Wall clock time and date at job start Sat Apr 11 2020 06:35:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31615 * 1
3 3 Si 1.86797 * 119.99954 * 2 1
4 4 H 1.48500 * 109.47424 * 270.00026 * 3 2 1
5 5 H 1.48504 * 109.47467 * 30.00288 * 3 2 1
6 6 H 1.48499 * 109.47189 * 149.99893 * 3 2 1
7 7 C 1.38814 * 120.00231 * 179.97438 * 2 1 3
8 8 H 1.07990 * 120.00115 * 180.02562 * 7 2 1
9 9 N 1.36943 * 119.99484 * 0.02562 * 7 2 1
10 10 C 1.47714 * 134.42917 * 179.97438 * 9 7 2
11 11 C 1.53236 * 85.89364 * 155.90654 * 10 9 7
12 12 C 1.47713 * 134.43732 * 0.02973 * 9 7 2
13 13 C 1.53428 * 114.99077 * 139.52493 * 11 10 9
14 14 C 1.54999 * 103.85299 * 132.14120 * 13 11 10
15 15 H 1.08993 * 110.87233 * 262.74959 * 14 13 11
16 16 N 1.46500 * 110.87059 * 139.05948 * 14 13 11
17 17 C 1.34779 * 119.99637 * 155.00207 * 16 14 13
18 18 O 1.21606 * 120.00356 * 359.97438 * 17 16 14
19 19 C 1.47394 * 119.99635 * 179.97438 * 17 16 14
20 20 N 1.31568 * 126.82603 * 0.02689 * 19 17 16
21 21 N 1.28381 * 111.96521 * 179.97438 * 20 19 17
22 22 H 0.97008 * 124.37264 * 179.97438 * 21 20 19
23 23 C 1.37045 * 111.25955 * 0.02562 * 21 20 19
24 24 C 1.39120 * 134.72730 * 179.97438 * 23 21 20
25 25 C 1.36691 * 119.78743 * 179.97438 * 24 23 21
26 26 C 1.38894 * 120.88860 * 0.02562 * 25 24 23
27 27 C 1.36717 * 120.52694 * 359.97438 * 26 25 24
28 28 C 1.39194 * 119.51112 * 359.73267 * 27 26 25
29 29 C 1.55055 * 102.11374 * 20.90628 * 14 13 11
30 30 O 1.42965 * 115.33509 * 266.49736 * 11 10 9
31 31 H 0.97001 * 120.00307 * 359.97438 * 1 2 3
32 32 H 1.09003 * 113.80450 * 41.66526 * 10 9 7
33 33 H 1.08995 * 113.91770 * 270.16284 * 10 9 7
34 34 H 1.08997 * 113.80898 * 89.84753 * 12 9 7
35 35 H 1.09008 * 113.80504 * 318.34569 * 12 9 7
36 36 H 1.09002 * 110.55368 * 250.73134 * 13 11 10
37 37 H 1.08999 * 110.55385 * 13.40362 * 13 11 10
38 38 H 0.96999 * 120.00110 * 335.00037 * 16 14 13
39 39 H 1.07997 * 120.10938 * 359.97438 * 24 23 21
40 40 H 1.07996 * 119.55386 * 179.97438 * 25 24 23
41 41 H 1.08006 * 119.73775 * 180.02562 * 26 25 24
42 42 H 1.08000 * 120.24652 * 180.02562 * 27 26 25
43 43 H 1.09000 * 110.58597 * 81.94040 * 29 14 13
44 44 H 1.08993 * 110.58432 * 204.70642 * 29 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4977 2.0465 -1.4000
5 1 1.4476 2.6527 0.7001
6 1 3.5477 1.4402 0.7000
7 6 2.0103 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 1.7219 -3.8110 0.0005
11 6 0.3484 -4.0798 0.6245
12 6 -0.1050 -2.7563 -0.0005
13 6 -0.3710 -5.3273 0.0953
14 6 -0.8408 -6.0575 1.3793
15 1 -0.1410 -6.8461 1.6557
16 7 -2.1935 -6.5937 1.2094
17 6 -2.5975 -7.6484 1.9450
18 8 -1.8391 -8.1552 2.7492
19 6 -3.9586 -8.1876 1.7745
20 7 -4.8837 -7.7472 0.9490
21 7 -5.9679 -8.4294 1.0346
22 1 -6.7648 -8.2596 0.5082
23 6 -5.8545 -9.4277 1.9666
24 6 -6.7012 -10.4240 2.4420
25 6 -6.2610 -11.2855 3.4077
26 6 -4.9761 -11.1810 3.9245
27 6 -4.1236 -10.2112 3.4752
28 6 -4.5497 -9.3274 2.4879
29 6 -0.8272 -4.9145 2.4270
30 8 0.3234 -4.1230 2.0533
31 1 -0.4850 0.8400 0.0004
32 1 2.5577 -4.0349 0.6635
33 1 1.8433 -4.2359 -0.9958
34 1 -0.5309 -2.8639 -0.9980
35 1 -0.7174 -2.1440 0.6616
36 1 -1.2262 -5.0444 -0.5186
37 1 0.3166 -5.9532 -0.4735
38 1 -2.7984 -6.1898 0.5677
39 1 -7.7030 -10.5166 2.0493
40 1 -6.9215 -12.0573 3.7743
41 1 -4.6474 -11.8719 4.6869
42 1 -3.1252 -10.1343 3.8800
43 1 -1.7391 -4.3213 2.3589
44 1 -0.7077 -5.3178 3.4325
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001053998841.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:18
Heat of formation + Delta-G solvation = 51.387936 kcal
Electronic energy + Delta-G solvation = -28677.040850 eV
Core-core repulsion = 24596.930943 eV
Total energy + Delta-G solvation = -4080.109907 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.51976 -41.56456 -40.25582 -38.70212 -37.76608 -35.69933 -34.14062 -33.65403
-31.86220 -31.21758 -30.70134 -29.70566 -27.39809 -26.70226 -25.57222 -24.25186
-23.79386 -23.31936 -22.24482 -21.40724 -20.62037 -19.26257 -18.75090 -18.69956
-17.67881 -17.43896 -16.99576 -16.89315 -16.57329 -16.35027 -16.16990 -15.84028
-15.57263 -15.37184 -15.00330 -14.81101 -14.70480 -14.62634 -14.32191 -13.61713
-13.29036 -13.17528 -13.05770 -12.92569 -12.88893 -12.71615 -12.60803 -12.29310
-12.24255 -12.04674 -11.76348 -11.60063 -11.41970 -11.26578 -11.22769 -10.91293
-10.51755 -10.14299 -9.79000 -9.10496 -8.91927 -7.89975 -5.22425 -0.24270
0.35856 0.82631 1.43610 1.46663 1.55116 1.63251 1.97053 2.14829
2.47226 2.80960 2.87050 3.17966 3.27661 3.38462 3.47919 3.59083
3.64596 3.71968 3.74843 4.10129 4.13195 4.14359 4.26779 4.44376
4.48477 4.63839 4.67371 4.74532 4.75229 4.81926 4.88907 4.92408
4.97387 5.05766 5.13645 5.20856 5.23030 5.37970 5.47384 5.51463
5.58638 5.83159 5.93600 6.07561 6.17522 6.34445 6.72760 6.92278
7.03276 7.60736 8.55765 9.27212
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.029427 B = 0.002004 C = 0.001944
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 951.290717 B =13967.002099 C =14398.336397
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.955 5.955
2 C -0.072 4.072
3 Si 0.981 3.019
4 H -0.283 1.283
5 H -0.294 1.294
6 H -0.270 1.270
7 C -0.232 4.232
8 H 0.082 0.918
9 N -0.641 5.641
10 C 0.123 3.877
11 C 0.076 3.924
12 C 0.150 3.850
13 C -0.132 4.132
14 C 0.128 3.872
15 H 0.109 0.891
16 N -0.693 5.693
17 C 0.608 3.392
18 O -0.558 6.558
19 C -0.028 4.028
20 N -0.201 5.201
21 N -0.394 5.394
22 H 0.464 0.536
23 C 0.054 3.946
24 C -0.112 4.112
25 C -0.082 4.082
26 C -0.131 4.131
27 C -0.075 4.075
28 C -0.136 4.136
29 C 0.034 3.966
30 O -0.366 6.366
31 H 0.248 0.752
32 H 0.052 0.948
33 H 0.078 0.922
34 H 0.039 0.961
35 H 0.036 0.964
36 H 0.100 0.900
37 H 0.112 0.888
38 H 0.417 0.583
39 H 0.164 0.836
40 H 0.168 0.832
41 H 0.152 0.848
42 H 0.122 0.878
43 H 0.060 0.940
44 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.002 -26.839 2.849 32.443
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.604 5.604
2 C -0.264 4.264
3 Si 0.809 3.191
4 H -0.209 1.209
5 H -0.221 1.221
6 H -0.195 1.195
7 C -0.360 4.360
8 H 0.100 0.900
9 N -0.367 5.367
10 C -0.001 4.001
11 C 0.035 3.965
12 C 0.025 3.975
13 C -0.171 4.171
14 C 0.022 3.978
15 H 0.127 0.873
16 N -0.345 5.345
17 C 0.394 3.606
18 O -0.435 6.435
19 C -0.198 4.198
20 N -0.033 5.033
21 N -0.117 5.117
22 H 0.314 0.686
23 C -0.059 4.059
24 C -0.133 4.133
25 C -0.103 4.103
26 C -0.150 4.150
27 C -0.095 4.095
28 C -0.143 4.143
29 C -0.043 4.043
30 O -0.284 6.284
31 H 0.056 0.944
32 H 0.070 0.930
33 H 0.096 0.904
34 H 0.056 0.944
35 H 0.055 0.945
36 H 0.118 0.882
37 H 0.130 0.870
38 H 0.255 0.745
39 H 0.181 0.819
40 H 0.185 0.815
41 H 0.170 0.830
42 H 0.140 0.860
43 H 0.078 0.922
44 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -17.402 -25.924 2.759 31.345
hybrid contribution -0.136 1.233 -0.167 1.251
sum -17.539 -24.691 2.592 30.397
Atomic orbital electron populations
1.70009 1.06434 1.25493 1.58469 1.25655 0.96671 1.00948 1.03171
0.85042 0.77582 0.78924 0.77576 1.20940 1.22102 1.19480 1.19408
0.90804 0.83415 1.42395 0.89977 1.46204 1.03565 1.00610 1.86338
1.22943 0.95170 0.83849 0.98179 1.23397 0.97307 0.94352 0.81454
1.22622 0.87309 0.91066 0.96520 1.22982 1.02156 0.94909 0.97007
1.22446 0.83992 0.95956 0.95367 0.87333 1.45653 1.15211 1.31782
1.41887 1.16849 0.84138 0.79483 0.80171 1.90784 1.54639 1.60998
1.37051 1.22530 0.95081 1.00266 1.01890 1.72814 0.94037 1.17812
1.18670 1.43101 1.12730 1.23201 1.32678 0.68646 1.19471 0.96232
0.95084 0.95139 1.20268 1.00138 0.93620 0.99279 1.21228 0.95898
0.98474 0.94667 1.21225 0.94204 0.98372 1.01216 1.20479 1.00669
0.93830 0.94563 1.19678 0.94317 0.98538 1.01767 1.24050 0.89359
0.91189 0.99748 1.88850 1.46433 1.72777 1.20323 0.94356 0.92994
0.90435 0.94356 0.94545 0.88201 0.86961 0.74504 0.81875 0.81480
0.83022 0.85956 0.92195 0.88399
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.90 11.39 21.65 0.25 -59.65 16
2 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16
3 Si 0.98 47.69 29.55 68.60 2.03 49.72 16
4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16
5 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16
6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16
7 C -0.23 -13.72 10.70 84.03 0.90 -12.82 16
8 H 0.08 4.65 7.83 -2.92 -0.02 4.62 16
9 N -0.64 -34.66 3.70 -733.81 -2.72 -37.38 16
10 C 0.12 5.13 8.34 86.22 0.72 5.85 16
11 C 0.08 2.94 1.53 -10.45 -0.02 2.93 16
12 C 0.15 7.37 6.90 86.22 0.60 7.96 16
13 C -0.13 -3.54 6.22 31.42 0.20 -3.34 16
14 C 0.13 3.42 3.51 46.38 0.16 3.59 16
15 H 0.11 2.99 7.55 -2.39 -0.02 2.97 16
16 N -0.69 -16.51 5.19 -439.28 -2.28 -18.78 16
17 C 0.61 16.50 7.81 86.65 0.68 17.18 16
18 O -0.56 -18.21 16.05 -4.05 -0.06 -18.27 16
19 C -0.03 -0.68 7.32 43.86 0.32 -0.36 16
20 N -0.20 -3.97 11.80 -44.88 -0.53 -4.50 16
21 N -0.39 -5.39 6.85 -51.60 -0.35 -5.74 16
22 H 0.46 2.51 8.96 -220.03 -1.97 0.54 16
23 C 0.05 0.84 7.38 39.18 0.29 1.13 16
24 C -0.11 -1.03 10.03 22.12 0.22 -0.81 16
25 C -0.08 -0.69 9.96 22.06 0.22 -0.47 16
26 C -0.13 -1.65 9.98 22.07 0.22 -1.43 16
27 C -0.08 -1.49 9.87 22.14 0.22 -1.28 16
28 C -0.14 -2.99 6.34 -20.14 -0.13 -3.12 16
29 C 0.03 1.11 7.42 72.69 0.54 1.65 16
30 O -0.37 -15.26 11.29 -148.98 -1.68 -16.94 16
31 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16
32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16
33 H 0.08 2.77 8.09 -2.39 -0.02 2.76 16
34 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16
35 H 0.04 2.06 7.18 -2.38 -0.02 2.05 16
36 H 0.10 2.39 7.52 -2.39 -0.02 2.38 16
37 H 0.11 2.50 7.93 -2.39 -0.02 2.48 16
38 H 0.42 8.49 8.14 -92.71 -0.75 7.73 16
39 H 0.16 0.33 8.06 -2.91 -0.02 0.31 16
40 H 0.17 0.22 8.06 -2.91 -0.02 0.19 16
41 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16
42 H 0.12 2.72 7.65 -2.91 -0.02 2.70 16
43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
44 H 0.10 3.03 8.14 -2.39 -0.02 3.02 16
Total: -1.00 -82.37 371.79 -1.41 -83.78
By element:
Atomic # 1 Polarization: 16.61 SS G_CDS: -1.66 Total: 14.95 kcal
Atomic # 6 Polarization: 7.22 SS G_CDS: 5.60 Total: 12.82 kcal
Atomic # 7 Polarization: -120.43 SS G_CDS: -5.63 Total: -126.06 kcal
Atomic # 8 Polarization: -33.47 SS G_CDS: -1.75 Total: -35.21 kcal
Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal
Total: -82.37 -1.41 -83.78 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053998841.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.169 kcal
(2) G-P(sol) polarization free energy of solvation -82.370 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.799 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.388 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds