 -26.616 4.512 37.021
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.208 4.208
3 C 0.131 3.869
4 C -0.207 4.207
5 O -0.371 6.371
6 C -0.197 4.197
7 C 0.294 3.706
8 O -0.442 6.442
9 N -0.361 5.361
10 C 0.022 3.978
11 H 0.112 0.888
12 C -0.164 4.164
13 C 0.005 3.995
14 H 0.111 0.889
15 N -0.352 5.352
16 C 0.324 3.676
17 O -0.440 6.440
18 C -0.283 4.283
19 S 0.080 5.920
20 C -0.698 4.698
21 H 0.100 0.900
22 C -0.190 4.190
23 N -0.546 5.546
24 Si 0.819 3.181
25 H -0.186 1.186
26 H -0.202 1.202
27 H -0.189 1.189
28 C -0.202 4.202
29 H 0.131 0.869
30 H 0.119 0.881
31 H 0.151 0.849
32 H 0.101 0.899
33 H 0.066 0.934
34 H 0.082 0.918
35 H 0.229 0.771
36 H 0.146 0.854
37 H 0.142 0.858
38 H 0.255 0.745
39 H 0.109 0.891
40 H 0.147 0.853
41 H 0.251 0.749
42 H 0.124 0.876
43 H 0.130 0.870
44 H 0.081 0.919
45 H 0.128 0.872
46 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -23.243 -26.738 3.870 35.639
hybrid contribution -1.358 1.467 -0.324 2.025
sum -24.601 -25.271 3.547 35.446
Atomic orbital electron populations
1.24029 0.96133 1.02946 0.98624 1.23589 0.96810 0.98339 1.02033
1.19908 0.88029 0.84547 0.94420 1.21940 0.99222 1.03400 0.96167
1.86721 1.50751 1.49905 1.49766 1.22408 1.00735 0.95602 1.00957
1.21117 0.79041 0.89047 0.81407 1.90719 1.65359 1.51498 1.36644
1.45885 1.44146 1.20495 1.25611 1.22379 0.90334 0.87133 0.97958
0.88754 1.23656 0.93759 1.02860 0.96132 1.21784 1.00442 0.80660
0.96603 0.88890 1.45490 1.08996 1.14466 1.66269 1.20027 0.83862
0.86898 0.76797 1.90682 1.32477 1.70984 1.49826 1.23392 1.03561
0.96091 1.05294 1.85517 1.05925 1.15285 1.85301 1.23188 0.97108
0.99454 1.50032 0.90013 1.26111 0.93975 1.03753 0.95153 1.70169
1.00064 1.37967 1.46449 0.85016 0.77921 0.76151 0.78978 1.18606
1.20238 1.18850 1.23962 0.96905 1.00289 0.99056 0.86853 0.88131
0.84938 0.89940 0.93368 0.91835 0.77083 0.85392 0.85840 0.74482
0.89104 0.85269 0.74908 0.87595 0.87050 0.91947 0.87210 0.93213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.42 13.93 67.78 0.94 -0.48 16
2 C -0.19 -1.57 8.77 25.65 0.22 -1.35 16
3 C 0.17 2.17 0.94 -11.54 -0.01 2.16 16
4 C -0.15 -2.60 8.50 71.98 0.61 -1.98 16
5 O -0.56 -9.64 10.85 -131.53 -1.43 -11.07 16
6 C -0.16 -1.17 4.93 29.85 0.15 -1.02 16
7 C 0.51 7.69 7.39 87.66 0.65 8.34 16
8 O -0.56 -14.63 12.56 14.41 0.18 -14.45 16
9 N -0.71 -7.29 5.35 -440.04 -2.36 -9.64 16
10 C 0.13 1.88 4.12 45.52 0.19 2.07 16
11 H 0.09 1.86 7.47 -2.39 -0.02 1.84 16
12 C -0.13 -1.40 7.58 31.12 0.24 -1.16 16
13 C 0.11 2.27 4.32 45.52 0.20 2.46 16
14 H 0.09 2.26 7.46 -2.39 -0.02 2.25 16
15 N -0.70 -17.66 5.26 -440.03 -2.32 -19.97 16
16 C 0.54 19.98 7.85 87.66 0.69 20.67 16
17 O -0.56 -25.93 15.46 -3.02 -0.05 -25.98 16
18 C -0.13 -5.34 6.16 71.24 0.44 -4.91 16
19 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16
20 C -0.55 -31.89 9.50 67.95 0.65 -31.24 16
21 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16
22 C 0.01 0.86 5.49 84.86 0.47 1.33 16
23 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16
24 Si 1.00 44.15 29.55 68.60 2.03 46.17 16
25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16
26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16
27 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16
28 C -0.16 -3.00 7.68 31.12 0.24 -2.76 16
29 H 0.11 0.58 8.06 -2.91 -0.02 0.56 16
30 H 0.10 0.87 6.41 -2.91 -0.02 0.85 16
31 H 0.13 0.64 8.06 -2.91 -0.02 0.62 16
32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
34 H 0.06 1.54 5.51 -2.39 -0.01 1.52 16
35 H 0.38 3.59 8.05 -74.06 -0.60 2.99 16
36 H 0.13 0.33 8.14 -2.38 -0.02 0.31 16
37 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16
38 H 0.42 1.22 8.73 -92.71 -0.81 0.41 16
39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16
40 H 0.13 0.71 8.12 -2.39 -0.02 0.69 16
41 H 0.41 8.11 8.70 -92.71 -0.81 7.30 16
42 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16
43 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16
44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16
45 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16
46 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16
Total: -1.00 -87.54 397.27 -0.34 -87.88
By element:
Atomic # 1 Polarization: 21.65 SS G_CDS: -1.19 Total: 20.46 kcal
Atomic # 6 Polarization: -13.54 SS G_CDS: 5.66 Total: -7.88 kcal
Atomic # 7 Polarization: -81.30 SS G_CDS: -4.39 Total: -85.69 kcal
Atomic # 8 Polarization: -50.21 SS G_CDS: -1.29 Total: -51.50 kcal
Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal
Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal
Total: -87.54 -0.34 -87.88 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001284040099.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.050 kcal
(2) G-P(sol) polarization free energy of solvation -87.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.587 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.882 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.931 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds