Wall clock time and date at job start Sat Apr 11 2020 06:35:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86799 * 120.00522 * 2 1
4 4 H 1.48504 * 109.46782 * 270.00152 * 3 2 1
5 5 H 1.48500 * 109.46680 * 29.99648 * 3 2 1
6 6 H 1.48496 * 109.47504 * 149.99779 * 3 2 1
7 7 C 1.37881 * 119.99832 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99983 * 180.02562 * 7 2 1
9 9 C 1.50699 * 119.99792 * 0.02562 * 7 2 1
10 10 C 1.50699 * 109.47098 * 180.02562 * 9 7 2
11 11 C 1.38294 * 119.92676 * 89.99478 * 10 9 7
12 12 C 1.38101 * 120.07497 * 179.97438 * 11 10 9
13 13 C 1.38927 * 119.92725 * 0.02932 * 12 11 10
14 14 N 1.39716 * 120.07475 * 180.02562 * 13 12 11
15 15 C 1.34772 * 120.00615 * 35.09174 * 14 13 12
16 16 O 1.21385 * 119.99557 * 355.37966 * 15 14 13
17 17 C 1.49348 * 120.00665 * 175.37958 * 15 14 13
18 18 O 1.21372 * 119.99582 * 0.02562 * 17 15 14
19 19 N 1.34772 * 120.00665 * 179.97438 * 17 15 14
20 20 C 1.46498 * 120.00355 * 180.02562 * 19 17 15
21 21 C 1.53003 * 109.47310 * 180.02562 * 20 19 17
22 22 N 1.46498 * 109.47310 * 179.97438 * 21 20 19
23 23 C 1.34945 * 126.04157 * 124.99840 * 22 21 20
24 24 C 1.35314 * 107.74832 * 179.97438 * 23 22 21
25 25 C 1.39868 * 107.91828 * 359.97438 * 24 23 22
26 26 N 1.30830 * 108.20213 * 359.74246 * 25 24 23
27 27 C 1.38930 * 119.84332 * 0.26859 * 13 12 11
28 28 C 1.38094 * 119.92572 * 359.43047 * 27 13 12
29 29 H 0.97003 * 119.99826 * 0.02562 * 1 2 3
30 30 H 1.08996 * 109.47382 * 59.99745 * 9 7 2
31 31 H 1.09002 * 109.47284 * 299.99254 * 9 7 2
32 32 H 1.08000 * 119.95822 * 0.02770 * 11 10 9
33 33 H 1.08001 * 120.03334 * 180.02562 * 12 11 10
34 34 H 0.97006 * 119.99792 * 215.08908 * 14 13 12
35 35 H 0.97002 * 119.99713 * 359.97438 * 19 17 15
36 36 H 1.08997 * 109.47341 * 59.99530 * 20 19 17
37 37 H 1.09007 * 109.46839 * 299.99686 * 20 19 17
38 38 H 1.08997 * 109.47451 * 59.99415 * 21 20 19
39 39 H 1.09007 * 109.46764 * 299.99550 * 21 20 19
40 40 H 1.08003 * 126.11990 * 359.97438 * 23 22 21
41 41 H 1.08000 * 126.03879 * 180.02562 * 24 23 22
42 42 H 1.08001 * 125.89401 * 180.02562 * 25 24 23
43 43 H 1.08001 * 120.03166 * 179.70227 * 27 13 12
44 44 H 1.08005 * 119.96103 * 180.27591 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2509 -2.4991 0.0005
10 6 2.2301 -3.6446 0.0018
11 6 2.6776 -4.1685 1.2009
12 6 3.5746 -5.2185 1.2057
13 6 4.0279 -5.7483 0.0040
14 7 4.9349 -6.8110 0.0052
15 6 4.8611 -7.7591 0.9603
16 8 4.0618 -7.6463 1.8668
17 6 5.7626 -8.9484 0.9033
18 8 6.5621 -9.0610 -0.0029
19 7 5.6891 -9.8962 1.8586
20 6 6.5738 -11.0626 1.8030
21 6 6.2875 -11.9772 2.9957
22 7 7.1718 -13.1439 2.9397
23 6 8.0035 -13.5575 3.9186
24 6 8.6414 -14.6660 3.4769
25 6 8.1835 -14.9396 2.1840
26 7 7.2982 -14.0313 1.8632
27 6 3.5810 -5.2155 -1.1987
28 6 2.6793 -4.1696 -1.1962
29 1 -0.4850 0.8401 -0.0004
30 1 0.6246 -2.5571 -0.8896
31 1 0.6240 -2.5567 0.8904
32 1 2.3245 -3.7564 2.1347
33 1 3.9232 -5.6274 2.1425
34 1 5.6178 -6.8665 -0.6814
35 1 5.0508 -9.8057 2.5835
36 1 7.6121 -10.7330 1.8384
37 1 6.3972 -11.6086 0.8762
38 1 5.2492 -12.3068 2.9599
39 1 6.4638 -11.4314 3.9226
40 1 8.1361 -13.0877 4.8821
41 1 9.3740 -15.2389 4.0261
42 1 8.5020 -15.7617 1.5601
43 1 3.9351 -5.6219 -2.1346
44 1 2.3281 -3.7580 -2.1309
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001337008660.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:08
Heat of formation + Delta-G solvation = 40.344688 kcal
Electronic energy + Delta-G solvation = -27006.119533 eV
Core-core repulsion = 22925.530754 eV
Total energy + Delta-G solvation = -4080.588778 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.63316 -41.12137 -39.47110 -38.07403 -36.44134 -35.09746 -33.49368 -33.04332
-30.70394 -30.61733 -30.40120 -29.19276 -27.12275 -25.37707 -23.82519 -22.72191
-22.45332 -21.61141 -21.29020 -20.75994 -20.14499 -18.99220 -17.78663 -17.36849
-16.63361 -16.57814 -16.31854 -16.11877 -15.63757 -15.04434 -15.01199 -14.71603
-14.51290 -14.27618 -14.21122 -13.89548 -13.62882 -13.25029 -13.14012 -12.95002
-12.80061 -12.64822 -12.32096 -12.11509 -11.92668 -11.43753 -11.32128 -11.13363
-10.87701 -10.63376 -10.43112 -10.13564 -9.96308 -9.86083 -9.81407 -9.48249
-9.34845 -9.11622 -8.45093 -8.38218 -7.53417 -6.06371 -4.10654 0.98877
1.36628 1.65201 1.93815 1.98870 2.26619 2.39771 2.95912 3.28993
3.34765 3.35472 3.39487 3.78945 4.04915 4.15038 4.33269 4.34125
4.46662 4.50231 4.55518 4.95024 5.09518 5.24810 5.27655 5.29309
5.35200 5.46770 5.53545 5.59644 5.75999 5.92052 5.98407 6.10850
6.15767 6.44671 6.45690 6.55770 6.69886 6.73252 7.07876 7.11116
7.18783 7.20136 7.41204 7.46590 7.59673 7.80211 7.80903 7.89208
8.28740 8.94626 9.53402 11.03274
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.037357 B = 0.001476 C = 0.001464
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 749.349452 B =18963.957221 C =19118.009160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.059 3.941
3 Si 0.895 3.105
4 H -0.280 1.280
5 H -0.286 1.286
6 H -0.273 1.273
7 C -0.513 4.513
8 H 0.058 0.942
9 C 0.047 3.953
10 C -0.035 4.035
11 C -0.110 4.110
12 C -0.113 4.113
13 C 0.091 3.909
14 N -0.632 5.632
15 C 0.503 3.497
16 O -0.503 6.503
17 C 0.515 3.485
18 O -0.513 6.513
19 N -0.702 5.702
20 C 0.108 3.892
21 C 0.124 3.876
22 N -0.374 5.374
23 C 0.056 3.944
24 C -0.273 4.273
25 C 0.048 3.952
26 N -0.293 5.293
27 C -0.134 4.134
28 C -0.109 4.109
29 H 0.262 0.738
30 H 0.030 0.970
31 H 0.030 0.970
32 H 0.124 0.876
33 H 0.129 0.871
34 H 0.418 0.582
35 H 0.415 0.585
36 H 0.080 0.920
37 H 0.090 0.910
38 H 0.096 0.904
39 H 0.106 0.894
40 H 0.175 0.825
41 H 0.149 0.851
42 H 0.185 0.815
43 H 0.118 0.882
44 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.508 -27.607 7.198 32.472
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.143 4.143
3 Si 0.723 3.277
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.198 1.198
7 C -0.551 4.551
8 H 0.076 0.924
9 C 0.010 3.990
10 C -0.036 4.036
11 C -0.129 4.129
12 C -0.133 4.133
13 C -0.001 4.001
14 N -0.277 5.277
15 C 0.284 3.716
16 O -0.377 6.377
17 C 0.296 3.704
18 O -0.387 6.387
19 N -0.358 5.358
20 C -0.016 4.016
21 C 0.002 3.998
22 N -0.157 5.157
23 C -0.089 4.089
24 C -0.302 4.302
25 C -0.139 4.139
26 N -0.114 5.114
27 C -0.154 4.154
28 C -0.127 4.127
29 H 0.072 0.928
30 H 0.048 0.952
31 H 0.048 0.952
32 H 0.142 0.858
33 H 0.147 0.853
34 H 0.255 0.745
35 H 0.252 0.748
36 H 0.098 0.902
37 H 0.108 0.892
38 H 0.114 0.886
39 H 0.125 0.875
40 H 0.193 0.807
41 H 0.167 0.833
42 H 0.201 0.799
43 H 0.136 0.864
44 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 14.486 -26.994 6.306 31.278
hybrid contribution 1.126 0.615 0.667 1.446
sum 15.612 -26.380 6.973 31.436
Atomic orbital electron populations
1.69957 1.06039 1.26853 1.50383 1.25007 0.94874 0.99252 0.95131
0.86535 0.79833 0.83146 0.78186 1.20577 1.21155 1.19813 1.21059
0.93067 0.89826 1.51171 0.92417 1.18376 0.92568 0.89537 0.98536
1.20797 0.95984 0.94923 0.91861 1.21024 0.97575 0.95612 0.98641
1.21117 0.99045 0.96416 0.96726 1.17519 0.96682 0.91079 0.94809
1.42981 1.32818 1.22148 1.29792 1.19960 0.84370 0.83719 0.83537
1.90792 1.36838 1.77071 1.33047 1.20076 0.83958 0.83897 0.82485
1.90805 1.36938 1.77353 1.33639 1.45478 1.40276 1.21597 1.28417
1.21622 0.94951 0.85561 0.99467 1.21764 0.94469 0.83698 0.99882
1.48459 1.33176 1.22036 1.12037 1.22634 0.93564 0.97498 0.95222
1.21566 1.08975 1.01873 0.97831 1.23969 0.95289 0.98396 0.96222
1.77419 1.21547 1.03336 1.09117 1.20804 0.99684 0.99314 0.95555
1.20920 0.97298 0.95783 0.98722 0.92814 0.95195 0.95183 0.85841
0.85319 0.74498 0.74792 0.90194 0.89190 0.88604 0.87535 0.80742
0.83337 0.79855 0.86433 0.85713
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16
4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16
7 C -0.51 -14.14 9.09 -34.44 -0.31 -14.46 16
8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16
9 C 0.05 1.18 5.10 -29.04 -0.15 1.03 16
10 C -0.04 -0.75 5.07 -104.58 -0.53 -1.28 16
11 C -0.11 -2.15 9.69 -39.61 -0.38 -2.53 16
12 C -0.11 -1.98 8.69 -39.38 -0.34 -2.33 16
13 C 0.09 1.45 6.30 -83.75 -0.53 0.93 16
14 N -0.63 -8.23 5.32 -10.30 -0.05 -8.28 16
15 C 0.50 6.38 7.73 -11.64 -0.09 6.29 16
16 O -0.50 -7.28 13.91 5.47 0.08 -7.21 16
17 C 0.52 5.60 7.89 -11.64 -0.09 5.50 16
18 O -0.51 -6.67 16.48 5.48 0.09 -6.57 16
19 N -0.70 -5.31 5.55 -60.76 -0.34 -5.65 16
20 C 0.11 0.73 5.87 -4.04 -0.02 0.71 16
21 C 0.12 0.55 6.62 -4.04 -0.03 0.52 16
22 N -0.37 -2.54 3.68 -61.36 -0.23 -2.76 16
23 C 0.06 0.30 11.45 -17.23 -0.20 0.10 16
24 C -0.27 -1.56 10.80 -40.01 -0.43 -1.99 16
25 C 0.05 0.33 12.03 -17.37 -0.21 0.12 16
26 N -0.29 -2.65 12.42 30.62 0.38 -2.27 16
27 C -0.13 -2.13 9.97 -39.38 -0.39 -2.52 16
28 C -0.11 -2.03 9.69 -39.61 -0.38 -2.42 16
29 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16
30 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16
31 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16
32 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16
33 H 0.13 2.15 6.22 -52.49 -0.33 1.83 16
34 H 0.42 4.59 8.30 -40.82 -0.34 4.25 16
35 H 0.42 2.41 7.94 -40.82 -0.32 2.09 16
36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16
38 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.11 0.18 8.07 -51.92 -0.42 -0.24 16
40 H 0.18 0.32 8.06 -52.48 -0.42 -0.10 16
41 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16
42 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16
43 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16
44 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16
LS Contribution 388.48 15.07 5.85 5.85
Total: -1.00 -34.57 388.48 -8.29 -42.85
By element:
Atomic # 1 Polarization: 9.48 SS G_CDS: -5.59 Total: 3.89 kcal
Atomic # 6 Polarization: -6.58 SS G_CDS: -4.19 Total: -10.77 kcal
Atomic # 7 Polarization: -44.82 SS G_CDS: 0.50 Total: -44.32 kcal
Atomic # 8 Polarization: -13.95 SS G_CDS: 0.17 Total: -13.78 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -34.57 -8.29 -42.85 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001337008660.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.198 kcal
(2) G-P(sol) polarization free energy of solvation -34.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.630 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds