Wall clock time and date at job start Sat Apr 11 2020 06:34:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86798 * 120.00195 * 2 1
4 4 H 1.48505 * 109.47018 * 239.99837 * 3 2 1
5 5 H 1.48496 * 109.47075 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47310 * 119.99580 * 3 2 1
7 7 C 1.38814 * 119.99961 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00367 * 180.02562 * 7 2 1
9 9 N 1.36938 * 119.99766 * 0.02562 * 7 2 1
10 10 C 1.47675 * 134.45819 * 180.02562 * 9 7 2
11 11 C 1.53465 * 85.97741 * 204.29975 * 10 9 7
12 12 C 1.47675 * 134.46514 * 0.02562 * 9 7 2
13 13 C 1.52889 * 113.50236 * 222.32378 * 11 10 9
14 14 N 1.47340 * 108.06258 * 276.93918 * 13 11 10
15 15 C 1.34776 * 121.04992 * 131.65666 * 14 13 11
16 16 O 1.21645 * 119.99748 * 179.52729 * 15 14 13
17 17 C 1.47069 * 120.00346 * 359.52358 * 15 14 13
18 18 C 1.35905 * 125.42606 * 207.44484 * 17 15 14
19 19 C 1.41424 * 107.67617 * 180.02562 * 18 17 15
20 20 C 1.39835 * 134.35357 * 180.02562 * 19 18 17
21 21 N 1.31564 * 120.04527 * 179.97438 * 20 19 18
22 22 C 1.32365 * 122.31796 * 0.02629 * 21 20 19
23 23 C 1.36639 * 121.64771 * 0.02562 * 22 21 20
24 24 C 1.39434 * 119.01112 * 359.93684 * 23 22 21
25 25 N 1.36876 * 134.32818 * 180.40951 * 24 23 22
26 26 H 0.97004 * 125.58500 * 359.93184 * 25 24 23
27 27 C 1.47121 * 117.89435 * 311.63681 * 14 13 11
28 28 C 1.53221 * 108.73400 * 52.21031 * 27 14 13
29 29 O 1.42486 * 113.76979 * 91.27447 * 11 10 9
30 30 H 0.97000 * 120.00063 * 0.02562 * 1 2 3
31 31 H 1.08999 * 113.79388 * 90.03628 * 10 9 7
32 32 H 1.09002 * 113.89737 * 318.57173 * 10 9 7
33 33 H 1.08998 * 113.78920 * 41.42956 * 12 9 7
34 34 H 1.08997 * 113.78713 * 269.96445 * 12 9 7
35 35 H 1.08993 * 109.74646 * 36.58299 * 13 11 10
36 36 H 1.08999 * 109.74470 * 157.25418 * 13 11 10
37 37 H 1.08002 * 126.16062 * 0.02562 * 18 17 15
38 38 H 1.08007 * 119.98132 * 359.97213 * 20 19 18
39 39 H 1.08008 * 119.17426 * 179.97438 * 22 21 20
40 40 H 1.07994 * 120.49390 * 179.97438 * 23 22 21
41 41 H 1.08996 * 109.59597 * 292.43632 * 27 14 13
42 42 H 1.09002 * 109.59169 * 171.98251 * 27 14 13
43 43 H 1.09000 * 109.49249 * 65.83969 * 28 27 14
44 44 H 1.09004 * 109.49057 * 185.88445 * 28 27 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1040 1.6963 -1.2125
5 1 1.2853 2.7464 -0.0006
6 1 3.1039 1.6964 1.2125
7 6 2.0103 -1.2022 0.0005
8 1 3.0903 -1.2022 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 1.7211 -3.8108 0.0015
11 6 0.3485 -4.0812 -0.6294
12 6 -0.1044 -2.7569 -0.0004
13 6 -0.3585 -5.3063 -0.0492
14 7 0.1621 -6.5018 -0.7353
15 6 0.5639 -7.5833 -0.0387
16 8 0.9826 -8.5634 -0.6251
17 6 0.4963 -7.5786 1.4305
18 6 1.2980 -8.2991 2.2583
19 6 0.9094 -8.0137 3.5878
20 6 1.3477 -8.4368 4.8465
21 7 0.7680 -7.9775 5.9346
22 6 -0.2343 -7.1140 5.8917
23 6 -0.7283 -6.6472 4.7063
24 6 -0.1588 -7.0928 3.5141
25 7 -0.3901 -6.8372 2.1895
26 1 -1.0667 -6.2361 1.8403
27 6 0.2290 -6.4776 -2.2048
28 6 0.9787 -5.2151 -2.6426
29 8 0.3586 -4.0675 -2.0542
30 1 -0.4850 0.8400 -0.0004
31 1 1.8376 -4.2342 0.9991
32 1 2.5598 -4.0364 -0.6572
33 1 -0.7164 -2.1429 -0.6611
34 1 -0.5308 -2.8668 0.9967
35 1 -0.1553 -5.3771 1.0192
36 1 -1.4327 -5.2244 -0.2150
37 1 2.0892 -8.9688 1.9553
38 1 2.1627 -9.1411 4.9256
39 1 -0.6733 -6.7705 6.8168
40 1 -1.5471 -5.9432 4.6930
41 1 -0.7801 -6.4647 -2.6165
42 1 0.7603 -7.3603 -2.5610
43 1 2.0164 -5.2762 -2.3146
44 1 0.9451 -5.1305 -3.7288
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001053308535.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:20
Heat of formation + Delta-G solvation = 86.187322 kcal
Electronic energy + Delta-G solvation = -30293.816746 eV
Core-core repulsion = 26215.215853 eV
Total energy + Delta-G solvation = -4078.600893 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.21738 -40.48175 -39.02951 -38.01334 -36.28003 -34.89035 -32.64173 -32.36528
-31.24779 -30.13577 -29.58177 -28.08256 -26.24902 -25.39760 -24.91340 -23.11327
-23.06070 -22.12562 -21.20204 -20.11956 -19.16823 -18.18107 -17.93539 -16.96007
-16.61307 -16.16714 -15.88370 -15.58107 -15.44637 -15.03132 -14.88449 -14.77698
-14.40700 -14.21782 -14.17073 -13.81330 -13.60694 -13.43975 -13.36807 -12.96866
-12.79386 -12.47347 -12.06911 -11.70132 -11.53639 -11.33506 -10.99191 -10.88442
-10.87780 -10.52056 -10.30943 -10.24826 -9.95874 -9.76357 -9.72969 -9.47765
-9.04214 -8.92941 -8.57683 -8.17110 -7.00699 -5.85459 -3.17896 0.43796
1.32994 1.80913 2.46156 2.60174 3.06783 3.35907 3.40024 3.40934
3.74800 3.88782 4.09891 4.31677 4.34660 4.37943 4.69314 4.72160
4.75048 4.86412 4.90440 5.01061 5.04928 5.07180 5.23681 5.24443
5.33470 5.45708 5.47482 5.50759 5.62292 5.71573 5.77491 5.81582
6.06259 6.12357 6.18999 6.27865 6.29487 6.34942 6.59308 6.74414
6.94658 7.02808 7.05932 7.37776 7.64753 7.79867 7.88258 7.89847
8.94936 9.61647 10.44995 11.31976
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.010396 B = 0.003780 C = 0.002986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2692.749553 B = 7406.467673 C = 9375.663966
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C -0.003 4.003
3 Si 0.914 3.086
4 H -0.283 1.283
5 H -0.289 1.289
6 H -0.285 1.285
7 C -0.224 4.224
8 H 0.080 0.920
9 N -0.598 5.598
10 C 0.102 3.898
11 C 0.055 3.945
12 C 0.182 3.818
13 C 0.068 3.932
14 N -0.604 5.604
15 C 0.587 3.413
16 O -0.525 6.525
17 C 0.024 3.976
18 C -0.093 4.093
19 C -0.173 4.173
20 C 0.176 3.824
21 N -0.507 5.507
22 C 0.104 3.896
23 C -0.177 4.177
24 C 0.139 3.861
25 N -0.571 5.571
26 H 0.426 0.574
27 C 0.080 3.920
28 C 0.044 3.956
29 O -0.333 6.333
30 H 0.255 0.745
31 H 0.037 0.963
32 H 0.047 0.953
33 H 0.088 0.912
34 H 0.041 0.959
35 H 0.098 0.902
36 H 0.082 0.918
37 H 0.161 0.839
38 H 0.161 0.839
39 H 0.158 0.842
40 H 0.135 0.865
41 H 0.079 0.921
42 H 0.102 0.898
43 H 0.056 0.944
44 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.289 -16.442 3.746 17.181
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.200 4.200
3 Si 0.744 3.256
4 H -0.210 1.210
5 H -0.214 1.214
6 H -0.211 1.211
7 C -0.352 4.352
8 H 0.098 0.902
9 N -0.324 5.324
10 C -0.025 4.025
11 C 0.013 3.987
12 C 0.056 3.944
13 C -0.056 4.056
14 N -0.337 5.337
15 C 0.374 3.626
16 O -0.401 6.401
17 C -0.085 4.085
18 C -0.121 4.121
19 C -0.180 4.180
20 C 0.008 3.992
21 N -0.216 5.216
22 C -0.043 4.043
23 C -0.200 4.200
24 C 0.021 3.979
25 N -0.181 5.181
26 H 0.271 0.729
27 C -0.042 4.042
28 C -0.034 4.034
29 O -0.250 6.250
30 H 0.065 0.935
31 H 0.054 0.946
32 H 0.066 0.934
33 H 0.106 0.894
34 H 0.058 0.942
35 H 0.116 0.884
36 H 0.101 0.899
37 H 0.178 0.822
38 H 0.178 0.822
39 H 0.175 0.825
40 H 0.153 0.847
41 H 0.097 0.903
42 H 0.120 0.880
43 H 0.074 0.926
44 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -2.998 -16.561 4.024 17.305
hybrid contribution -0.145 1.457 -0.774 1.656
sum -3.143 -15.104 3.250 15.766
Atomic orbital electron populations
1.69767 1.05035 1.25669 1.56348 1.24753 0.95690 0.97521 1.02044
0.86176 0.78517 0.82932 0.77992 1.20990 1.21444 1.21133 1.18929
0.90222 0.81634 1.44383 0.90215 1.45677 1.01640 0.99031 1.86009
1.23029 0.95063 0.87453 0.96950 1.23749 0.97843 0.94873 0.82234
1.22218 0.89260 0.86634 0.96301 1.22966 0.99486 0.85016 0.98149
1.48144 1.63074 1.14890 1.07606 1.17194 0.78003 0.82761 0.84605
1.90834 1.46863 1.33086 1.69327 1.20147 0.97253 0.99905 0.91185
1.20806 1.00750 1.00850 0.89651 1.19206 1.00345 1.03100 0.95382
1.22503 0.96246 0.95070 0.85393 1.67665 1.10095 1.12369 1.31480
1.22101 0.92443 0.92920 0.96878 1.20850 1.04006 1.04942 0.90209
1.18446 0.96951 0.97458 0.85048 1.42722 1.32070 1.39119 1.04140
0.72946 1.22380 1.02386 1.00735 0.78747 1.22934 0.96425 0.84982
0.99012 1.88069 1.78858 1.40584 1.17477 0.93454 0.94551 0.93442
0.89389 0.94161 0.88427 0.89947 0.82172 0.82179 0.82498 0.84702
0.90289 0.87961 0.92585 0.87641
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.48 11.39 55.49 0.63 -25.84 16
2 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16
3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16
4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
7 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16
8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16
9 N -0.60 -14.90 3.70 -180.24 -0.67 -15.57 16
10 C 0.10 2.04 8.08 -3.17 -0.03 2.01 16
11 C 0.06 0.98 1.21 -90.30 -0.11 0.87 16
12 C 0.18 3.99 6.90 -3.18 -0.02 3.96 16
13 C 0.07 0.90 4.68 -3.64 -0.02 0.88 16
14 N -0.60 -7.88 3.03 -173.84 -0.53 -8.41 16
15 C 0.59 8.10 7.64 -12.68 -0.10 8.00 16
16 O -0.52 -8.37 16.42 5.24 0.09 -8.29 16
17 C 0.02 0.30 6.34 -82.22 -0.52 -0.22 16
18 C -0.09 -1.09 10.64 -39.21 -0.42 -1.51 16
19 C -0.17 -2.03 6.21 -106.95 -0.66 -2.69 16
20 C 0.18 1.89 11.29 -17.07 -0.19 1.69 16
21 N -0.51 -5.91 10.33 -13.18 -0.14 -6.04 16
22 C 0.10 1.06 11.09 -17.90 -0.20 0.87 16
23 C -0.18 -1.80 10.09 -39.71 -0.40 -2.20 16
24 C 0.14 1.61 7.32 -84.03 -0.62 0.99 16
25 N -0.57 -6.33 4.80 -7.31 -0.04 -6.37 16
26 H 0.43 4.03 6.27 -40.82 -0.26 3.77 16
27 C 0.08 0.96 6.59 -3.59 -0.02 0.93 16
28 C 0.04 0.60 6.88 37.27 0.26 0.86 16
29 O -0.33 -6.04 10.52 -35.23 -0.37 -6.42 16
30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
31 H 0.04 0.71 7.94 -51.93 -0.41 0.30 16
32 H 0.05 0.96 7.28 -51.93 -0.38 0.58 16
33 H 0.09 2.20 7.17 -51.93 -0.37 1.82 16
34 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16
35 H 0.10 1.22 3.96 -51.93 -0.21 1.02 16
36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
37 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16
38 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16
39 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16
40 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16
41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
42 H 0.10 1.18 7.06 -51.93 -0.37 0.82 16
43 H 0.06 0.81 7.20 -51.93 -0.37 0.43 16
44 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16
LS Contribution 360.01 15.07 5.43 5.43
Total: -1.00 -33.91 360.01 -9.21 -43.12
By element:
Atomic # 1 Polarization: 8.99 SS G_CDS: -5.29 Total: 3.70 kcal
Atomic # 6 Polarization: 11.19 SS G_CDS: -3.30 Total: 7.88 kcal
Atomic # 7 Polarization: -61.50 SS G_CDS: -0.73 Total: -62.24 kcal
Atomic # 8 Polarization: -14.42 SS G_CDS: -0.28 Total: -14.70 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -33.91 -9.21 -43.12 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053308535.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.306 kcal
(2) G-P(sol) polarization free energy of solvation -33.908 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.398 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.187 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds