Wall clock time and date at job start Sat Apr 11 2020 06:35:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31615 * 1
3 3 Si 1.86797 * 119.99954 * 2 1
4 4 H 1.48500 * 109.47424 * 270.00026 * 3 2 1
5 5 H 1.48504 * 109.47467 * 30.00288 * 3 2 1
6 6 H 1.48499 * 109.47189 * 149.99893 * 3 2 1
7 7 C 1.38814 * 120.00231 * 179.97438 * 2 1 3
8 8 H 1.07990 * 120.00115 * 180.02562 * 7 2 1
9 9 N 1.36943 * 119.99484 * 0.02562 * 7 2 1
10 10 C 1.47714 * 134.42917 * 179.97438 * 9 7 2
11 11 C 1.53236 * 85.89364 * 155.90654 * 10 9 7
12 12 C 1.47713 * 134.43732 * 0.02973 * 9 7 2
13 13 C 1.53428 * 114.99077 * 139.52493 * 11 10 9
14 14 C 1.54999 * 103.85299 * 132.14120 * 13 11 10
15 15 H 1.08993 * 110.87233 * 262.74959 * 14 13 11
16 16 N 1.46500 * 110.87059 * 139.05948 * 14 13 11
17 17 C 1.34779 * 119.99637 * 155.00207 * 16 14 13
18 18 O 1.21606 * 120.00356 * 359.97438 * 17 16 14
19 19 C 1.47394 * 119.99635 * 179.97438 * 17 16 14
20 20 N 1.31568 * 126.82603 * 0.02689 * 19 17 16
21 21 N 1.28381 * 111.96521 * 179.97438 * 20 19 17
22 22 H 0.97008 * 124.37264 * 179.97438 * 21 20 19
23 23 C 1.37045 * 111.25955 * 0.02562 * 21 20 19
24 24 C 1.39120 * 134.72730 * 179.97438 * 23 21 20
25 25 C 1.36691 * 119.78743 * 179.97438 * 24 23 21
26 26 C 1.38894 * 120.88860 * 0.02562 * 25 24 23
27 27 C 1.36717 * 120.52694 * 359.97438 * 26 25 24
28 28 C 1.39194 * 119.51112 * 359.73267 * 27 26 25
29 29 C 1.55055 * 102.11374 * 20.90628 * 14 13 11
30 30 O 1.42965 * 115.33509 * 266.49736 * 11 10 9
31 31 H 0.97001 * 120.00307 * 359.97438 * 1 2 3
32 32 H 1.09003 * 113.80450 * 41.66526 * 10 9 7
33 33 H 1.08995 * 113.91770 * 270.16284 * 10 9 7
34 34 H 1.08997 * 113.80898 * 89.84753 * 12 9 7
35 35 H 1.09008 * 113.80504 * 318.34569 * 12 9 7
36 36 H 1.09002 * 110.55368 * 250.73134 * 13 11 10
37 37 H 1.08999 * 110.55385 * 13.40362 * 13 11 10
38 38 H 0.96999 * 120.00110 * 335.00037 * 16 14 13
39 39 H 1.07997 * 120.10938 * 359.97438 * 24 23 21
40 40 H 1.07996 * 119.55386 * 179.97438 * 25 24 23
41 41 H 1.08006 * 119.73775 * 180.02562 * 26 25 24
42 42 H 1.08000 * 120.24652 * 180.02562 * 27 26 25
43 43 H 1.09000 * 110.58597 * 81.94040 * 29 14 13
44 44 H 1.08993 * 110.58432 * 204.70642 * 29 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4977 2.0465 -1.4000
5 1 1.4476 2.6527 0.7001
6 1 3.5477 1.4402 0.7000
7 6 2.0103 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 1.7219 -3.8110 0.0005
11 6 0.3484 -4.0798 0.6245
12 6 -0.1050 -2.7563 -0.0005
13 6 -0.3710 -5.3273 0.0953
14 6 -0.8408 -6.0575 1.3793
15 1 -0.1410 -6.8461 1.6557
16 7 -2.1935 -6.5937 1.2094
17 6 -2.5975 -7.6484 1.9450
18 8 -1.8391 -8.1552 2.7492
19 6 -3.9586 -8.1876 1.7745
20 7 -4.8837 -7.7472 0.9490
21 7 -5.9679 -8.4294 1.0346
22 1 -6.7648 -8.2596 0.5082
23 6 -5.8545 -9.4277 1.9666
24 6 -6.7012 -10.4240 2.4420
25 6 -6.2610 -11.2855 3.4077
26 6 -4.9761 -11.1810 3.9245
27 6 -4.1236 -10.2112 3.4752
28 6 -4.5497 -9.3274 2.4879
29 6 -0.8272 -4.9145 2.4270
30 8 0.3234 -4.1230 2.0533
31 1 -0.4850 0.8400 0.0004
32 1 2.5577 -4.0349 0.6635
33 1 1.8433 -4.2359 -0.9958
34 1 -0.5309 -2.8639 -0.9980
35 1 -0.7174 -2.1440 0.6616
36 1 -1.2262 -5.0444 -0.5186
37 1 0.3166 -5.9532 -0.4735
38 1 -2.7984 -6.1898 0.5677
39 1 -7.7030 -10.5166 2.0493
40 1 -6.9215 -12.0573 3.7743
41 1 -4.6474 -11.8719 4.6869
42 1 -3.1252 -10.1343 3.8800
43 1 -1.7391 -4.3213 2.3589
44 1 -0.7077 -5.3178 3.4325
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001053998841.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:18
Heat of formation + Delta-G solvation = 78.319267 kcal
Electronic energy + Delta-G solvation = -28675.873020 eV
Core-core repulsion = 24596.930943 eV
Total energy + Delta-G solvation = -4078.942077 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.83372 -40.18930 -39.01348 -38.12421 -36.13049 -34.45944 -32.92572 -32.04859
-30.79896 -30.59133 -29.78597 -28.02753 -25.67950 -24.92004 -24.64049 -23.59160
-22.73420 -22.00776 -21.02019 -20.42685 -18.99951 -18.60082 -17.92820 -16.87654
-16.65890 -16.34284 -16.16333 -15.64169 -15.14255 -15.01026 -14.85944 -14.65190
-14.56093 -14.32518 -13.95638 -13.64626 -13.27072 -13.02246 -12.74993 -12.58903
-12.39919 -12.03633 -11.73796 -11.62244 -11.50271 -11.33100 -11.10662 -11.07549
-10.80335 -10.53235 -10.47787 -10.29938 -10.14219 -9.75318 -9.49559 -9.18008
-9.14648 -8.78982 -8.73300 -8.47908 -6.82661 -5.70394 -3.01761 0.44669
0.97206 1.56944 2.27944 2.89616 3.04227 3.43708 3.44223 3.48368
3.50765 3.96330 4.09440 4.28707 4.41806 4.50625 4.60001 4.67866
4.81492 4.98235 5.01328 5.11175 5.17202 5.27631 5.29475 5.40996
5.42418 5.58266 5.63854 5.80628 5.91182 5.98401 6.01142 6.05524
6.12105 6.14236 6.35222 6.39791 6.42689 6.56203 6.59727 6.65902
6.98000 7.23810 7.25861 7.50231 7.56008 7.74557 8.02361 8.04447
9.10512 9.76940 10.64506 11.47148
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.029427 B = 0.002004 C = 0.001944
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 951.290717 B =13967.002099 C =14398.336397
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C -0.010 4.010
3 Si 0.913 3.087
4 H -0.290 1.290
5 H -0.290 1.290
6 H -0.280 1.280
7 C -0.217 4.217
8 H 0.080 0.920
9 N -0.605 5.605
10 C 0.125 3.875
11 C 0.058 3.942
12 C 0.154 3.846
13 C -0.146 4.146
14 C 0.112 3.888
15 H 0.108 0.892
16 N -0.702 5.702
17 C 0.607 3.393
18 O -0.527 6.527
19 C 0.006 3.994
20 N -0.203 5.203
21 N -0.414 5.414
22 H 0.448 0.552
23 C 0.063 3.937
24 C -0.121 4.121
25 C -0.083 4.083
26 C -0.141 4.141
27 C -0.042 4.042
28 C -0.109 4.109
29 C 0.038 3.962
30 O -0.333 6.333
31 H 0.252 0.748
32 H 0.052 0.948
33 H 0.047 0.953
34 H 0.034 0.966
35 H 0.078 0.922
36 H 0.083 0.917
37 H 0.085 0.915
38 H 0.409 0.591
39 H 0.128 0.872
40 H 0.131 0.869
41 H 0.131 0.869
42 H 0.140 0.860
43 H 0.062 0.938
44 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.312 -24.473 3.405 29.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.206 4.206
3 Si 0.743 3.257
4 H -0.217 1.217
5 H -0.217 1.217
6 H -0.206 1.206
7 C -0.345 4.345
8 H 0.098 0.902
9 N -0.331 5.331
10 C -0.002 4.002
11 C 0.017 3.983
12 C 0.028 3.972
13 C -0.185 4.185
14 C 0.007 3.993
15 H 0.126 0.874
16 N -0.354 5.354
17 C 0.391 3.609
18 O -0.401 6.401
19 C -0.165 4.165
20 N -0.033 5.033
21 N -0.133 5.133
22 H 0.293 0.707
23 C -0.050 4.050
24 C -0.142 4.142
25 C -0.104 4.104
26 C -0.160 4.160
27 C -0.062 4.062
28 C -0.116 4.116
29 C -0.040 4.040
30 O -0.250 6.250
31 H 0.062 0.938
32 H 0.071 0.929
33 H 0.064 0.936
34 H 0.052 0.948
35 H 0.096 0.904
36 H 0.101 0.899
37 H 0.103 0.897
38 H 0.245 0.755
39 H 0.146 0.854
40 H 0.149 0.851
41 H 0.149 0.851
42 H 0.158 0.842
43 H 0.080 0.920
44 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -15.703 -23.523 3.334 28.478
hybrid contribution -0.551 0.615 -0.400 0.917
sum -16.253 -22.908 2.934 28.241
Atomic orbital electron populations
1.69810 1.05018 1.25206 1.57003 1.24769 0.95693 0.97497 1.02646
0.86105 0.78670 0.83461 0.77454 1.21716 1.21677 1.20600 1.19001
0.90255 0.81853 1.43370 0.90194 1.45790 1.02090 0.99193 1.86023
1.22696 0.94229 0.86674 0.96555 1.23770 0.98472 0.94360 0.81747
1.22659 0.88753 0.89021 0.96771 1.23072 1.01490 0.97225 0.96742
1.22731 0.83093 0.96909 0.96590 0.87369 1.45803 1.15739 1.32058
1.41835 1.16643 0.83655 0.79802 0.80834 1.90812 1.53560 1.60005
1.35730 1.22764 0.95256 0.98660 0.99832 1.72907 0.93609 1.17650
1.19153 1.43028 1.12909 1.24121 1.33261 0.70686 1.19210 0.96604
0.94266 0.94893 1.19784 0.99133 0.95190 1.00127 1.20770 0.96180
0.98040 0.95372 1.20881 0.93993 0.99472 1.01652 1.20448 1.00454
0.92057 0.93244 1.19415 0.93003 0.98266 1.00891 1.23896 0.90769
0.90786 0.98582 1.88891 1.44766 1.71719 1.19627 0.93751 0.92943
0.93593 0.94797 0.90381 0.89884 0.89664 0.75544 0.85378 0.85066
0.85137 0.84209 0.91999 0.88944
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -28.05 11.39 55.49 0.63 -27.42 16
2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16
3 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16
4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16
6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
7 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16
8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16
9 N -0.61 -16.12 3.70 -181.58 -0.67 -16.79 16
10 C 0.12 2.64 8.34 -3.26 -0.03 2.61 16
11 C 0.06 1.13 1.53 -90.28 -0.14 0.99 16
12 C 0.15 3.68 6.90 -3.27 -0.02 3.65 16
13 C -0.15 -2.10 6.22 -25.45 -0.16 -2.25 16
14 C 0.11 1.54 3.51 -65.79 -0.23 1.31 16
15 H 0.11 1.54 7.55 -51.93 -0.39 1.15 16
16 N -0.70 -8.55 5.19 -52.82 -0.27 -8.82 16
17 C 0.61 8.12 7.81 -12.53 -0.10 8.02 16
18 O -0.53 -8.31 16.05 5.27 0.08 -8.23 16
19 C 0.01 0.08 7.32 -80.76 -0.59 -0.52 16
20 N -0.20 -2.09 11.80 34.46 0.41 -1.69 16
21 N -0.41 -3.21 6.85 32.34 0.22 -2.98 16
22 H 0.45 1.77 8.96 -190.49 -1.71 0.06 16
23 C 0.06 0.55 7.38 -84.22 -0.62 -0.07 16
24 C -0.12 -0.77 10.03 -39.81 -0.40 -1.17 16
25 C -0.08 -0.50 9.96 -39.90 -0.40 -0.89 16
26 C -0.14 -1.01 9.98 -39.89 -0.40 -1.41 16
27 C -0.04 -0.41 9.87 -39.78 -0.39 -0.80 16
28 C -0.11 -1.20 6.34 -105.05 -0.67 -1.87 16
29 C 0.04 0.61 7.42 38.24 0.28 0.89 16
30 O -0.33 -6.83 11.29 -35.23 -0.40 -7.23 16
31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16
32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16
33 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16
34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16
35 H 0.08 2.11 7.18 -51.92 -0.37 1.74 16
36 H 0.08 1.09 7.52 -51.93 -0.39 0.70 16
37 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16
38 H 0.41 4.35 8.14 -40.82 -0.33 4.02 16
39 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16
40 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16
41 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16
42 H 0.14 1.42 7.65 -52.49 -0.40 1.02 16
43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16
LS Contribution 371.79 15.07 5.60 5.60
Total: -1.00 -36.21 371.79 -10.47 -46.68
By element:
Atomic # 1 Polarization: 8.44 SS G_CDS: -6.93 Total: 1.51 kcal
Atomic # 6 Polarization: 5.73 SS G_CDS: -4.12 Total: 1.62 kcal
Atomic # 7 Polarization: -58.02 SS G_CDS: 0.31 Total: -57.70 kcal
Atomic # 8 Polarization: -15.14 SS G_CDS: -0.31 Total: -15.46 kcal
Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -36.21 -10.47 -46.68 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053998841.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 124.998 kcal
(2) G-P(sol) polarization free energy of solvation -36.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.785 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.679 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.319 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds