Wall clock time and date at job start Sat Apr 11 2020 06:34:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52998 * 109.47210 * 2 1
4 4 C 1.50704 * 109.46585 * 119.99799 * 2 1 3
5 5 N 1.33466 * 125.49959 * 119.97716 * 4 2 1
6 6 C 1.30325 * 109.72709 * 180.02562 * 5 4 2
7 7 N 1.34673 * 108.04564 * 359.93636 * 6 5 4
8 8 N 1.30974 * 125.49513 * 299.97069 * 4 2 1
9 9 C 1.46299 * 125.04370 * 180.11865 * 7 6 5
10 10 C 1.53302 * 108.77385 * 17.04765 * 9 7 6
11 11 C 1.53154 * 109.48828 * 309.85604 * 10 9 7
12 12 C 1.50931 * 127.90092 * 179.97438 * 6 5 4
13 13 H 1.08997 * 109.75677 * 76.23679 * 12 6 5
14 14 N 1.46501 * 109.71803 * 315.60633 * 12 6 5
15 15 S 1.65602 * 119.99601 * 96.25785 * 14 12 6
16 16 O 1.42101 * 104.27810 * 308.92990 * 15 14 12
17 17 O 1.42100 * 104.27444 * 181.07728 * 15 14 12
18 18 C 1.81396 * 104.45191 * 65.00176 * 15 14 12
19 19 C 1.52992 * 109.47323 * 179.97438 * 18 15 14
20 20 C 1.50700 * 109.47257 * 179.97438 * 19 18 15
21 21 H 1.07999 * 119.99988 * 359.97438 * 20 19 18
22 22 C 1.37885 * 120.00047 * 180.02562 * 20 19 18
23 23 N 1.31516 * 119.99913 * 180.02562 * 22 20 19
24 24 Si 1.86805 * 119.99854 * 359.72512 * 22 20 19
25 25 H 1.48498 * 109.46909 * 90.00086 * 24 22 20
26 26 H 1.48497 * 109.46701 * 209.99996 * 24 22 20
27 27 H 1.48500 * 109.46867 * 330.00101 * 24 22 20
28 28 H 1.08997 * 109.47144 * 300.00566 * 1 2 3
29 29 H 1.09008 * 109.46357 * 60.00155 * 1 2 3
30 30 H 1.08992 * 109.47308 * 180.02562 * 1 2 3
31 31 H 1.08997 * 109.47144 * 239.99434 * 2 1 3
32 32 H 1.09003 * 109.46864 * 299.99257 * 3 2 1
33 33 H 1.08997 * 109.47529 * 59.99670 * 3 2 1
34 34 H 1.09004 * 109.46900 * 180.02562 * 3 2 1
35 35 H 1.08998 * 109.58827 * 257.25957 * 9 7 6
36 36 H 1.09006 * 109.58320 * 136.83632 * 9 7 6
37 37 H 1.08997 * 109.46846 * 189.85124 * 10 9 7
38 38 H 1.09002 * 109.46817 * 69.86516 * 10 9 7
39 39 H 1.08999 * 109.50513 * 309.24198 * 11 10 9
40 40 H 1.09004 * 109.54445 * 189.12932 * 11 10 9
41 41 H 0.96990 * 120.00316 * 276.25926 * 14 12 6
42 42 H 1.09004 * 109.46981 * 59.99556 * 18 15 14
43 43 H 1.09005 * 109.47123 * 299.99974 * 18 15 14
44 44 H 1.09004 * 109.47330 * 59.99922 * 19 18 15
45 45 H 1.08997 * 109.47279 * 300.00409 * 19 18 15
46 46 H 0.97001 * 119.99646 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7104 1.2306
5 7 2.8024 -1.8004 1.2361
6 6 3.0530 -2.1557 2.4647
7 7 2.4378 -1.2828 3.2852
8 7 1.7834 -0.3576 2.4671
9 6 2.4765 -1.3332 4.7468
10 6 3.6372 -2.2367 5.1787
11 6 3.5584 -3.5663 4.4226
12 6 3.8789 -3.3256 2.9415
13 1 4.9389 -3.0996 2.8264
14 7 3.5407 -4.5194 2.1625
15 16 4.4674 -4.9469 0.8583
16 8 4.5497 -3.7593 0.0825
17 8 3.8367 -6.1134 0.3476
18 6 6.0857 -5.3571 1.5679
19 6 7.0424 -5.7735 0.4490
20 6 8.3870 -6.1137 1.0384
21 1 8.5436 -6.0398 2.1044
22 6 9.4176 -6.5183 0.2166
23 7 10.5909 -6.8156 0.7310
24 14 9.1449 -6.6521 -1.6266
25 1 9.4716 -5.3546 -2.2708
26 1 10.0218 -7.7146 -2.1808
27 1 7.7244 -6.9933 -1.8933
28 1 -0.3633 0.5139 0.8899
29 1 -0.3632 0.5139 -0.8901
30 1 -0.3633 -1.0276 0.0005
31 1 1.8934 -0.5139 -0.8899
32 1 1.6768 1.9562 -0.8901
33 1 1.6767 1.9564 0.8899
34 1 3.1301 1.4424 -0.0005
35 1 1.5377 -1.7392 5.1235
36 1 2.6280 -0.3291 5.1431
37 1 3.5725 -2.4239 6.2505
38 1 4.5836 -1.7456 4.9523
39 1 2.5538 -3.9788 4.5156
40 1 4.2801 -4.2675 4.8418
41 1 2.7741 -5.0593 2.4106
42 1 5.9745 -6.1791 2.2751
43 1 6.4875 -4.4853 2.0843
44 1 7.1537 -4.9519 -0.2586
45 1 6.6404 -6.6454 -0.0671
46 1 11.3160 -7.0998 0.1528
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000157135804.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:39
Heat of formation + Delta-G solvation = 1.077603 kcal
Electronic energy + Delta-G solvation = -28641.539253 eV
Core-core repulsion = 24694.691677 eV
Total energy + Delta-G solvation = -3946.847576 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.151 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.42187 -38.03324 -36.58685 -35.57808 -35.39258 -34.81873 -33.94870 -31.68515
-31.48516 -30.15932 -28.67838 -27.29576 -25.98327 -24.38035 -23.61987 -22.52538
-21.35559 -20.13602 -19.48445 -19.02706 -17.63526 -17.16218 -16.85659 -16.60129
-16.09561 -15.47055 -15.24841 -15.08875 -14.80423 -14.44986 -14.33721 -14.26815
-13.85921 -13.60164 -13.35286 -12.88948 -12.75475 -12.49434 -12.34923 -12.25113
-11.89429 -11.71623 -11.66423 -11.62693 -11.57453 -11.43835 -11.33333 -11.26491
-11.14823 -11.11567 -10.98793 -10.44688 -10.19700 -10.00985 -9.82178 -9.72050
-9.56348 -9.37374 -9.24410 -8.66098 -6.16921 -4.18123 0.66334 1.52017
2.14573 2.82676 3.07278 3.27943 3.35157 3.40026 3.69413 3.95213
4.04352 4.23678 4.29391 4.36560 4.41122 4.60586 4.69695 4.72446
4.76655 4.95466 5.00585 5.01834 5.15530 5.22649 5.26439 5.35593
5.37736 5.44646 5.48661 5.50785 5.58528 5.67749 5.69091 5.78639
5.83033 6.08923 6.10871 6.27547 6.36141 6.45988 6.67778 6.82070
6.87196 6.96600 7.54910 8.18625 8.35891 8.83668 9.43125 10.95387
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.013625 B = 0.003275 C = 0.002947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2054.617091 B = 8546.938650 C = 9498.507685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.002 4.002
3 C -0.141 4.141
4 C 0.221 3.779
5 N -0.490 5.490
6 C 0.254 3.746
7 N -0.378 5.378
8 N -0.313 5.313
9 C 0.127 3.873
10 C -0.136 4.136
11 C -0.134 4.134
12 C 0.239 3.761
13 H 0.119 0.881
14 N -1.107 6.107
15 S 2.581 3.419
16 O -0.930 6.930
17 O -0.965 6.965
18 C -0.587 4.587
19 C -0.006 4.006
20 C -0.519 4.519
21 H 0.078 0.922
22 C 0.072 3.928
23 N -0.896 5.896
24 Si 0.868 3.132
25 H -0.271 1.271
26 H -0.282 1.282
27 H -0.261 1.261
28 H 0.059 0.941
29 H 0.065 0.935
30 H 0.055 0.945
31 H 0.100 0.900
32 H 0.065 0.935
33 H 0.059 0.941
34 H 0.057 0.943
35 H 0.087 0.913
36 H 0.095 0.905
37 H 0.103 0.897
38 H 0.084 0.916
39 H 0.082 0.918
40 H 0.101 0.899
41 H 0.415 0.585
42 H 0.126 0.874
43 H 0.122 0.878
44 H 0.029 0.971
45 H 0.032 0.968
46 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.028 12.465 9.840 24.785
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.023 4.023
3 C -0.199 4.199
4 C -0.061 4.061
5 N -0.215 5.215
6 C -0.025 4.025
7 N -0.171 5.171
8 N -0.141 5.141
9 C 0.005 3.995
10 C -0.176 4.176
11 C -0.173 4.173
12 C 0.127 3.873
13 H 0.136 0.864
14 N -0.862 5.862
15 S 2.678 3.322
16 O -0.919 6.919
17 O -0.956 6.956
18 C -0.720 4.720
19 C -0.046 4.046
20 C -0.558 4.558
21 H 0.096 0.904
22 C -0.131 4.131
23 N -0.534 5.534
24 Si 0.695 3.305
25 H -0.196 1.196
26 H -0.208 1.208
27 H -0.185 1.185
28 H 0.078 0.922
29 H 0.084 0.916
30 H 0.074 0.926
31 H 0.118 0.882
32 H 0.084 0.916
33 H 0.078 0.922
34 H 0.076 0.924
35 H 0.105 0.895
36 H 0.114 0.886
37 H 0.121 0.879
38 H 0.102 0.898
39 H 0.100 0.900
40 H 0.119 0.881
41 H 0.249 0.751
42 H 0.144 0.856
43 H 0.140 0.860
44 H 0.048 0.952
45 H 0.051 0.949
46 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -19.345 12.957 8.828 24.901
hybrid contribution 0.185 -0.505 0.070 0.543
sum -19.160 12.451 8.898 24.522
Atomic orbital electron populations
1.21806 0.93550 1.02186 1.02330 1.19521 0.95786 0.95190 0.91849
1.21803 1.01514 0.94303 1.02277 1.24374 0.95567 0.92810 0.93340
1.70448 1.17714 1.13757 1.19614 1.24826 0.96816 0.94574 0.86308
1.50355 1.38179 1.21099 1.07439 1.77817 1.20433 1.13718 1.02095
1.21864 1.00445 1.02405 0.74818 1.22006 0.98546 0.95052 1.01951
1.22098 1.04620 0.98354 0.92268 1.19223 0.97400 0.79741 0.90926
0.86371 1.55897 1.44790 1.34428 1.51054 1.06062 0.77314 0.74644
0.74212 1.93664 1.86325 1.46239 1.65696 1.93564 1.74406 1.50854
1.76747 1.30365 1.18474 1.11009 1.12135 1.19394 0.95741 0.97211
0.92226 1.20847 0.92661 1.46320 0.96002 0.90436 1.24983 0.94933
0.94308 0.98865 1.69880 1.02365 1.45336 1.35843 0.86934 0.79210
0.78661 0.85736 1.19623 1.20773 1.18543 0.92153 0.91607 0.92590
0.88203 0.91636 0.92164 0.92353 0.89521 0.88632 0.87863 0.89765
0.89985 0.88086 0.75144 0.85552 0.85977 0.95243 0.94942 0.92384
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16
2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16
3 C -0.14 -1.42 9.18 37.16 0.34 -1.08 16
4 C 0.22 3.30 6.65 -156.43 -1.04 2.26 16
5 N -0.49 -8.23 10.21 -8.03 -0.08 -8.32 16
6 C 0.25 3.48 7.31 -155.78 -1.14 2.34 16
7 N -0.38 -4.52 4.04 -58.29 -0.24 -4.75 16
8 N -0.31 -4.37 12.74 32.50 0.41 -3.95 16
9 C 0.13 0.87 7.30 -3.99 -0.03 0.84 16
10 C -0.14 -0.67 5.95 -26.50 -0.16 -0.83 16
11 C -0.13 -0.84 5.51 -26.42 -0.15 -0.99 16
12 C 0.24 2.57 2.95 -68.74 -0.20 2.37 16
13 H 0.12 1.19 7.18 -51.93 -0.37 0.82 16
14 N -1.11 -13.41 5.37 -5.59 -0.03 -13.44 16
15 S 2.58 43.64 5.38 -107.50 -0.58 43.06 16
16 O -0.93 -18.63 16.84 -57.54 -0.97 -19.60 16
17 O -0.97 -19.11 18.08 -57.54 -1.04 -20.15 16
18 C -0.59 -10.27 5.90 37.15 0.22 -10.05 16
19 C -0.01 -0.15 4.05 -27.89 -0.11 -0.26 16
20 C -0.52 -14.28 9.66 -34.44 -0.33 -14.61 16
21 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16
22 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16
23 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16
24 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16
25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
27 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16
28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
29 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16
30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16
32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16
36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16
38 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16
39 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16
40 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16
41 H 0.42 4.11 8.80 -34.47 -0.30 3.81 16
42 H 0.13 1.96 8.14 -51.92 -0.42 1.54 16
43 H 0.12 1.87 7.46 -51.92 -0.39 1.48 16
44 H 0.03 0.68 7.58 -51.93 -0.39 0.29 16
45 H 0.03 0.77 7.19 -51.93 -0.37 0.39 16
46 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16
LS Contribution 385.77 15.07 5.81 5.81
Total: -1.00 -38.80 385.77 -10.60 -49.41
By element:
Atomic # 1 Polarization: 7.99 SS G_CDS: -7.33 Total: 0.66 kcal
Atomic # 6 Polarization: -16.77 SS G_CDS: -2.67 Total: -19.44 kcal
Atomic # 7 Polarization: -57.39 SS G_CDS: 0.84 Total: -56.55 kcal
Atomic # 8 Polarization: -37.73 SS G_CDS: -2.01 Total: -39.74 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal
Atomic # 16 Polarization: 43.64 SS G_CDS: -0.58 Total: 43.06 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -38.80 -10.60 -49.41 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000157135804.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.487 kcal
(2) G-P(sol) polarization free energy of solvation -38.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.682 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.409 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.078 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds