Wall clock time and date at job start Sat Apr 11 2020 06:34:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42900 * 109.47604 * 2 1
4 4 C 1.35959 * 117.00404 * 180.02562 * 3 2 1
5 5 C 1.38738 * 119.98291 * 180.02562 * 4 3 2
6 6 C 1.38073 * 120.01733 * 180.02562 * 5 4 3
7 7 C 1.38893 * 119.98024 * 359.97438 * 6 5 4
8 8 N 1.39963 * 120.01426 * 179.97438 * 7 6 5
9 9 C 1.46500 * 119.99894 * 172.52889 * 8 7 6
10 10 C 1.50708 * 109.46861 * 277.14167 * 9 8 7
11 11 H 1.08000 * 119.99531 * 359.97438 * 10 9 8
12 12 C 1.37873 * 119.99999 * 179.97438 * 10 9 8
13 13 N 1.31517 * 119.99891 * 179.97438 * 12 10 9
14 14 Si 1.86796 * 119.99963 * 0.02562 * 12 10 9
15 15 H 1.48500 * 109.47270 * 89.99651 * 14 12 10
16 16 H 1.48503 * 109.47290 * 209.99318 * 14 12 10
17 17 H 1.48502 * 109.47216 * 329.99606 * 14 12 10
18 18 C 1.34769 * 120.00161 * 352.52184 * 8 7 6
19 19 O 1.21532 * 120.00417 * 3.17745 * 18 8 7
20 20 C 1.48120 * 120.00391 * 183.16921 * 18 8 7
21 21 C 1.36052 * 119.77555 * 152.35495 * 20 18 8
22 22 C 1.41946 * 119.03607 * 180.02562 * 21 20 18
23 23 O 1.22188 * 120.68931 * 180.02562 * 22 21 20
24 24 C 1.41291 * 118.62141 * 359.97438 * 22 21 20
25 25 C 1.35351 * 119.45234 * 0.02562 * 24 22 21
26 26 N 1.34772 * 120.95241 * 0.02562 * 25 24 22
27 27 H 0.96999 * 119.25729 * 179.97438 * 26 25 24
28 28 C 1.38887 * 119.96387 * 0.27544 * 7 6 5
29 29 C 1.38068 * 119.98210 * 359.46878 * 28 7 6
30 30 H 1.08997 * 109.47091 * 59.98961 * 1 2 3
31 31 H 1.08993 * 109.47121 * 180.02562 * 1 2 3
32 32 H 1.09007 * 109.46448 * 299.99918 * 1 2 3
33 33 H 1.09007 * 109.46889 * 240.00382 * 2 1 3
34 34 H 1.09004 * 109.47441 * 120.00460 * 2 1 3
35 35 H 1.07992 * 119.98822 * 0.02562 * 5 4 3
36 36 H 1.07998 * 120.00810 * 179.97438 * 6 5 4
37 37 H 1.09001 * 109.47374 * 37.13418 * 9 8 7
38 38 H 1.08992 * 109.47431 * 157.14309 * 9 8 7
39 39 H 0.96994 * 119.99713 * 180.02562 * 13 12 10
40 40 H 1.07995 * 120.48029 * 0.02562 * 21 20 18
41 41 H 1.08001 * 120.27037 * 179.72738 * 24 22 21
42 42 H 1.08000 * 119.52250 * 179.97438 * 25 24 22
43 43 H 1.08004 * 120.00781 * 179.70584 * 28 7 6
44 44 H 1.07999 * 119.99417 * 180.23666 * 29 28 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0065 1.3472 0.0000
4 6 3.3543 1.5254 -0.0005
5 6 3.8843 2.8075 0.0000
6 6 5.2530 2.9893 -0.0011
7 6 6.0993 1.8880 -0.0022
8 7 7.4869 2.0714 -0.0038
9 6 8.3781 0.9202 0.1600
10 6 8.5211 0.6003 1.6258
11 1 8.0005 1.1953 2.3616
12 6 9.3164 -0.4519 2.0274
13 7 9.4416 -0.7307 3.3065
14 14 10.2172 -1.4805 0.7547
15 1 11.5558 -0.8906 0.4988
16 1 10.3762 -2.8673 1.2615
17 1 9.4359 -1.5014 -0.5080
18 6 8.0032 3.3069 -0.1563
19 8 7.2645 4.2688 -0.2344
20 6 9.4709 3.4926 -0.2285
21 6 9.9853 4.5499 -0.9130
22 6 11.3942 4.7124 -0.9725
23 8 11.8885 5.6512 -1.5785
24 6 12.2129 3.7667 -0.3156
25 6 11.6387 2.7367 0.3488
26 7 10.2985 2.6007 0.3917
27 1 9.9132 1.8530 0.8747
28 6 5.5680 0.6048 -0.0079
29 6 4.1991 0.4248 -0.0015
30 1 -0.3633 0.5140 -0.8899
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3632 0.5139 0.8901
33 1 1.8933 -0.5138 -0.8901
34 1 1.8934 -0.5139 0.8900
35 1 3.2260 3.6637 0.0012
36 1 5.6653 3.9874 -0.0011
37 1 7.9588 0.0591 -0.3604
38 1 9.3568 1.1560 -0.2575
39 1 10.0014 -1.4707 3.5890
40 1 9.3312 5.2552 -1.4039
41 1 13.2882 3.8623 -0.3474
42 1 12.2635 2.0130 0.8510
43 1 6.2255 -0.2521 -0.0136
44 1 3.7857 -0.5730 -0.0021
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001464809043.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:21
Heat of formation + Delta-G solvation = -2.632202 kcal
Electronic energy + Delta-G solvation = -29672.585459 eV
Core-core repulsion = 25557.840311 eV
Total energy + Delta-G solvation = -4114.745147 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.49254 -40.10515 -39.26816 -37.41369 -37.24029 -35.54328 -33.22222 -32.04074
-31.64614 -31.01141 -30.70032 -29.12257 -28.13034 -24.71568 -24.08033 -23.43879
-23.09893 -21.91437 -21.44425 -20.26288 -18.16210 -18.06400 -17.70910 -17.54018
-16.93372 -16.47490 -16.07496 -15.54502 -15.43761 -15.24283 -14.75928 -14.51116
-14.28248 -14.09619 -13.99181 -13.40161 -13.32912 -13.30603 -13.01399 -12.93444
-12.76702 -12.56198 -12.43975 -12.33029 -12.15338 -11.82888 -11.71307 -11.62422
-11.09378 -11.00928 -10.72593 -10.63982 -10.21852 -9.58637 -9.45627 -9.35400
-9.29902 -9.02301 -8.70594 -7.77942 -7.25243 -6.81145 -4.94184 0.89975
1.57405 1.64710 1.71857 2.71831 2.79506 2.85473 2.87178 2.95859
3.30445 3.32943 3.71388 4.05495 4.14173 4.32854 4.44797 4.80559
4.84829 4.88748 5.07112 5.13351 5.17708 5.22512 5.32778 5.36384
5.47996 5.60283 5.63511 5.63970 5.68716 5.81852 5.86557 5.90458
6.01668 6.26813 6.30042 6.33462 6.50959 6.59701 6.64625 6.66132
6.75414 7.02928 7.24785 7.32445 7.43681 7.61082 7.75061 8.10931
8.30001 8.39269 8.69071 10.28113
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.010889 B = 0.003806 C = 0.002949
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2570.745436 B = 7355.384922 C = 9491.258042
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.054 3.946
3 O -0.320 6.320
4 C 0.098 3.902
5 C -0.134 4.134
6 C -0.129 4.129
7 C 0.129 3.871
8 N -0.517 5.517
9 C 0.166 3.834
10 C -0.576 4.576
11 H 0.093 0.907
12 C 0.089 3.911
13 N -0.854 5.854
14 Si 0.853 3.147
15 H -0.263 1.263
16 H -0.270 1.270
17 H -0.257 1.257
18 C 0.556 3.444
19 O -0.506 6.506
20 C 0.128 3.872
21 C -0.221 4.221
22 C 0.392 3.608
23 O -0.540 6.540
24 C -0.310 4.310
25 C 0.152 3.848
26 N -0.570 5.570
27 H 0.445 0.555
28 C -0.096 4.096
29 C -0.188 4.188
30 H 0.064 0.936
31 H 0.075 0.925
32 H 0.065 0.935
33 H 0.059 0.941
34 H 0.061 0.939
35 H 0.129 0.871
36 H 0.186 0.814
37 H 0.055 0.945
38 H 0.049 0.951
39 H 0.278 0.722
40 H 0.154 0.846
41 H 0.145 0.855
42 H 0.166 0.834
43 H 0.136 0.864
44 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.295 -3.287 -4.784 9.322
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.021 4.021
3 O -0.235 6.235
4 C 0.053 3.947
5 C -0.153 4.153
6 C -0.148 4.148
7 C 0.035 3.965
8 N -0.237 5.237
9 C 0.045 3.955
10 C -0.614 4.614
11 H 0.111 0.889
12 C -0.121 4.121
13 N -0.487 5.487
14 Si 0.677 3.323
15 H -0.188 1.188
16 H -0.194 1.194
17 H -0.181 1.181
18 C 0.344 3.656
19 O -0.383 6.383
20 C 0.016 3.984
21 C -0.248 4.248
22 C 0.286 3.714
23 O -0.429 6.429
24 C -0.335 4.335
25 C 0.020 3.980
26 N -0.195 5.195
27 H 0.305 0.695
28 C -0.116 4.116
29 C -0.207 4.207
30 H 0.083 0.917
31 H 0.094 0.906
32 H 0.084 0.916
33 H 0.077 0.923
34 H 0.079 0.921
35 H 0.147 0.853
36 H 0.202 0.798
37 H 0.073 0.927
38 H 0.066 0.934
39 H 0.088 0.912
40 H 0.172 0.828
41 H 0.163 0.837
42 H 0.184 0.816
43 H 0.154 0.846
44 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -7.482 -2.378 -4.924 9.267
hybrid contribution 0.489 -1.692 -0.037 1.762
sum -6.993 -4.070 -4.962 9.491
Atomic orbital electron populations
1.21762 0.93110 1.02578 1.03344 1.22712 0.95513 0.82583 1.01333
1.86037 1.19452 1.28663 1.89350 1.19011 0.81844 0.94326 0.99500
1.20375 0.94808 0.94391 1.05776 1.22539 0.91652 1.01759 0.98889
1.17776 0.81753 0.94231 1.02693 1.45415 1.05428 1.08068 1.64794
1.20724 0.89977 0.85196 0.99569 1.21330 1.32549 1.17760 0.89727
0.88920 1.24952 0.95794 0.95903 0.95478 1.69850 1.36131 1.28281
1.14449 0.87179 0.81087 0.81762 0.82306 1.18770 1.19440 1.18090
1.18155 0.86722 0.82940 0.77744 1.90426 1.57496 1.40223 1.50190
1.20173 0.89791 0.92072 0.96369 1.22834 0.98659 0.98644 1.04649
1.17161 0.88105 0.85601 0.80536 1.90754 1.77419 1.32583 1.42098
1.22362 1.02154 0.99711 1.09248 1.21923 0.83964 0.97556 0.94528
1.43493 1.05598 1.26373 1.44061 0.69507 1.20760 0.94624 0.95994
1.00262 1.20944 0.93441 0.97812 1.08538 0.91686 0.90623 0.91618
0.92292 0.92121 0.85346 0.79825 0.92691 0.93371 0.91173 0.82847
0.83703 0.81644 0.84596 0.85577
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.20 10.28 37.16 0.38 -0.81 16
2 C 0.05 0.56 5.46 37.16 0.20 0.76 16
3 O -0.32 -4.47 10.14 -19.61 -0.20 -4.67 16
4 C 0.10 1.52 6.69 -39.21 -0.26 1.25 16
5 C -0.13 -2.13 9.98 -39.46 -0.39 -2.53 16
6 C -0.13 -2.27 9.03 -39.40 -0.36 -2.63 16
7 C 0.13 2.37 6.44 -83.66 -0.54 1.83 16
8 N -0.52 -9.65 2.70 -115.66 -0.31 -9.96 16
9 C 0.17 3.10 3.18 -5.19 -0.02 3.08 16
10 C -0.58 -12.43 7.97 -34.44 -0.27 -12.71 16
11 H 0.09 2.34 8.06 -52.49 -0.42 1.91 16
12 C 0.09 1.94 5.44 -17.82 -0.10 1.85 16
13 N -0.85 -20.65 13.96 55.43 0.77 -19.87 16
14 Si 0.85 15.72 27.47 -169.99 -4.67 11.05 16
15 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16
16 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16
17 H -0.26 -4.53 6.54 56.52 0.37 -4.16 16
18 C 0.56 10.37 7.49 -12.21 -0.09 10.28 16
19 O -0.51 -9.81 13.00 5.34 0.07 -9.74 16
20 C 0.13 2.24 6.25 -82.49 -0.52 1.73 16
21 C -0.22 -3.92 9.54 -38.95 -0.37 -4.29 16
22 C 0.39 7.27 6.78 -37.00 -0.25 7.02 16
23 O -0.54 -11.71 17.89 4.75 0.08 -11.63 16
24 C -0.31 -4.77 10.00 -39.45 -0.39 -5.16 16
25 C 0.15 2.18 11.13 -17.29 -0.19 1.98 16
26 N -0.57 -9.43 3.84 -9.83 -0.04 -9.47 16
27 H 0.44 7.87 3.42 -40.82 -0.14 7.73 16
28 C -0.10 -1.63 9.26 -39.40 -0.36 -2.00 16
29 C -0.19 -2.84 9.03 -39.46 -0.36 -3.20 16
30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16
32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.06 0.56 7.66 -51.92 -0.40 0.16 16
34 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16
35 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16
36 H 0.19 3.36 4.55 -56.17 -0.26 3.10 16
37 H 0.06 1.00 5.37 -51.93 -0.28 0.72 16
38 H 0.05 0.86 4.13 -51.93 -0.21 0.64 16
39 H 0.28 6.25 8.31 -40.82 -0.34 5.91 16
40 H 0.15 2.65 7.83 -52.49 -0.41 2.23 16
41 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16
42 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16
43 H 0.14 2.27 6.15 -52.48 -0.32 1.95 16
44 H 0.13 1.58 6.29 -52.49 -0.33 1.25 16
LS Contribution 361.70 15.07 5.45 5.45
Total: -1.00 -27.44 361.70 -7.60 -35.05
By element:
Atomic # 1 Polarization: 22.19 SS G_CDS: -4.87 Total: 17.32 kcal
Atomic # 6 Polarization: 0.36 SS G_CDS: -3.89 Total: -3.53 kcal
Atomic # 7 Polarization: -39.72 SS G_CDS: 0.42 Total: -39.30 kcal
Atomic # 8 Polarization: -25.99 SS G_CDS: -0.04 Total: -26.04 kcal
Atomic # 14 Polarization: 15.72 SS G_CDS: -4.67 Total: 11.05 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -27.44 -7.60 -35.05 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001464809043.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.415 kcal
(2) G-P(sol) polarization free energy of solvation -27.444 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.971 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.047 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.632 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds