Wall clock time and date at job start Sat Apr 11 2020 06:35:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38253 * 120.00099 * 2 1
4 4 C 1.38212 * 120.00451 * 179.97438 * 3 2 1
5 5 C 1.38260 * 119.99632 * 0.28445 * 4 3 2
6 6 C 1.38213 * 120.00196 * 359.50453 * 5 4 3
7 7 C 1.50695 * 120.00335 * 180.25909 * 6 5 4
8 8 N 1.46501 * 109.47002 * 270.21302 * 7 6 5
9 9 C 1.46496 * 120.00067 * 89.99765 * 8 7 6
10 10 C 1.34776 * 119.99822 * 269.99841 * 8 7 6
11 11 O 1.21369 * 120.00172 * 5.32700 * 10 8 7
12 12 C 1.49303 * 120.00024 * 185.32988 * 10 8 7
13 13 O 1.21408 * 120.00015 * 5.98072 * 12 10 8
14 14 N 1.34773 * 120.00266 * 185.97919 * 12 10 8
15 15 C 1.40296 * 120.00485 * 180.02562 * 14 12 10
16 16 C 1.40722 * 126.09633 * 359.69039 * 15 14 12
17 17 N 1.30877 * 108.37643 * 179.81639 * 16 15 14
18 18 N 1.40065 * 108.43620 * 0.44440 * 17 16 15
19 19 C 1.37292 * 126.05718 * 179.69435 * 18 17 16
20 20 H 1.07997 * 120.00061 * 180.02562 * 19 18 17
21 21 C 1.39003 * 119.99826 * 0.02562 * 19 18 17
22 22 N 1.31277 * 120.00584 * 0.02562 * 21 19 18
23 23 Si 1.86804 * 119.99867 * 180.02562 * 21 19 18
24 24 H 1.48499 * 109.47264 * 359.97438 * 23 21 19
25 25 H 1.48494 * 109.47234 * 120.00070 * 23 21 19
26 26 H 1.48506 * 109.47074 * 240.00536 * 23 21 19
27 27 C 1.35790 * 126.10378 * 180.02562 * 15 14 12
28 28 C 1.38215 * 119.99971 * 180.02562 * 2 1 3
29 29 H 1.08996 * 109.47316 * 90.00267 * 1 2 3
30 30 H 1.09008 * 109.47065 * 210.00019 * 1 2 3
31 31 H 1.08998 * 109.47641 * 329.99718 * 1 2 3
32 32 H 1.07999 * 119.99888 * 0.02562 * 3 2 1
33 33 H 1.07993 * 120.00219 * 180.02562 * 4 3 2
34 34 H 1.08000 * 120.00276 * 179.72273 * 5 4 3
35 35 H 1.09001 * 109.47556 * 30.21403 * 7 6 5
36 36 H 1.09006 * 109.47139 * 150.21121 * 7 6 5
37 37 H 1.09010 * 109.46934 * 95.25191 * 9 8 7
38 38 H 1.09000 * 109.47272 * 215.24667 * 9 8 7
39 39 H 1.08994 * 109.47244 * 335.25650 * 9 8 7
40 40 H 0.97003 * 120.00303 * 0.02562 * 14 12 10
41 41 H 1.07997 * 125.81268 * 359.97438 * 16 15 14
42 42 H 0.96997 * 120.00604 * 179.97438 * 22 21 19
43 43 H 1.07998 * 126.24922 * 359.95891 * 27 15 14
44 44 H 1.08003 * 120.00120 * 359.97438 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1973 0.0000
4 6 3.5804 1.1974 0.0005
5 6 4.2717 0.0000 -0.0049
6 6 3.5807 -1.1970 -0.0005
7 6 4.3341 -2.5020 -0.0005
8 7 4.5783 -2.9249 -1.3817
9 6 5.7991 -2.5019 -2.0723
10 6 3.6798 -3.7030 -2.0170
11 8 2.6250 -3.9738 -1.4812
12 6 3.9821 -4.2321 -3.3801
13 8 5.0777 -4.0530 -3.8716
14 7 3.0387 -4.9084 -4.0649
15 6 3.3228 -5.4060 -5.3455
16 6 4.5408 -5.2688 -6.0369
17 7 4.4267 -5.8655 -7.1962
18 7 3.1344 -6.3964 -7.2958
19 6 2.6263 -7.0908 -8.3656
20 1 1.6109 -7.4577 -8.3382
21 6 3.4188 -7.3216 -9.4840
22 7 4.6532 -6.8761 -9.5172
23 14 2.7272 -8.2658 -10.9400
24 1 1.3233 -8.6567 -10.6548
25 1 2.7662 -7.4068 -12.1507
26 1 3.5426 -9.4852 -11.1716
27 6 2.4696 -6.1005 -6.1416
28 6 2.1980 -1.1970 -0.0005
29 1 -0.3634 0.0000 -1.0276
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3634 0.8899 0.5139
32 1 1.6582 2.1326 0.0004
33 1 4.1203 2.1326 0.0010
34 1 5.3516 0.0000 -0.0090
35 1 5.2866 -2.3718 0.5134
36 1 3.7450 -3.2617 0.5134
37 1 6.5572 -3.2797 -1.9792
38 1 5.5801 -2.3324 -3.1265
39 1 6.1685 -1.5792 -1.6249
40 1 2.1632 -5.0512 -3.6725
41 1 5.4207 -4.7601 -5.6719
42 1 5.2063 -7.0375 -10.2975
43 1 1.4511 -6.3701 -5.9041
44 1 1.6580 -2.1323 -0.0005
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000746363765.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:02
Heat of formation + Delta-G solvation = 51.770015 kcal
Electronic energy + Delta-G solvation = -28597.095791 eV
Core-core repulsion = 24517.002452 eV
Total energy + Delta-G solvation = -4080.093339 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.73360 -39.79277 -39.24811 -37.88579 -36.08835 -34.27552 -33.21878 -32.95895
-31.75043 -30.32702 -28.15201 -27.59219 -27.18671 -26.48879 -25.06473 -23.37049
-22.12567 -21.21652 -20.83608 -19.62792 -19.37490 -17.72071 -17.26557 -16.84911
-16.56750 -15.98038 -15.62322 -15.49510 -15.11462 -15.07953 -14.88990 -14.11708
-14.04287 -13.87597 -13.64115 -13.35364 -13.29330 -13.00868 -12.90382 -12.84906
-12.61207 -12.35193 -12.15674 -12.00037 -11.74314 -11.49123 -11.36013 -11.30130
-11.14072 -11.09512 -10.83477 -10.53373 -10.27449 -9.24437 -9.17274 -8.91417
-8.86308 -8.83759 -8.72932 -8.13391 -6.77817 -6.61143 -4.28223 1.07593
1.23270 1.66539 2.58210 2.91859 3.03474 3.09251 3.31103 3.55467
3.70636 3.74821 3.89370 4.36642 4.49043 4.54918 4.60694 4.71347
4.91773 4.96119 4.97604 5.03066 5.14079 5.17725 5.28319 5.38834
5.42911 5.50805 5.63638 5.68962 5.89180 5.95806 5.98082 6.19147
6.26524 6.27662 6.35660 6.39044 6.45392 6.75925 6.83951 6.88459
6.92800 7.10150 7.16095 7.70590 7.82717 8.10453 8.18139 8.49040
8.69434 9.30800 9.59460 10.34735
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.020779 B = 0.002149 C = 0.002060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1347.190055 B =13024.060500 C =13588.808136
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.091 4.091
3 C -0.118 4.118
4 C -0.122 4.122
5 C -0.111 4.111
6 C -0.105 4.105
7 C 0.154 3.846
8 N -0.587 5.587
9 C 0.079 3.921
10 C 0.515 3.485
11 O -0.527 6.527
12 C 0.484 3.516
13 O -0.517 6.517
14 N -0.584 5.584
15 C -0.068 4.068
16 C -0.027 4.027
17 N -0.261 5.261
18 N -0.139 5.139
19 C -0.321 4.321
20 H 0.118 0.882
21 C 0.046 3.954
22 N -0.768 5.768
23 Si 0.936 3.064
24 H -0.262 1.262
25 H -0.273 1.273
26 H -0.273 1.273
27 C -0.078 4.078
28 C -0.093 4.093
29 H 0.071 0.929
30 H 0.067 0.933
31 H 0.064 0.936
32 H 0.119 0.881
33 H 0.121 0.879
34 H 0.120 0.880
35 H 0.090 0.910
36 H 0.093 0.907
37 H 0.064 0.936
38 H 0.097 0.903
39 H 0.061 0.939
40 H 0.408 0.592
41 H 0.178 0.822
42 H 0.275 0.725
43 H 0.149 0.851
44 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.876 12.315 18.210 22.170
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.091 4.091
3 C -0.136 4.136
4 C -0.140 4.140
5 C -0.130 4.130
6 C -0.106 4.106
7 C 0.032 3.968
8 N -0.320 5.320
9 C -0.063 4.063
10 C 0.298 3.702
11 O -0.404 6.404
12 C 0.265 3.735
13 O -0.395 6.395
14 N -0.226 5.226
15 C -0.174 4.174
16 C -0.202 4.202
17 N -0.091 5.091
18 N 0.094 4.906
19 C -0.454 4.454
20 H 0.136 0.864
21 C -0.171 4.171
22 N -0.394 5.394
23 Si 0.759 3.241
24 H -0.186 1.186
25 H -0.199 1.199
26 H -0.199 1.199
27 C -0.229 4.229
28 C -0.112 4.112
29 H 0.089 0.911
30 H 0.086 0.914
31 H 0.083 0.917
32 H 0.137 0.863
33 H 0.139 0.861
34 H 0.138 0.862
35 H 0.108 0.892
36 H 0.112 0.888
37 H 0.083 0.917
38 H 0.115 0.885
39 H 0.080 0.920
40 H 0.243 0.757
41 H 0.194 0.806
42 H 0.086 0.914
43 H 0.166 0.834
44 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -1.848 11.979 16.895 20.793
hybrid contribution -1.107 -0.151 0.357 1.173
sum -2.955 11.827 17.252 21.125
Atomic orbital electron populations
1.20793 0.91158 1.02643 1.02523 1.19968 0.96226 0.93142 0.99748
1.21054 0.94336 0.97461 1.00789 1.21085 0.94301 0.97897 1.00670
1.21025 0.99642 0.91989 1.00319 1.20184 0.94184 0.95062 1.01189
1.20451 1.00312 0.93574 0.82451 1.47678 1.21803 1.48837 1.13657
1.22187 0.85381 0.99369 0.99372 1.20341 0.83739 0.79168 0.86956
1.90694 1.23630 1.58448 1.67579 1.19604 0.85553 0.82201 0.86126
1.90619 1.22515 1.57354 1.69044 1.42158 1.15126 1.50418 1.14915
1.17250 0.97576 1.14784 0.87788 1.24142 0.97862 1.04971 0.93267
1.78260 0.96699 1.16766 1.17410 1.44566 1.07168 1.29796 1.09024
1.19965 0.99567 1.33176 0.92646 0.86409 1.25665 0.95192 0.96865
0.99423 1.70210 1.05934 1.34837 1.28416 0.85745 0.79453 0.79024
0.79832 1.18622 1.19860 1.19865 1.21308 0.98865 1.12027 0.90725
1.21138 0.93609 0.98074 0.98374 0.91072 0.91414 0.91697 0.86275
0.86110 0.86180 0.89163 0.88838 0.91694 0.88484 0.92012 0.75684
0.80550 0.91411 0.83393 0.85222
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16
2 C -0.09 -0.94 5.88 -104.63 -0.62 -1.55 16
3 C -0.12 -1.11 9.70 -39.59 -0.38 -1.49 16
4 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16
5 C -0.11 -1.04 9.70 -39.58 -0.38 -1.43 16
6 C -0.10 -1.12 5.46 -104.62 -0.57 -1.69 16
7 C 0.15 1.56 5.47 -5.20 -0.03 1.53 16
8 N -0.59 -7.39 2.86 -183.52 -0.52 -7.91 16
9 C 0.08 0.90 9.23 59.84 0.55 1.45 16
10 C 0.51 7.97 7.72 -11.65 -0.09 7.88 16
11 O -0.53 -8.56 15.30 5.48 0.08 -8.47 16
12 C 0.48 8.76 7.67 -11.66 -0.09 8.67 16
13 O -0.52 -10.13 10.52 5.45 0.06 -10.07 16
14 N -0.58 -11.03 5.45 -10.46 -0.06 -11.09 16
15 C -0.07 -1.57 6.90 -83.92 -0.58 -2.15 16
16 C -0.03 -0.69 10.85 -17.02 -0.18 -0.87 16
17 N -0.26 -7.44 10.39 30.81 0.32 -7.12 16
18 N -0.14 -3.76 3.73 -11.40 -0.04 -3.81 16
19 C -0.32 -8.39 10.25 -14.82 -0.15 -8.54 16
20 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16
21 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16
22 N -0.77 -21.12 11.81 55.50 0.66 -20.46 16
23 Si 0.94 18.68 29.55 -169.99 -5.02 13.65 16
24 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16
25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16
26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16
27 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16
28 C -0.09 -1.07 9.21 -39.58 -0.36 -1.43 16
29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
30 H 0.07 0.53 8.09 -51.92 -0.42 0.11 16
31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16
32 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16
33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16
34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16
35 H 0.09 0.67 8.02 -51.93 -0.42 0.26 16
36 H 0.09 0.98 7.45 -51.93 -0.39 0.60 16
37 H 0.06 0.74 8.11 -51.92 -0.42 0.31 16
38 H 0.10 1.34 5.95 -51.93 -0.31 1.03 16
39 H 0.06 0.53 8.03 -51.93 -0.42 0.11 16
40 H 0.41 6.70 8.31 -40.82 -0.34 6.37 16
41 H 0.18 4.37 5.92 -52.49 -0.31 4.06 16
42 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16
43 H 0.15 2.92 8.06 -52.49 -0.42 2.50 16
44 H 0.13 1.57 7.37 -52.48 -0.39 1.19 16
LS Contribution 377.85 15.07 5.69 5.69
Total: -1.00 -32.38 377.85 -7.53 -39.92
By element:
Atomic # 1 Polarization: 17.79 SS G_CDS: -5.49 Total: 12.31 kcal
Atomic # 6 Polarization: 0.58 SS G_CDS: -3.21 Total: -2.63 kcal
Atomic # 7 Polarization: -50.74 SS G_CDS: 0.35 Total: -50.39 kcal
Atomic # 8 Polarization: -18.69 SS G_CDS: 0.14 Total: -18.55 kcal
Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.65 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -32.38 -7.53 -39.92 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000746363765.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.687 kcal
(2) G-P(sol) polarization free energy of solvation -32.384 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.304 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.770 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds