Wall clock time and date at job start Sat Apr 11 2020 06:34:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86798 * 120.00195 * 2 1
4 4 H 1.48505 * 109.47018 * 239.99837 * 3 2 1
5 5 H 1.48496 * 109.47075 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47310 * 119.99580 * 3 2 1
7 7 C 1.38814 * 119.99961 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00367 * 180.02562 * 7 2 1
9 9 N 1.36938 * 119.99766 * 0.02562 * 7 2 1
10 10 C 1.47675 * 134.45819 * 180.02562 * 9 7 2
11 11 C 1.53465 * 85.97741 * 204.29975 * 10 9 7
12 12 C 1.47675 * 134.46514 * 0.02562 * 9 7 2
13 13 C 1.52889 * 113.50236 * 222.32378 * 11 10 9
14 14 N 1.47340 * 108.06258 * 276.93918 * 13 11 10
15 15 C 1.34776 * 121.04992 * 131.65666 * 14 13 11
16 16 O 1.21645 * 119.99748 * 179.52729 * 15 14 13
17 17 C 1.47069 * 120.00346 * 359.52358 * 15 14 13
18 18 C 1.35905 * 125.42606 * 207.44484 * 17 15 14
19 19 C 1.41424 * 107.67617 * 180.02562 * 18 17 15
20 20 C 1.39835 * 134.35357 * 180.02562 * 19 18 17
21 21 N 1.31564 * 120.04527 * 179.97438 * 20 19 18
22 22 C 1.32365 * 122.31796 * 0.02629 * 21 20 19
23 23 C 1.36639 * 121.64771 * 0.02562 * 22 21 20
24 24 C 1.39434 * 119.01112 * 359.93684 * 23 22 21
25 25 N 1.36876 * 134.32818 * 180.40951 * 24 23 22
26 26 H 0.97004 * 125.58500 * 359.93184 * 25 24 23
27 27 C 1.47121 * 117.89435 * 311.63681 * 14 13 11
28 28 C 1.53221 * 108.73400 * 52.21031 * 27 14 13
29 29 O 1.42486 * 113.76979 * 91.27447 * 11 10 9
30 30 H 0.97000 * 120.00063 * 0.02562 * 1 2 3
31 31 H 1.08999 * 113.79388 * 90.03628 * 10 9 7
32 32 H 1.09002 * 113.89737 * 318.57173 * 10 9 7
33 33 H 1.08998 * 113.78920 * 41.42956 * 12 9 7
34 34 H 1.08997 * 113.78713 * 269.96445 * 12 9 7
35 35 H 1.08993 * 109.74646 * 36.58299 * 13 11 10
36 36 H 1.08999 * 109.74470 * 157.25418 * 13 11 10
37 37 H 1.08002 * 126.16062 * 0.02562 * 18 17 15
38 38 H 1.08007 * 119.98132 * 359.97213 * 20 19 18
39 39 H 1.08008 * 119.17426 * 179.97438 * 22 21 20
40 40 H 1.07994 * 120.49390 * 179.97438 * 23 22 21
41 41 H 1.08996 * 109.59597 * 292.43632 * 27 14 13
42 42 H 1.09002 * 109.59169 * 171.98251 * 27 14 13
43 43 H 1.09000 * 109.49249 * 65.83969 * 28 27 14
44 44 H 1.09004 * 109.49057 * 185.88445 * 28 27 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1040 1.6963 -1.2125
5 1 1.2853 2.7464 -0.0006
6 1 3.1039 1.6964 1.2125
7 6 2.0103 -1.2022 0.0005
8 1 3.0903 -1.2022 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 1.7211 -3.8108 0.0015
11 6 0.3485 -4.0812 -0.6294
12 6 -0.1044 -2.7569 -0.0004
13 6 -0.3585 -5.3063 -0.0492
14 7 0.1621 -6.5018 -0.7353
15 6 0.5639 -7.5833 -0.0387
16 8 0.9826 -8.5634 -0.6251
17 6 0.4963 -7.5786 1.4305
18 6 1.2980 -8.2991 2.2583
19 6 0.9094 -8.0137 3.5878
20 6 1.3477 -8.4368 4.8465
21 7 0.7680 -7.9775 5.9346
22 6 -0.2343 -7.1140 5.8917
23 6 -0.7283 -6.6472 4.7063
24 6 -0.1588 -7.0928 3.5141
25 7 -0.3901 -6.8372 2.1895
26 1 -1.0667 -6.2361 1.8403
27 6 0.2290 -6.4776 -2.2048
28 6 0.9787 -5.2151 -2.6426
29 8 0.3586 -4.0675 -2.0542
30 1 -0.4850 0.8400 -0.0004
31 1 1.8376 -4.2342 0.9991
32 1 2.5598 -4.0364 -0.6572
33 1 -0.7164 -2.1429 -0.6611
34 1 -0.5308 -2.8668 0.9967
35 1 -0.1553 -5.3771 1.0192
36 1 -1.4327 -5.2244 -0.2150
37 1 2.0892 -8.9688 1.9553
38 1 2.1627 -9.1411 4.9256
39 1 -0.6733 -6.7705 6.8168
40 1 -1.5471 -5.9432 4.6930
41 1 -0.7801 -6.4647 -2.6165
42 1 0.7603 -7.3603 -2.5610
43 1 2.0164 -5.2762 -2.3146
44 1 0.9451 -5.1305 -3.7288
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001053308535.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:19
Heat of formation + Delta-G solvation = 62.912585 kcal
Electronic energy + Delta-G solvation = -30294.826014 eV
Core-core repulsion = 26215.215853 eV
Total energy + Delta-G solvation = -4079.610161 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-43.10536 -41.67760 -40.26435 -38.90037 -37.74612 -36.07415 -34.29653 -33.46066
-32.28270 -31.30399 -30.55194 -29.43676 -27.82283 -26.96910 -25.97162 -24.44108
-23.95966 -23.42898 -22.22005 -21.12572 -20.54542 -19.22091 -18.89949 -18.75332
-17.81128 -17.24883 -17.13302 -16.78812 -16.46522 -16.35646 -16.14329 -15.76225
-15.68264 -15.38335 -15.15224 -15.04328 -15.03927 -14.64293 -14.24059 -14.12868
-14.08837 -13.85555 -13.38065 -13.05896 -12.96980 -12.76884 -12.57093 -12.47641
-12.20507 -12.00887 -11.77951 -11.66529 -11.24025 -11.13200 -11.04529 -10.86648
-10.54136 -9.92784 -9.74045 -9.01797 -8.97212 -7.94181 -5.27118 -0.41280
0.49350 0.89904 1.44264 1.46646 1.47974 1.53098 1.68633 2.09204
2.43617 2.59271 2.94205 3.09676 3.19342 3.28293 3.45396 3.54332
3.61483 3.64912 3.76857 3.92120 4.01608 4.08470 4.15734 4.17756
4.32081 4.40350 4.47620 4.53082 4.61022 4.64543 4.70437 4.77453
4.84166 4.88953 4.93818 5.09557 5.11509 5.17458 5.30749 5.44674
5.45105 5.79326 5.87647 5.98676 6.16415 6.28898 6.74799 6.87914
7.10638 7.55665 8.47241 9.22265
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.010396 B = 0.003780 C = 0.002986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2692.749553 B = 7406.467673 C = 9375.663966
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.948 5.948
2 C -0.057 4.057
3 Si 0.976 3.024
4 H -0.279 1.279
5 H -0.290 1.290
6 H -0.278 1.278
7 C -0.241 4.241
8 H 0.077 0.923
9 N -0.630 5.630
10 C 0.102 3.898
11 C 0.081 3.919
12 C 0.178 3.822
13 C 0.081 3.919
14 N -0.603 5.603
15 C 0.591 3.409
16 O -0.549 6.549
17 C 0.006 3.994
18 C -0.090 4.090
19 C -0.190 4.190
20 C 0.173 3.827
21 N -0.527 5.527
22 C 0.099 3.901
23 C -0.182 4.182
24 C 0.128 3.872
25 N -0.565 5.565
26 H 0.432 0.568
27 C 0.083 3.917
28 C 0.042 3.958
29 O -0.362 6.362
30 H 0.251 0.749
31 H 0.049 0.951
32 H 0.042 0.958
33 H 0.052 0.948
34 H 0.050 0.950
35 H 0.107 0.893
36 H 0.109 0.891
37 H 0.172 0.828
38 H 0.185 0.815
39 H 0.183 0.817
40 H 0.157 0.843
41 H 0.098 0.902
42 H 0.110 0.890
43 H 0.045 0.955
44 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.496 -17.458 4.240 18.302
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.596 5.596
2 C -0.250 4.250
3 Si 0.804 3.196
4 H -0.206 1.206
5 H -0.216 1.216
6 H -0.204 1.204
7 C -0.369 4.369
8 H 0.095 0.905
9 N -0.356 5.356
10 C -0.023 4.023
11 C 0.039 3.961
12 C 0.053 3.947
13 C -0.043 4.043
14 N -0.335 5.335
15 C 0.380 3.620
16 O -0.427 6.427
17 C -0.103 4.103
18 C -0.118 4.118
19 C -0.196 4.196
20 C 0.006 3.994
21 N -0.237 5.237
22 C -0.048 4.048
23 C -0.205 4.205
24 C 0.010 3.990
25 N -0.176 5.176
26 H 0.278 0.722
27 C -0.038 4.038
28 C -0.034 4.034
29 O -0.280 6.280
30 H 0.060 0.940
31 H 0.066 0.934
32 H 0.061 0.939
33 H 0.070 0.930
34 H 0.068 0.932
35 H 0.125 0.875
36 H 0.127 0.873
37 H 0.189 0.811
38 H 0.201 0.799
39 H 0.200 0.800
40 H 0.175 0.825
41 H 0.116 0.884
42 H 0.128 0.872
43 H 0.064 0.936
44 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -3.204 -17.603 4.511 18.452
hybrid contribution -0.034 1.714 -0.907 1.940
sum -3.238 -15.888 3.605 16.611
Atomic orbital electron populations
1.69939 1.06192 1.25873 1.57561 1.25523 0.96575 1.00499 1.02432
0.85201 0.77297 0.78981 0.78128 1.20553 1.21597 1.20386 1.19262
0.90590 0.83295 1.43714 0.90504 1.46018 1.03251 1.00043 1.86307
1.23152 0.96525 0.85082 0.97583 1.23209 0.95828 0.94764 0.82331
1.22152 0.87588 0.88497 0.96481 1.22818 1.00299 0.82956 0.98237
1.48153 1.62837 1.14487 1.08054 1.17282 0.77315 0.82436 0.85011
1.90820 1.48028 1.33931 1.69949 1.20035 0.98403 1.01176 0.90696
1.21034 1.00640 1.00404 0.89731 1.19374 1.00880 1.03730 0.95665
1.22914 0.96537 0.95052 0.84903 1.67728 1.10891 1.13154 1.31904
1.22588 0.91942 0.92257 0.98032 1.21127 1.04508 1.05210 0.89604
1.18743 0.97180 0.97615 0.85490 1.42615 1.32010 1.39038 1.03912
0.72212 1.22432 1.03345 0.99867 0.78181 1.23165 0.95722 0.84336
1.00218 1.88019 1.79403 1.43102 1.17512 0.94017 0.93371 0.93945
0.93002 0.93195 0.87515 0.87297 0.81105 0.79857 0.80026 0.82538
0.88358 0.87227 0.93648 0.85136
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -55.54 11.39 21.65 0.25 -55.30 16
2 C -0.06 -3.18 5.50 84.86 0.47 -2.72 16
3 Si 0.98 45.32 29.55 68.60 2.03 47.35 16
4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16
5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16
6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16
7 C -0.24 -13.52 10.70 84.03 0.90 -12.62 16
8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16
9 N -0.63 -31.79 3.70 -728.99 -2.70 -34.49 16
10 C 0.10 4.07 8.08 86.30 0.70 4.77 16
11 C 0.08 2.80 1.21 -10.49 -0.01 2.78 16
12 C 0.18 7.90 6.90 86.30 0.60 8.50 16
13 C 0.08 1.98 4.68 86.18 0.40 2.38 16
14 N -0.60 -14.49 3.03 -822.16 -2.49 -16.98 16
15 C 0.59 15.32 7.64 86.56 0.66 15.98 16
16 O -0.55 -16.75 16.42 -4.17 -0.07 -16.81 16
17 C 0.01 0.13 6.34 39.91 0.25 0.38 16
18 C -0.09 -2.00 10.64 22.51 0.24 -1.76 16
19 C -0.19 -4.15 6.21 -21.37 -0.13 -4.29 16
20 C 0.17 3.45 11.29 85.12 0.96 4.41 16
21 N -0.53 -11.41 10.33 -195.61 -2.02 -13.43 16
22 C 0.10 1.82 11.09 84.24 0.93 2.75 16
23 C -0.18 -3.32 10.09 22.18 0.22 -3.09 16
24 C 0.13 2.74 7.32 39.38 0.29 3.03 16
25 N -0.57 -11.52 4.80 -177.04 -0.85 -12.37 16
26 H 0.43 7.25 6.27 -92.71 -0.58 6.67 16
27 C 0.08 1.81 6.59 86.33 0.57 2.38 16
28 C 0.04 1.09 6.88 72.06 0.50 1.59 16
29 O -0.36 -12.90 10.52 -148.98 -1.57 -14.47 16
30 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16
31 H 0.05 1.83 7.94 -2.39 -0.02 1.81 16
32 H 0.04 1.72 7.28 -2.39 -0.02 1.70 16
33 H 0.05 2.67 7.17 -2.39 -0.02 2.65 16
34 H 0.05 2.09 8.09 -2.39 -0.02 2.07 16
35 H 0.11 2.45 3.96 -2.39 -0.01 2.44 16
36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16
37 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16
38 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16
39 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16
40 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16
41 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16
42 H 0.11 2.29 7.06 -2.39 -0.02 2.28 16
43 H 0.05 1.26 7.20 -2.39 -0.02 1.25 16
44 H 0.13 2.67 8.14 -2.38 -0.02 2.65 16
Total: -1.00 -73.88 360.01 0.60 -73.28
By element:
Atomic # 1 Polarization: 18.28 SS G_CDS: 0.48 Total: 18.75 kcal
Atomic # 6 Polarization: 16.93 SS G_CDS: 7.54 Total: 24.48 kcal
Atomic # 7 Polarization: -124.76 SS G_CDS: -7.81 Total: -132.57 kcal
Atomic # 8 Polarization: -29.65 SS G_CDS: -1.64 Total: -31.29 kcal
Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal
Total: -73.88 0.60 -73.28 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053308535.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.194 kcal
(2) G-P(sol) polarization free energy of solvation -73.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.281 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.913 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds