Wall clock time and date at job start Sat Apr 11 2020 06:34:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86799 * 119.99996 * 2 1
4 4 H 1.48506 * 109.46929 * 240.00023 * 3 2 1
5 5 H 1.48498 * 109.47197 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.47118 * 120.00402 * 3 2 1
7 7 C 1.38811 * 119.99695 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99966 * 179.97438 * 7 2 1
9 9 N 1.36935 * 120.00141 * 359.97438 * 7 2 1
10 10 C 1.47711 * 134.43764 * 180.02562 * 9 7 2
11 11 C 1.53283 * 85.91084 * 155.86675 * 10 9 7
12 12 C 1.47706 * 134.44043 * 0.03029 * 9 7 2
13 13 C 1.53883 * 114.69261 * 267.36457 * 11 10 9
14 14 C 1.55456 * 101.96269 * 250.24261 * 13 11 10
15 15 H 1.09002 * 111.11066 * 84.36321 * 14 13 11
16 16 N 1.46499 * 111.10825 * 208.44360 * 14 13 11
17 17 C 1.34781 * 119.99892 * 201.54024 * 16 14 13
18 18 O 1.21669 * 119.99808 * 0.02562 * 17 16 14
19 19 C 1.46929 * 119.99945 * 180.02562 * 17 16 14
20 20 C 1.36479 * 126.72998 * 0.02562 * 19 17 16
21 21 N 1.35354 * 109.77736 * 179.97438 * 20 19 17
22 22 H 0.96997 * 124.82321 * 180.02562 * 21 20 19
23 23 C 1.37864 * 110.34943 * 0.02562 * 21 20 19
24 24 C 1.39227 * 133.47157 * 179.97438 * 23 21 20
25 25 C 1.38334 * 118.29377 * 180.02562 * 24 23 21
26 26 C 1.38600 * 119.64496 * 0.02562 * 25 24 23
27 27 N 1.31631 * 121.19593 * 0.02562 * 26 25 24
28 28 C 1.32697 * 121.41857 * 359.71472 * 27 26 25
29 29 C 1.55004 * 101.06302 * 326.40264 * 14 13 11
30 30 O 1.42526 * 115.50625 * 140.20211 * 11 10 9
31 31 H 0.97004 * 120.00092 * 359.97438 * 1 2 3
32 32 H 1.09002 * 113.80103 * 41.61509 * 10 9 7
33 33 H 1.09000 * 113.90630 * 270.12712 * 10 9 7
34 34 H 1.08999 * 113.80360 * 89.88270 * 12 9 7
35 35 H 1.09010 * 113.80101 * 318.38257 * 12 9 7
36 36 H 1.09007 * 110.92976 * 132.08682 * 13 11 10
37 37 H 1.09005 * 110.96892 * 8.41308 * 13 11 10
38 38 H 0.96995 * 120.00496 * 21.54514 * 16 14 13
39 39 H 1.07998 * 125.10841 * 359.96534 * 20 19 17
40 40 H 1.07995 * 120.85546 * 359.97438 * 24 23 21
41 41 H 1.08003 * 120.18038 * 180.02562 * 25 24 23
42 42 H 1.08006 * 119.40151 * 180.02562 * 26 25 24
43 43 H 1.08998 * 110.30602 * 155.03562 * 29 14 13
44 44 H 1.09000 * 110.30182 * 277.08894 * 29 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1040 1.6964 -1.2126
5 1 1.2852 2.7464 0.0006
6 1 3.1040 1.6963 1.2124
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0010
9 7 1.3255 -2.3880 -0.0005
10 6 1.7218 -3.8110 -0.0005
11 6 0.3483 -4.0800 0.6246
12 6 -0.1049 -2.7563 -0.0006
13 6 0.3355 -4.1025 2.1632
14 6 0.0948 -5.6091 2.4614
15 1 1.0311 -6.1671 2.4447
16 7 -0.6005 -5.7897 3.7382
17 6 -0.5245 -6.9692 4.3860
18 8 0.1220 -7.8837 3.9106
19 6 -1.2223 -7.1505 5.6662
20 6 -1.9815 -6.2240 6.3203
21 7 -2.4629 -6.7546 7.4687
22 1 -3.0290 -6.2851 8.1011
23 6 -2.0340 -8.0570 7.6118
24 6 -2.2355 -9.0301 8.5869
25 6 -1.6407 -10.2668 8.4118
26 6 -0.8688 -10.5029 7.2851
27 7 -0.6888 -9.5699 6.3742
28 6 -1.2423 -8.3699 6.4944
29 6 -0.8134 -6.0068 1.2700
30 8 -0.3235 -5.2450 0.1523
31 1 -0.4850 0.8401 0.0004
32 1 2.5580 -4.0348 0.6618
33 1 1.8424 -4.2359 -0.9970
34 1 -0.5314 -2.8641 -0.9979
35 1 -0.7169 -2.1439 0.6617
36 1 -0.4791 -3.4932 2.5548
37 1 1.2937 -3.7743 2.5661
38 1 -1.1157 -5.0605 4.1173
39 1 -2.1698 -5.2186 5.9737
40 1 -2.8398 -8.8246 9.4580
41 1 -1.7771 -11.0441 9.1491
42 1 -0.4066 -11.4699 7.1522
43 1 -0.7260 -7.0742 1.0674
44 1 -1.8505 -5.7463 1.4816
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001053981455.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:28
Heat of formation + Delta-G solvation = 29.853451 kcal
Electronic energy + Delta-G solvation = -28730.416556 eV
Core-core repulsion = 24649.372843 eV
Total energy + Delta-G solvation = -4081.043713 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.66975 -41.50776 -40.07228 -38.84619 -37.84709 -35.62845 -34.11826 -33.79598
-32.05351 -30.99702 -30.33314 -29.62448 -27.29621 -26.75402 -24.83868 -24.64594
-23.81050 -23.44973 -22.31544 -20.97408 -20.32272 -19.32311 -18.76245 -18.07802
-17.73256 -17.35258 -17.01672 -16.87569 -16.55717 -16.31965 -16.28124 -15.75318
-15.60425 -15.37320 -15.14821 -14.56762 -14.48029 -14.15884 -14.00917 -13.82440
-13.72323 -13.58043 -13.36431 -13.20793 -12.82865 -12.81008 -12.55140 -12.53073
-12.34170 -11.95241 -11.75674 -11.55020 -11.27258 -11.07448 -10.85044 -10.35350
-10.19317 -10.07968 -9.50523 -9.18111 -8.95832 -7.90086 -5.24644 -0.07370
0.31050 0.98408 1.48035 1.51500 1.57446 1.91739 2.07875 2.35338
2.46001 2.91614 3.01731 3.25462 3.30459 3.41375 3.50490 3.67235
3.72214 3.75637 3.82408 4.01846 4.05485 4.11854 4.14090 4.34115
4.49456 4.62436 4.68278 4.71026 4.73291 4.80720 4.84007 4.92555
4.98648 5.05183 5.14972 5.16237 5.23126 5.24139 5.34354 5.47056
5.49570 5.87875 5.88993 6.20015 6.43346 6.64133 6.91381 7.20212
7.35024 7.58927 8.53989 9.26946
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.021117 B = 0.002152 C = 0.002041
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1325.628699 B =13007.972382 C =13717.152614
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.951 5.951
2 C -0.063 4.063
3 Si 0.982 3.018
4 H -0.282 1.282
5 H -0.292 1.292
6 H -0.273 1.273
7 C -0.235 4.235
8 H 0.085 0.915
9 N -0.628 5.628
10 C 0.112 3.888
11 C 0.077 3.923
12 C 0.163 3.837
13 C -0.105 4.105
14 C 0.129 3.871
15 H 0.089 0.911
16 N -0.701 5.701
17 C 0.587 3.413
18 O -0.578 6.578
19 C -0.271 4.271
20 C 0.170 3.830
21 N -0.549 5.549
22 H 0.446 0.554
23 C 0.024 3.976
24 C -0.069 4.069
25 C -0.156 4.156
26 C 0.082 3.918
27 N -0.496 5.496
28 C 0.096 3.904
29 C 0.042 3.958
30 O -0.381 6.381
31 H 0.251 0.749
32 H 0.065 0.935
33 H 0.039 0.961
34 H 0.009 0.991
35 H 0.060 0.940
36 H 0.098 0.902
37 H 0.087 0.913
38 H 0.416 0.584
39 H 0.235 0.765
40 H 0.175 0.825
41 H 0.178 0.822
42 H 0.172 0.828
43 H 0.084 0.916
44 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.503 -15.643 24.004 30.516
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.599 5.599
2 C -0.256 4.256
3 Si 0.809 3.191
4 H -0.208 1.208
5 H -0.218 1.218
6 H -0.198 1.198
7 C -0.363 4.363
8 H 0.103 0.897
9 N -0.356 5.356
10 C -0.013 4.013
11 C 0.036 3.964
12 C 0.038 3.962
13 C -0.143 4.143
14 C 0.023 3.977
15 H 0.107 0.893
16 N -0.355 5.355
17 C 0.377 3.623
18 O -0.458 6.458
19 C -0.283 4.283
20 C 0.033 3.967
21 N -0.152 5.152
22 H 0.289 0.711
23 C -0.084 4.084
24 C -0.097 4.097
25 C -0.177 4.177
26 C -0.083 4.083
27 N -0.205 5.205
28 C -0.037 4.037
29 C -0.036 4.036
30 O -0.299 6.299
31 H 0.060 0.940
32 H 0.083 0.917
33 H 0.057 0.943
34 H 0.027 0.973
35 H 0.078 0.922
36 H 0.116 0.884
37 H 0.106 0.894
38 H 0.254 0.746
39 H 0.252 0.748
40 H 0.192 0.808
41 H 0.195 0.805
42 H 0.189 0.811
43 H 0.102 0.898
44 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -9.599 -16.094 22.787 29.503
hybrid contribution -0.312 1.522 0.369 1.597
sum -9.911 -14.572 23.156 29.099
Atomic orbital electron populations
1.69993 1.06354 1.25871 1.57683 1.25630 0.96624 1.00772 1.02592
0.85116 0.77138 0.78581 0.78242 1.20808 1.21848 1.19834 1.19327
0.90792 0.82762 1.43414 0.89731 1.45969 1.03222 1.00244 1.86167
1.22968 0.95786 0.84253 0.98279 1.23762 0.93146 0.85167 0.94301
1.22394 0.87425 0.89872 0.96549 1.22751 1.04658 0.94555 0.92378
1.22385 0.96076 0.95806 0.83481 0.89259 1.45422 1.53373 1.14858
1.21823 1.17543 0.79465 0.81775 0.83496 1.90810 1.43699 1.42441
1.68856 1.19876 1.13767 0.95295 0.99365 1.22845 0.90418 0.99031
0.84454 1.41375 1.43599 1.09631 1.20605 0.71131 1.19245 1.02134
0.88127 0.98913 1.21032 0.99923 0.90895 0.97859 1.22295 0.97922
0.98091 0.99373 1.23237 0.96796 0.98089 0.90203 1.67063 1.21350
1.01201 1.30875 1.19913 0.97470 0.92148 0.94201 1.23838 0.98015
0.96240 0.85495 1.88372 1.74076 1.36045 1.31366 0.94041 0.91690
0.94294 0.97303 0.92219 0.88404 0.89396 0.74558 0.74840 0.80766
0.80473 0.81066 0.89784 0.90441
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -56.24 11.39 21.65 0.25 -55.99 16
2 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16
3 Si 0.98 45.03 29.55 68.60 2.03 47.06 16
4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16
5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16
6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
7 C -0.24 -13.19 10.70 84.03 0.90 -12.29 16
8 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16
9 N -0.63 -32.85 3.67 -732.75 -2.69 -35.54 16
10 C 0.11 4.90 8.37 86.24 0.72 5.62 16
11 C 0.08 3.05 1.68 -10.28 -0.02 3.04 16
12 C 0.16 8.04 7.01 86.23 0.60 8.64 16
13 C -0.11 -3.32 5.98 31.74 0.19 -3.13 16
14 C 0.13 3.68 3.42 46.52 0.16 3.84 16
15 H 0.09 2.91 7.64 -2.39 -0.02 2.90 16
16 N -0.70 -15.84 5.21 -439.01 -2.29 -18.13 16
17 C 0.59 16.85 7.80 86.52 0.67 17.52 16
18 O -0.58 -22.80 16.66 -4.25 -0.07 -22.88 16
19 C -0.27 -6.14 6.27 -18.99 -0.12 -6.26 16
20 C 0.17 1.70 11.33 83.74 0.95 2.65 16
21 N -0.55 -4.07 5.98 -187.01 -1.12 -5.19 16
22 H 0.45 -0.61 8.96 -92.71 -0.83 -1.44 16
23 C 0.02 0.36 7.27 38.98 0.28 0.64 16
24 C -0.07 -0.69 10.19 22.53 0.23 -0.46 16
25 C -0.16 -1.73 10.09 22.38 0.23 -1.51 16
26 C 0.08 1.57 11.16 84.81 0.95 2.51 16
27 N -0.50 -14.37 10.41 -184.61 -1.92 -16.30 16
28 C 0.10 2.44 7.35 41.98 0.31 2.75 16
29 C 0.04 1.27 7.49 72.67 0.54 1.82 16
30 O -0.38 -14.50 11.14 -148.98 -1.66 -16.16 16
31 H 0.25 14.36 8.31 -92.71 -0.77 13.58 16
32 H 0.06 2.59 7.98 -2.39 -0.02 2.57 16
33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16
34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16
35 H 0.06 3.11 7.05 -2.38 -0.02 3.09 16
36 H 0.10 2.80 7.86 -2.38 -0.02 2.78 16
37 H 0.09 2.88 7.84 -2.38 -0.02 2.86 16
38 H 0.42 5.95 7.41 -92.71 -0.69 5.27 16
39 H 0.24 -0.05 7.38 -2.91 -0.02 -0.07 16
40 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16
41 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16
42 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16
43 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16
44 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16
Total: -1.00 -89.84 371.95 -0.86 -90.70
By element:
Atomic # 1 Polarization: 10.55 SS G_CDS: -0.45 Total: 10.10 kcal
Atomic # 6 Polarization: 15.26 SS G_CDS: 7.07 Total: 22.33 kcal
Atomic # 7 Polarization: -123.37 SS G_CDS: -7.77 Total: -131.14 kcal
Atomic # 8 Polarization: -37.30 SS G_CDS: -1.73 Total: -39.03 kcal
Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal
Total: -89.84 -0.86 -90.70 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053981455.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.550 kcal
(2) G-P(sol) polarization free energy of solvation -89.837 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.713 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.853 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds