Wall clock time and date at job start Sat Apr 11 2020 06:33:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 O 1.20753 * 119.99746 * 2 1
4 4 C 1.50697 * 120.00235 * 180.02562 * 2 1 3
5 5 C 1.52993 * 109.47344 * 179.97438 * 4 2 1
6 6 C 1.52996 * 109.47208 * 179.97438 * 5 4 2
7 7 C 1.50700 * 109.47367 * 180.02562 * 6 5 4
8 8 O 1.21290 * 119.99658 * 359.97438 * 7 6 5
9 9 N 1.34769 * 120.00590 * 179.97438 * 7 6 5
10 10 C 1.46497 * 120.00516 * 179.97438 * 9 7 6
11 11 C 1.53000 * 109.47268 * 175.01699 * 10 9 7
12 12 H 1.08999 * 112.74256 * 314.98627 * 11 10 9
13 13 C 1.53500 * 113.46817 * 85.73492 * 11 10 9
14 14 C 1.53610 * 83.30668 * 140.83005 * 13 11 10
15 15 N 1.47067 * 113.46688 * 184.24493 * 11 10 9
16 16 C 1.34780 * 136.05995 * 38.05959 * 15 11 10
17 17 O 1.21278 * 119.99709 * 5.04016 * 16 15 11
18 18 C 1.50700 * 119.99831 * 185.03570 * 16 15 11
19 19 S 1.81006 * 109.46861 * 180.02562 * 18 16 15
20 20 C 1.76200 * 100.00203 * 180.02562 * 19 18 16
21 21 H 1.08002 * 119.99533 * 0.02562 * 20 19 18
22 22 C 1.38792 * 120.00281 * 180.02562 * 20 19 18
23 23 N 1.31632 * 120.00339 * 180.02562 * 22 20 19
24 24 Si 1.86804 * 119.99929 * 359.97438 * 22 20 19
25 25 H 1.48504 * 109.47211 * 89.99970 * 24 22 20
26 26 H 1.48490 * 109.47385 * 210.00073 * 24 22 20
27 27 H 1.48502 * 109.47113 * 330.00229 * 24 22 20
28 28 H 1.09012 * 109.46337 * 269.99276 * 1 2 3
29 29 H 1.08998 * 109.47594 * 29.99322 * 1 2 3
30 30 H 1.08994 * 109.46883 * 150.00134 * 1 2 3
31 31 H 1.09000 * 109.46961 * 59.99164 * 4 2 1
32 32 H 1.09006 * 109.46949 * 299.99624 * 4 2 1
33 33 H 1.09001 * 109.46905 * 59.99640 * 5 4 2
34 34 H 1.08996 * 109.47134 * 299.99834 * 5 4 2
35 35 H 1.09001 * 109.47344 * 60.00077 * 6 5 4
36 36 H 1.08996 * 109.47540 * 299.99780 * 6 5 4
37 37 H 0.97009 * 120.00132 * 359.97438 * 9 7 6
38 38 H 1.09005 * 109.47258 * 295.01889 * 10 9 7
39 39 H 1.09002 * 109.47486 * 55.01695 * 10 9 7
40 40 H 1.09001 * 114.19966 * 254.43497 * 13 11 10
41 41 H 1.08996 * 114.20761 * 27.25849 * 13 11 10
42 42 H 1.09001 * 113.50292 * 219.18357 * 14 13 11
43 43 H 1.08998 * 113.46957 * 88.76568 * 14 13 11
44 44 H 1.08997 * 109.47501 * 300.00101 * 18 16 15
45 45 H 1.09002 * 109.47039 * 60.01217 * 18 16 15
46 46 H 0.97001 * 119.99616 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 8 2.1108 1.0458 0.0000
4 6 2.2606 -1.3050 -0.0006
5 6 3.7648 -1.0255 -0.0011
6 6 4.5298 -2.3504 -0.0011
7 6 6.0114 -2.0751 -0.0009
8 8 6.4157 -0.9316 -0.0014
9 7 6.8873 -3.0994 -0.0003
10 6 8.3276 -2.8317 -0.0008
11 6 9.0916 -4.1513 0.1253
12 1 8.6753 -4.8079 0.8893
13 6 9.3282 -4.8516 -1.2199
14 6 10.6989 -5.1746 -0.6064
15 7 10.5479 -3.9768 0.2334
16 6 11.3786 -3.1031 0.8361
17 8 10.9291 -2.2380 1.5576
18 6 12.8658 -3.2013 0.6136
19 16 13.7034 -1.8995 1.5517
20 6 15.3774 -2.2400 1.1201
21 1 15.6076 -3.0591 0.4547
22 6 16.4002 -1.4558 1.6350
23 7 17.6508 -1.7098 1.3121
24 14 16.0020 -0.0387 2.7851
25 1 16.0040 -0.5246 4.1884
26 1 17.0236 1.0276 2.6291
27 1 14.6618 0.5074 2.4523
28 1 -0.3632 -0.0001 1.0278
29 1 -0.3634 0.8900 -0.5137
30 1 -0.3633 -0.8900 -0.5138
31 1 1.9972 -1.8763 -0.8908
32 1 1.9973 -1.8770 0.8892
33 1 4.0284 -0.4540 0.8889
34 1 4.0278 -0.4537 -0.8910
35 1 4.2662 -2.9222 -0.8908
36 1 4.2668 -2.9218 0.8891
37 1 6.5640 -4.0140 0.0004
38 1 8.6052 -2.3387 -0.9325
39 1 8.5774 -2.1854 0.8407
40 1 8.6960 -5.7237 -1.3869
41 1 9.3690 -4.1762 -2.0744
42 1 11.5213 -5.1047 -1.3185
43 1 10.7118 -6.1045 -0.0379
44 1 13.2199 -4.1759 0.9495
45 1 13.0830 -3.0817 -0.4478
46 1 18.3656 -1.1619 1.6723
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001534681126.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:33:16
Heat of formation + Delta-G solvation = -84.775568 kcal
Electronic energy + Delta-G solvation = -26053.573106 eV
Core-core repulsion = 22070.709907 eV
Total energy + Delta-G solvation = -3982.863200 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.72578 -40.03228 -39.50710 -37.66634 -35.01842 -34.57229 -32.43848 -31.32721
-30.87915 -29.35320 -28.33230 -27.61279 -25.60730 -23.78136 -22.56430 -22.16513
-20.67691 -20.01413 -19.01161 -17.79274 -17.45627 -16.81354 -16.59490 -16.43804
-16.08347 -15.64633 -15.50092 -15.23705 -15.07795 -14.90177 -14.50185 -14.38887
-13.91477 -13.74322 -13.59053 -13.03972 -12.91901 -12.88353 -12.74091 -12.70835
-12.36106 -12.32769 -12.16060 -12.00602 -11.85073 -11.74915 -11.25750 -11.18468
-10.99888 -10.87592 -10.61829 -10.19940 -9.93257 -9.84554 -9.55072 -9.23320
-9.00043 -8.77782 -8.49937 -6.92282 -6.28784 -4.00832 1.55624 2.39768
2.45534 2.84391 2.93036 3.20653 3.34252 3.52715 3.57153 3.62979
3.98010 4.28057 4.33569 4.43914 4.51537 4.51867 4.56215 4.61899
4.70426 4.77628 4.82860 4.83030 4.98311 5.00176 5.05410 5.10499
5.12311 5.16383 5.19409 5.25440 5.39732 5.53381 5.57983 5.69280
5.71388 5.72964 5.85845 5.96016 5.99914 6.00593 6.21793 7.10925
7.22661 7.70183 7.94210 8.03070 8.38150 8.41224 9.17495 10.80337
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.016334 B = 0.001784 C = 0.001628
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1713.815326 B =15691.189683 C =17194.487170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.349 3.651
3 O -0.452 6.452
4 C -0.173 4.173
5 C -0.100 4.100
6 C -0.138 4.138
7 C 0.507 3.493
8 O -0.529 6.529
9 N -0.729 5.729
10 C 0.111 3.889
11 C 0.124 3.876
12 H 0.095 0.905
13 C -0.152 4.152
14 C 0.100 3.900
15 N -0.647 5.647
16 C 0.560 3.440
17 O -0.510 6.510
18 C -0.115 4.115
19 S -0.141 6.141
20 C -0.522 4.522
21 H 0.088 0.912
22 C 0.097 3.903
23 N -0.880 5.880
24 Si 0.856 3.144
25 H -0.267 1.267
26 H -0.273 1.273
27 H -0.235 1.235
28 H 0.094 0.906
29 H 0.083 0.917
30 H 0.084 0.916
31 H 0.099 0.901
32 H 0.099 0.901
33 H 0.077 0.923
34 H 0.076 0.924
35 H 0.094 0.906
36 H 0.094 0.906
37 H 0.398 0.602
38 H 0.072 0.928
39 H 0.089 0.911
40 H 0.090 0.910
41 H 0.098 0.902
42 H 0.083 0.917
43 H 0.086 0.914
44 H 0.095 0.905
45 H 0.097 0.903
46 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -34.192 -11.696 -6.793 36.770
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.262 4.262
2 C 0.224 3.776
3 O -0.325 6.325
4 C -0.210 4.210
5 C -0.138 4.138
6 C -0.178 4.178
7 C 0.293 3.707
8 O -0.405 6.405
9 N -0.382 5.382
10 C -0.013 4.013
11 C 0.020 3.980
12 H 0.113 0.887
13 C -0.190 4.190
14 C -0.023 4.023
15 N -0.387 5.387
16 C 0.349 3.651
17 O -0.384 6.384
18 C -0.265 4.265
19 S 0.086 5.914
20 C -0.669 4.669
21 H 0.106 0.894
22 C -0.112 4.112
23 N -0.516 5.516
24 Si 0.680 3.320
25 H -0.192 1.192
26 H -0.199 1.199
27 H -0.159 1.159
28 H 0.113 0.887
29 H 0.102 0.898
30 H 0.103 0.897
31 H 0.117 0.883
32 H 0.117 0.883
33 H 0.095 0.905
34 H 0.095 0.905
35 H 0.112 0.888
36 H 0.112 0.888
37 H 0.232 0.768
38 H 0.090 0.910
39 H 0.107 0.893
40 H 0.109 0.891
41 H 0.116 0.884
42 H 0.102 0.898
43 H 0.104 0.896
44 H 0.114 0.886
45 H 0.115 0.885
46 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -33.839 -8.771 -5.582 35.400
hybrid contribution 0.569 -1.191 -0.278 1.349
sum -33.270 -9.962 -5.860 35.220
Atomic orbital electron populations
1.22309 0.94546 1.04741 1.04653 1.24646 0.91923 0.90429 0.70621
1.90472 1.71904 1.35187 1.34914 1.22177 0.96514 0.97643 1.04671
1.21173 0.91636 0.95907 1.05096 1.21666 0.91569 1.00164 1.04385
1.20709 0.88685 0.85119 0.76150 1.90791 1.80244 1.21323 1.48111
1.45863 1.06480 1.09377 1.76509 1.21578 0.78743 0.96910 1.04114
1.22765 0.82803 0.95621 0.96845 0.88727 1.23616 0.97314 1.01304
0.96745 1.22935 0.98355 0.88576 0.92407 1.49701 1.06309 1.28624
1.54022 1.19979 0.87497 0.79891 0.77718 1.90731 1.77291 1.34689
1.35666 1.23209 0.92460 1.05345 1.05521 1.84845 1.04309 1.39193
1.63075 1.22298 0.88793 1.20720 1.35101 0.89386 1.24693 0.94016
0.96973 0.95501 1.69938 0.98858 1.39435 1.43418 0.86750 0.80808
0.82542 0.81869 1.19194 1.19867 1.15875 0.88711 0.89771 0.89709
0.88298 0.88264 0.90468 0.90499 0.88772 0.88772 0.76784 0.90967
0.89301 0.89129 0.88374 0.89815 0.89580 0.88625 0.88461 0.91926
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -0.65 10.25 36.01 0.37 -0.29 16
2 C 0.35 2.29 7.27 -29.03 -0.21 2.08 16
3 O -0.45 -5.31 16.72 6.00 0.10 -5.21 16
4 C -0.17 -0.72 5.62 -27.89 -0.16 -0.87 16
5 C -0.10 -0.79 3.79 -26.74 -0.10 -0.89 16
6 C -0.14 -0.79 5.70 -27.88 -0.16 -0.95 16
7 C 0.51 5.37 7.83 -10.99 -0.09 5.28 16
8 O -0.53 -8.69 15.98 5.55 0.09 -8.60 16
9 N -0.73 -6.13 5.55 -60.29 -0.33 -6.47 16
10 C 0.11 1.32 5.47 -4.04 -0.02 1.29 16
11 C 0.12 1.18 4.06 -72.39 -0.29 0.88 16
12 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
13 C -0.15 -0.95 8.02 -26.16 -0.21 -1.16 16
14 C 0.10 0.84 8.42 -8.44 -0.07 0.77 16
15 N -0.65 -8.55 3.57 -177.23 -0.63 -9.19 16
16 C 0.56 10.44 7.97 -10.98 -0.09 10.35 16
17 O -0.51 -11.53 15.46 5.56 0.09 -11.45 16
18 C -0.11 -2.30 5.99 36.01 0.22 -2.09 16
19 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16
20 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16
21 H 0.09 2.67 8.03 -52.49 -0.42 2.24 16
22 C 0.10 2.87 5.50 -17.43 -0.10 2.77 16
23 N -0.88 -26.77 13.97 55.49 0.78 -25.99 16
24 Si 0.86 22.20 27.74 -169.99 -4.71 17.48 16
25 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16
26 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16
27 H -0.23 -6.13 6.74 56.52 0.38 -5.75 16
28 H 0.09 0.21 8.14 -51.92 -0.42 -0.22 16
29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16
30 H 0.08 0.07 8.12 -51.93 -0.42 -0.35 16
31 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16
32 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16
33 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16
34 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16
35 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16
36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16
37 H 0.40 1.70 8.48 -40.82 -0.35 1.35 16
38 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16
39 H 0.09 1.47 7.14 -51.93 -0.37 1.10 16
40 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16
41 H 0.10 0.67 7.95 -51.93 -0.41 0.26 16
42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
44 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16
45 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16
46 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16
LS Contribution 404.17 15.07 6.09 6.09
Total: -1.00 -41.16 404.17 -8.58 -49.75
By element:
Atomic # 1 Polarization: 4.40 SS G_CDS: -7.45 Total: -3.04 kcal
Atomic # 6 Polarization: 2.88 SS G_CDS: -0.60 Total: 2.28 kcal
Atomic # 7 Polarization: -41.45 SS G_CDS: -0.19 Total: -41.64 kcal
Atomic # 8 Polarization: -25.53 SS G_CDS: 0.28 Total: -25.26 kcal
Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal
Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -41.16 -8.58 -49.75 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001534681126.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.030 kcal
(2) G-P(sol) polarization free energy of solvation -41.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.776 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds