Wall clock time and date at job start Sat Apr 11 2020 06:35:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38253 * 120.00099 * 2 1
4 4 C 1.38212 * 120.00451 * 179.97438 * 3 2 1
5 5 C 1.38260 * 119.99632 * 0.28445 * 4 3 2
6 6 C 1.38213 * 120.00196 * 359.50453 * 5 4 3
7 7 C 1.50695 * 120.00335 * 180.25909 * 6 5 4
8 8 N 1.46501 * 109.47002 * 270.21302 * 7 6 5
9 9 C 1.46496 * 120.00067 * 89.99765 * 8 7 6
10 10 C 1.34776 * 119.99822 * 269.99841 * 8 7 6
11 11 O 1.21369 * 120.00172 * 5.32700 * 10 8 7
12 12 C 1.49303 * 120.00024 * 185.32988 * 10 8 7
13 13 O 1.21408 * 120.00015 * 5.98072 * 12 10 8
14 14 N 1.34773 * 120.00266 * 185.97919 * 12 10 8
15 15 C 1.40296 * 120.00485 * 180.02562 * 14 12 10
16 16 C 1.40722 * 126.09633 * 359.69039 * 15 14 12
17 17 N 1.30877 * 108.37643 * 179.81639 * 16 15 14
18 18 N 1.40065 * 108.43620 * 0.44440 * 17 16 15
19 19 C 1.37292 * 126.05718 * 179.69435 * 18 17 16
20 20 H 1.07997 * 120.00061 * 180.02562 * 19 18 17
21 21 C 1.39003 * 119.99826 * 0.02562 * 19 18 17
22 22 N 1.31277 * 120.00584 * 0.02562 * 21 19 18
23 23 Si 1.86804 * 119.99867 * 180.02562 * 21 19 18
24 24 H 1.48499 * 109.47264 * 359.97438 * 23 21 19
25 25 H 1.48494 * 109.47234 * 120.00070 * 23 21 19
26 26 H 1.48506 * 109.47074 * 240.00536 * 23 21 19
27 27 C 1.35790 * 126.10378 * 180.02562 * 15 14 12
28 28 C 1.38215 * 119.99971 * 180.02562 * 2 1 3
29 29 H 1.08996 * 109.47316 * 90.00267 * 1 2 3
30 30 H 1.09008 * 109.47065 * 210.00019 * 1 2 3
31 31 H 1.08998 * 109.47641 * 329.99718 * 1 2 3
32 32 H 1.07999 * 119.99888 * 0.02562 * 3 2 1
33 33 H 1.07993 * 120.00219 * 180.02562 * 4 3 2
34 34 H 1.08000 * 120.00276 * 179.72273 * 5 4 3
35 35 H 1.09001 * 109.47556 * 30.21403 * 7 6 5
36 36 H 1.09006 * 109.47139 * 150.21121 * 7 6 5
37 37 H 1.09010 * 109.46934 * 95.25191 * 9 8 7
38 38 H 1.09000 * 109.47272 * 215.24667 * 9 8 7
39 39 H 1.08994 * 109.47244 * 335.25650 * 9 8 7
40 40 H 0.97003 * 120.00303 * 0.02562 * 14 12 10
41 41 H 1.07997 * 125.81268 * 359.97438 * 16 15 14
42 42 H 0.96997 * 120.00604 * 179.97438 * 22 21 19
43 43 H 1.07998 * 126.24922 * 359.95891 * 27 15 14
44 44 H 1.08003 * 120.00120 * 359.97438 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1973 0.0000
4 6 3.5804 1.1974 0.0005
5 6 4.2717 0.0000 -0.0049
6 6 3.5807 -1.1970 -0.0005
7 6 4.3341 -2.5020 -0.0005
8 7 4.5783 -2.9249 -1.3817
9 6 5.7991 -2.5019 -2.0723
10 6 3.6798 -3.7030 -2.0170
11 8 2.6250 -3.9738 -1.4812
12 6 3.9821 -4.2321 -3.3801
13 8 5.0777 -4.0530 -3.8716
14 7 3.0387 -4.9084 -4.0649
15 6 3.3228 -5.4060 -5.3455
16 6 4.5408 -5.2688 -6.0369
17 7 4.4267 -5.8655 -7.1962
18 7 3.1344 -6.3964 -7.2958
19 6 2.6263 -7.0908 -8.3656
20 1 1.6109 -7.4577 -8.3382
21 6 3.4188 -7.3216 -9.4840
22 7 4.6532 -6.8761 -9.5172
23 14 2.7272 -8.2658 -10.9400
24 1 1.3233 -8.6567 -10.6548
25 1 2.7662 -7.4068 -12.1507
26 1 3.5426 -9.4852 -11.1716
27 6 2.4696 -6.1005 -6.1416
28 6 2.1980 -1.1970 -0.0005
29 1 -0.3634 0.0000 -1.0276
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3634 0.8899 0.5139
32 1 1.6582 2.1326 0.0004
33 1 4.1203 2.1326 0.0010
34 1 5.3516 0.0000 -0.0090
35 1 5.2866 -2.3718 0.5134
36 1 3.7450 -3.2617 0.5134
37 1 6.5572 -3.2797 -1.9792
38 1 5.5801 -2.3324 -3.1265
39 1 6.1685 -1.5792 -1.6249
40 1 2.1632 -5.0512 -3.6725
41 1 5.4207 -4.7601 -5.6719
42 1 5.2063 -7.0375 -10.2975
43 1 1.4511 -6.3701 -5.9041
44 1 1.6580 -2.1323 -0.0005
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000746363765.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:01
Heat of formation + Delta-G solvation = 32.101093 kcal
Electronic energy + Delta-G solvation = -28597.948700 eV
Core-core repulsion = 24517.002452 eV
Total energy + Delta-G solvation = -4080.946248 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.12636 -41.33019 -40.29482 -39.27961 -37.21956 -35.89820 -34.96235 -33.76306
-32.52501 -32.28478 -29.91709 -28.49463 -28.03197 -27.60381 -26.77412 -24.67925
-23.00221 -22.82973 -21.94896 -21.32982 -20.73460 -19.40453 -18.65441 -17.92546
-17.55721 -17.45587 -17.04385 -16.77520 -16.43183 -16.14518 -15.99180 -15.61017
-15.41651 -15.10917 -14.86084 -14.81908 -14.52551 -14.08901 -14.04136 -13.70848
-13.53914 -13.49973 -13.33509 -13.18531 -12.94149 -12.86317 -12.84465 -12.70900
-12.33512 -12.08624 -12.03120 -11.90591 -11.83621 -11.07631 -10.87053 -10.40253
-10.14095 -9.91897 -9.70428 -9.51960 -8.61207 -8.49210 -6.26533 0.27051
0.34591 0.49677 1.28181 1.34899 1.42882 1.59719 1.71547 2.03532
2.10821 2.46090 2.53881 2.82563 2.94912 3.07310 3.44582 3.77891
3.87073 4.06153 4.22734 4.26777 4.30345 4.39341 4.47827 4.52452
4.57844 4.62460 4.76852 4.78490 4.83591 4.95724 4.96575 4.98321
5.01408 5.16464 5.21910 5.27405 5.30365 5.38393 5.56670 5.62999
5.71158 5.90123 5.95087 6.13169 6.21402 6.40824 6.66645 6.76054
7.08214 7.41151 7.63084 8.50239
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.020779 B = 0.002149 C = 0.002060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1347.190055 B =13024.060500 C =13588.808136
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.106 4.106
3 C -0.125 4.125
4 C -0.125 4.125
5 C -0.114 4.114
6 C -0.117 4.117
7 C 0.153 3.847
8 N -0.575 5.575
9 C 0.078 3.922
10 C 0.517 3.483
11 O -0.537 6.537
12 C 0.484 3.516
13 O -0.531 6.531
14 N -0.585 5.585
15 C -0.054 4.054
16 C -0.047 4.047
17 N -0.307 5.307
18 N -0.164 5.164
19 C -0.352 4.352
20 H 0.141 0.859
21 C -0.005 4.005
22 N -0.821 5.821
23 Si 1.019 2.981
24 H -0.242 1.242
25 H -0.272 1.272
26 H -0.272 1.272
27 C -0.077 4.077
28 C -0.115 4.115
29 H 0.067 0.933
30 H 0.066 0.934
31 H 0.081 0.919
32 H 0.138 0.862
33 H 0.145 0.855
34 H 0.145 0.855
35 H 0.125 0.875
36 H 0.087 0.913
37 H 0.066 0.934
38 H 0.071 0.929
39 H 0.098 0.902
40 H 0.421 0.579
41 H 0.178 0.822
42 H 0.278 0.722
43 H 0.186 0.814
44 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.604 13.345 19.493 23.896
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.106 4.106
3 C -0.143 4.143
4 C -0.143 4.143
5 C -0.132 4.132
6 C -0.118 4.118
7 C 0.033 3.967
8 N -0.307 5.307
9 C -0.063 4.063
10 C 0.299 3.701
11 O -0.415 6.415
12 C 0.266 3.734
13 O -0.409 6.409
14 N -0.230 5.230
15 C -0.160 4.160
16 C -0.222 4.222
17 N -0.139 5.139
18 N 0.068 4.932
19 C -0.483 4.483
20 H 0.158 0.842
21 C -0.217 4.217
22 N -0.448 5.448
23 Si 0.838 3.162
24 H -0.165 1.165
25 H -0.197 1.197
26 H -0.197 1.197
27 C -0.228 4.228
28 C -0.134 4.134
29 H 0.086 0.914
30 H 0.085 0.915
31 H 0.100 0.900
32 H 0.156 0.844
33 H 0.163 0.837
34 H 0.162 0.838
35 H 0.143 0.857
36 H 0.105 0.895
37 H 0.085 0.915
38 H 0.090 0.910
39 H 0.117 0.883
40 H 0.258 0.742
41 H 0.194 0.806
42 H 0.088 0.912
43 H 0.203 0.797
44 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -2.581 13.037 18.237 22.566
hybrid contribution -0.842 -0.313 0.170 0.915
sum -3.423 12.725 18.407 22.638
Atomic orbital electron populations
1.20814 0.90210 1.03478 1.02535 1.20237 0.97238 0.93265 0.99856
1.21370 0.94941 0.97842 1.00160 1.21456 0.94360 0.98900 0.99594
1.21325 1.00932 0.91495 0.99465 1.20256 0.93925 0.95698 1.01935
1.20686 1.02048 0.93287 0.80723 1.47783 1.21192 1.47234 1.14493
1.22224 0.84766 1.01149 0.98197 1.19807 0.84348 0.80093 0.85839
1.90701 1.24114 1.59275 1.67412 1.20247 0.84975 0.81096 0.87047
1.90619 1.23185 1.57353 1.69764 1.42113 1.16187 1.50972 1.13716
1.17287 0.96332 1.13441 0.88988 1.24261 0.99034 1.05519 0.93431
1.78153 0.98469 1.18314 1.18967 1.44837 1.07095 1.30864 1.10374
1.20674 1.00837 1.33758 0.93074 0.84193 1.26873 0.95190 0.97309
1.02352 1.70373 1.07831 1.36986 1.29657 0.84533 0.79476 0.77040
0.75147 1.16477 1.19679 1.19705 1.21990 1.00259 1.10898 0.89653
1.21179 0.94350 0.97947 0.99932 0.91394 0.91508 0.89990 0.84384
0.83705 0.83766 0.85697 0.89483 0.91499 0.91035 0.88312 0.74174
0.80568 0.91237 0.79709 0.86869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.79 10.01 71.23 0.71 -1.07 16
2 C -0.11 -2.08 5.88 -19.87 -0.12 -2.20 16
3 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16
4 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16
5 C -0.11 -1.79 9.70 22.27 0.22 -1.58 16
6 C -0.12 -2.28 5.46 -19.87 -0.11 -2.39 16
7 C 0.15 2.77 5.47 85.63 0.47 3.24 16
8 N -0.58 -13.55 2.86 -852.89 -2.44 -15.99 16
9 C 0.08 1.64 9.23 127.77 1.18 2.82 16
10 C 0.52 15.64 7.72 87.22 0.67 16.32 16
11 O -0.54 -17.17 15.30 -3.31 -0.05 -17.22 16
12 C 0.48 17.46 7.67 87.22 0.67 18.13 16
13 O -0.53 -21.00 10.52 -3.43 -0.04 -21.04 16
14 N -0.59 -21.98 5.45 -305.33 -1.66 -23.65 16
15 C -0.05 -2.51 6.90 37.82 0.26 -2.25 16
16 C -0.05 -2.49 10.85 85.44 0.93 -1.57 16
17 N -0.31 -18.22 10.39 -56.44 -0.59 -18.80 16
18 N -0.16 -9.04 3.73 -189.98 -0.71 -9.75 16
19 C -0.35 -18.54 10.25 84.02 0.86 -17.68 16
20 H 0.14 6.42 7.83 -2.91 -0.02 6.40 16
21 C -0.01 -0.27 5.50 84.96 0.47 0.20 16
22 N -0.82 -46.70 11.81 21.66 0.26 -46.44 16
23 Si 1.02 38.23 29.55 68.60 2.03 40.25 16
24 H -0.24 -8.17 7.11 99.48 0.71 -7.46 16
25 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16
26 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16
27 C -0.08 -3.62 11.50 83.41 0.96 -2.66 16
28 C -0.12 -2.58 9.21 22.27 0.21 -2.37 16
29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
30 H 0.07 1.03 8.09 -2.38 -0.02 1.01 16
31 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16
32 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16
33 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16
34 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16
35 H 0.13 1.40 8.02 -2.39 -0.02 1.39 16
36 H 0.09 1.72 7.45 -2.38 -0.02 1.70 16
37 H 0.07 1.40 8.11 -2.38 -0.02 1.38 16
38 H 0.07 1.92 5.95 -2.39 -0.01 1.91 16
39 H 0.10 1.35 8.03 -2.39 -0.02 1.33 16
40 H 0.42 13.52 8.31 -92.71 -0.77 12.75 16
41 H 0.18 9.10 5.92 -2.91 -0.02 9.08 16
42 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16
43 H 0.19 6.99 8.06 -2.91 -0.02 6.97 16
44 H 0.11 2.81 7.37 -2.91 -0.02 2.79 16
Total: -1.00 -73.24 377.85 4.89 -68.35
By element:
Atomic # 1 Polarization: 40.60 SS G_CDS: 0.28 Total: 40.87 kcal
Atomic # 6 Polarization: -4.40 SS G_CDS: 7.81 Total: 3.42 kcal
Atomic # 7 Polarization: -109.49 SS G_CDS: -5.14 Total: -114.63 kcal
Atomic # 8 Polarization: -38.17 SS G_CDS: -0.09 Total: -38.26 kcal
Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.25 kcal
Total: -73.24 4.89 -68.35 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000746363765.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.448 kcal
(2) G-P(sol) polarization free energy of solvation -73.240 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.209 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.101 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds