Wall clock time and date at job start Sat Apr 11 2020 06:34:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42900 * 109.47604 * 2 1
4 4 C 1.35959 * 117.00404 * 180.02562 * 3 2 1
5 5 C 1.38738 * 119.98291 * 180.02562 * 4 3 2
6 6 C 1.38073 * 120.01733 * 180.02562 * 5 4 3
7 7 C 1.38893 * 119.98024 * 359.97438 * 6 5 4
8 8 N 1.39963 * 120.01426 * 179.97438 * 7 6 5
9 9 C 1.46500 * 119.99894 * 172.52889 * 8 7 6
10 10 C 1.50708 * 109.46861 * 277.14167 * 9 8 7
11 11 H 1.08000 * 119.99531 * 359.97438 * 10 9 8
12 12 C 1.37873 * 119.99999 * 179.97438 * 10 9 8
13 13 N 1.31517 * 119.99891 * 179.97438 * 12 10 9
14 14 Si 1.86796 * 119.99963 * 0.02562 * 12 10 9
15 15 H 1.48500 * 109.47270 * 89.99651 * 14 12 10
16 16 H 1.48503 * 109.47290 * 209.99318 * 14 12 10
17 17 H 1.48502 * 109.47216 * 329.99606 * 14 12 10
18 18 C 1.34769 * 120.00161 * 352.52184 * 8 7 6
19 19 O 1.21532 * 120.00417 * 3.17745 * 18 8 7
20 20 C 1.48120 * 120.00391 * 183.16921 * 18 8 7
21 21 C 1.36052 * 119.77555 * 152.35495 * 20 18 8
22 22 C 1.41946 * 119.03607 * 180.02562 * 21 20 18
23 23 O 1.22188 * 120.68931 * 180.02562 * 22 21 20
24 24 C 1.41291 * 118.62141 * 359.97438 * 22 21 20
25 25 C 1.35351 * 119.45234 * 0.02562 * 24 22 21
26 26 N 1.34772 * 120.95241 * 0.02562 * 25 24 22
27 27 H 0.96999 * 119.25729 * 179.97438 * 26 25 24
28 28 C 1.38887 * 119.96387 * 0.27544 * 7 6 5
29 29 C 1.38068 * 119.98210 * 359.46878 * 28 7 6
30 30 H 1.08997 * 109.47091 * 59.98961 * 1 2 3
31 31 H 1.08993 * 109.47121 * 180.02562 * 1 2 3
32 32 H 1.09007 * 109.46448 * 299.99918 * 1 2 3
33 33 H 1.09007 * 109.46889 * 240.00382 * 2 1 3
34 34 H 1.09004 * 109.47441 * 120.00460 * 2 1 3
35 35 H 1.07992 * 119.98822 * 0.02562 * 5 4 3
36 36 H 1.07998 * 120.00810 * 179.97438 * 6 5 4
37 37 H 1.09001 * 109.47374 * 37.13418 * 9 8 7
38 38 H 1.08992 * 109.47431 * 157.14309 * 9 8 7
39 39 H 0.96994 * 119.99713 * 180.02562 * 13 12 10
40 40 H 1.07995 * 120.48029 * 0.02562 * 21 20 18
41 41 H 1.08001 * 120.27037 * 179.72738 * 24 22 21
42 42 H 1.08000 * 119.52250 * 179.97438 * 25 24 22
43 43 H 1.08004 * 120.00781 * 179.70584 * 28 7 6
44 44 H 1.07999 * 119.99417 * 180.23666 * 29 28 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0065 1.3472 0.0000
4 6 3.3543 1.5254 -0.0005
5 6 3.8843 2.8075 0.0000
6 6 5.2530 2.9893 -0.0011
7 6 6.0993 1.8880 -0.0022
8 7 7.4869 2.0714 -0.0038
9 6 8.3781 0.9202 0.1600
10 6 8.5211 0.6003 1.6258
11 1 8.0005 1.1953 2.3616
12 6 9.3164 -0.4519 2.0274
13 7 9.4416 -0.7307 3.3065
14 14 10.2172 -1.4805 0.7547
15 1 11.5558 -0.8906 0.4988
16 1 10.3762 -2.8673 1.2615
17 1 9.4359 -1.5014 -0.5080
18 6 8.0032 3.3069 -0.1563
19 8 7.2645 4.2688 -0.2344
20 6 9.4709 3.4926 -0.2285
21 6 9.9853 4.5499 -0.9130
22 6 11.3942 4.7124 -0.9725
23 8 11.8885 5.6512 -1.5785
24 6 12.2129 3.7667 -0.3156
25 6 11.6387 2.7367 0.3488
26 7 10.2985 2.6007 0.3917
27 1 9.9132 1.8530 0.8747
28 6 5.5680 0.6048 -0.0079
29 6 4.1991 0.4248 -0.0015
30 1 -0.3633 0.5140 -0.8899
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3632 0.5139 0.8901
33 1 1.8933 -0.5138 -0.8901
34 1 1.8934 -0.5139 0.8900
35 1 3.2260 3.6637 0.0012
36 1 5.6653 3.9874 -0.0011
37 1 7.9588 0.0591 -0.3604
38 1 9.3568 1.1560 -0.2575
39 1 10.0014 -1.4707 3.5890
40 1 9.3312 5.2552 -1.4039
41 1 13.2882 3.8623 -0.3474
42 1 12.2635 2.0130 0.8510
43 1 6.2255 -0.2521 -0.0136
44 1 3.7857 -0.5730 -0.0021
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001464809043.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:20
Heat of formation + Delta-G solvation = -17.267626 kcal
Electronic energy + Delta-G solvation = -29673.220098 eV
Core-core repulsion = 25557.840311 eV
Total energy + Delta-G solvation = -4115.379787 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.89801 -41.39320 -40.52344 -38.86456 -38.55605 -36.93610 -34.85362 -33.21792
-32.74191 -32.36694 -31.94539 -30.56347 -29.50610 -26.07340 -25.27961 -24.82244
-24.37691 -23.18017 -22.66666 -21.63200 -19.43983 -19.37848 -19.25909 -18.90839
-18.36902 -17.84749 -17.02108 -16.89755 -16.82802 -16.53911 -16.18265 -15.90728
-15.71884 -15.43140 -15.30880 -14.73637 -14.61452 -14.45079 -14.29835 -14.25607
-13.95042 -13.83427 -13.68418 -13.57008 -13.26395 -13.10406 -13.01072 -12.71725
-12.47167 -12.31141 -11.87967 -11.85526 -11.71635 -10.98816 -10.92122 -10.85542
-10.67514 -10.46311 -9.99596 -9.17453 -8.58257 -8.49017 -6.68054 -0.51981
0.30999 0.35508 0.39153 1.31026 1.37693 1.40955 1.46250 1.53771
1.93996 2.18711 2.30609 2.68934 2.78044 2.82569 2.92672 3.69322
3.80268 3.91733 3.93675 3.99041 4.07166 4.08476 4.17442 4.27313
4.30986 4.36923 4.42289 4.47596 4.56429 4.61205 4.74657 4.96651
4.98516 5.00767 5.07052 5.09698 5.18151 5.21949 5.34826 5.35132
5.42276 5.69843 5.86923 5.92129 5.98563 6.18614 6.46287 6.49411
6.67678 6.97945 6.99782 8.63849
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.010889 B = 0.003806 C = 0.002949
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2570.745436 B = 7355.384922 C = 9491.258042
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.042 3.958
3 O -0.329 6.329
4 C 0.102 3.898
5 C -0.140 4.140
6 C -0.141 4.141
7 C 0.101 3.899
8 N -0.518 5.518
9 C 0.171 3.829
10 C -0.569 4.569
11 H 0.044 0.956
12 C 0.051 3.949
13 N -0.904 5.904
14 Si 0.904 3.096
15 H -0.233 1.233
16 H -0.279 1.279
17 H -0.241 1.241
18 C 0.549 3.451
19 O -0.521 6.521
20 C 0.131 3.869
21 C -0.225 4.225
22 C 0.379 3.621
23 O -0.584 6.584
24 C -0.307 4.307
25 C 0.165 3.835
26 N -0.572 5.572
27 H 0.443 0.557
28 C -0.104 4.104
29 C -0.184 4.184
30 H 0.064 0.936
31 H 0.100 0.900
32 H 0.061 0.939
33 H 0.072 0.928
34 H 0.066 0.934
35 H 0.144 0.856
36 H 0.175 0.825
37 H 0.067 0.933
38 H 0.067 0.933
39 H 0.280 0.720
40 H 0.150 0.850
41 H 0.170 0.830
42 H 0.209 0.791
43 H 0.138 0.862
44 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.195 -5.398 -5.734 10.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.033 4.033
3 O -0.244 6.244
4 C 0.057 3.943
5 C -0.159 4.159
6 C -0.160 4.160
7 C 0.007 3.993
8 N -0.238 5.238
9 C 0.050 3.950
10 C -0.607 4.607
11 H 0.063 0.937
12 C -0.155 4.155
13 N -0.539 5.539
14 Si 0.724 3.276
15 H -0.156 1.156
16 H -0.204 1.204
17 H -0.164 1.164
18 C 0.337 3.663
19 O -0.399 6.399
20 C 0.018 3.982
21 C -0.252 4.252
22 C 0.277 3.723
23 O -0.476 6.476
24 C -0.330 4.330
25 C 0.033 3.967
26 N -0.195 5.195
27 H 0.302 0.698
28 C -0.124 4.124
29 C -0.203 4.203
30 H 0.084 0.916
31 H 0.118 0.882
32 H 0.080 0.920
33 H 0.090 0.910
34 H 0.084 0.916
35 H 0.161 0.839
36 H 0.191 0.809
37 H 0.085 0.915
38 H 0.084 0.916
39 H 0.090 0.910
40 H 0.167 0.833
41 H 0.187 0.813
42 H 0.226 0.774
43 H 0.155 0.845
44 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -7.400 -4.490 -5.880 10.464
hybrid contribution 0.252 -1.062 0.349 1.146
sum -7.148 -5.553 -5.532 10.608
Atomic orbital electron populations
1.21793 0.91229 1.04164 1.03205 1.23081 0.97070 0.80971 1.02180
1.86050 1.18277 1.31135 1.88925 1.19082 0.82800 0.94122 0.98332
1.20549 0.94380 0.95572 1.05389 1.22465 0.92484 1.01220 0.99808
1.18053 0.81727 0.95128 1.04351 1.45424 1.05768 1.07956 1.64656
1.20668 0.90950 0.85689 0.97683 1.21181 1.31929 1.17277 0.90322
0.93740 1.25628 0.96229 0.96621 0.97008 1.69980 1.37702 1.29377
1.16866 0.86348 0.81475 0.79556 0.80177 1.15590 1.20416 1.16448
1.18376 0.87241 0.82917 0.77722 1.90427 1.57996 1.40597 1.50897
1.20020 0.89371 0.92271 0.96534 1.22796 0.98710 0.98741 1.04961
1.17564 0.88555 0.85780 0.80429 1.90735 1.77936 1.34488 1.44455
1.22451 1.03045 0.98917 1.08632 1.22539 0.82974 0.97761 0.93400
1.43540 1.06602 1.25834 1.43545 0.69824 1.20878 0.95567 0.95402
1.00587 1.21223 0.92650 0.99176 1.07212 0.91643 0.88159 0.91961
0.91021 0.91606 0.83851 0.80920 0.91544 0.91581 0.91035 0.83271
0.81289 0.77392 0.84460 0.82784
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16
2 C 0.04 0.76 5.46 71.98 0.39 1.15 16
3 O -0.33 -8.62 10.14 -93.09 -0.94 -9.57 16
4 C 0.10 3.04 6.69 22.51 0.15 3.19 16
5 C -0.14 -4.43 9.98 22.35 0.22 -4.20 16
6 C -0.14 -5.05 9.03 22.39 0.20 -4.85 16
7 C 0.10 3.74 6.44 38.15 0.25 3.98 16
8 N -0.52 -19.45 2.70 -638.13 -1.72 -21.17 16
9 C 0.17 6.19 3.18 85.64 0.27 6.47 16
10 C -0.57 -24.60 7.97 25.60 0.20 -24.40 16
11 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16
12 C 0.05 2.19 5.44 84.65 0.46 2.65 16
13 N -0.90 -43.98 13.96 21.45 0.30 -43.68 16
14 Si 0.90 30.07 27.47 68.60 1.88 31.95 16
15 H -0.23 -6.65 7.11 99.48 0.71 -5.94 16
16 H -0.28 -9.73 7.11 99.48 0.71 -9.03 16
17 H -0.24 -7.39 6.54 99.48 0.65 -6.74 16
18 C 0.55 20.80 7.49 86.87 0.65 21.45 16
19 O -0.52 -20.91 13.00 -3.82 -0.05 -20.96 16
20 C 0.13 4.53 6.25 40.52 0.25 4.79 16
21 C -0.23 -8.02 9.54 22.68 0.22 -7.81 16
22 C 0.38 13.90 6.78 23.94 0.16 14.06 16
23 O -0.58 -25.55 17.89 -5.93 -0.11 -25.65 16
24 C -0.31 -8.69 10.00 22.35 0.22 -8.47 16
25 C 0.16 4.17 11.13 83.57 0.93 5.10 16
26 N -0.57 -17.91 3.84 -185.01 -0.71 -18.62 16
27 H 0.44 14.98 3.42 -92.71 -0.32 14.66 16
28 C -0.10 -3.48 9.26 22.38 0.21 -3.27 16
29 C -0.18 -5.29 9.03 22.35 0.20 -5.08 16
30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16
32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16
33 H 0.07 1.14 7.66 -2.38 -0.02 1.12 16
34 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16
35 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16
36 H 0.17 6.59 4.55 -61.15 -0.28 6.31 16
37 H 0.07 2.28 5.37 -2.39 -0.01 2.27 16
38 H 0.07 2.19 4.13 -2.39 -0.01 2.18 16
39 H 0.28 12.63 8.31 -92.71 -0.77 11.86 16
40 H 0.15 5.34 7.83 -2.91 -0.02 5.31 16
41 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16
42 H 0.21 3.52 8.06 -2.91 -0.02 3.49 16
43 H 0.14 4.46 6.15 -2.91 -0.02 4.44 16
44 H 0.15 3.46 6.29 -2.91 -0.02 3.44 16
Total: -1.00 -61.69 361.70 4.82 -56.87
By element:
Atomic # 1 Polarization: 46.86 SS G_CDS: 0.43 Total: 47.29 kcal
Atomic # 6 Polarization: -2.19 SS G_CDS: 5.74 Total: 3.54 kcal
Atomic # 7 Polarization: -81.34 SS G_CDS: -2.13 Total: -83.47 kcal
Atomic # 8 Polarization: -55.08 SS G_CDS: -1.10 Total: -56.18 kcal
Atomic # 14 Polarization: 30.07 SS G_CDS: 1.88 Total: 31.95 kcal
Total: -61.69 4.82 -56.87 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001464809043.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.605 kcal
(2) G-P(sol) polarization free energy of solvation -61.690 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.268 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds