Wall clock time and date at job start Sat Apr 11 2020 06:34:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52998 * 109.47210 * 2 1
4 4 C 1.50704 * 109.46585 * 119.99799 * 2 1 3
5 5 N 1.33466 * 125.49959 * 119.97716 * 4 2 1
6 6 C 1.30325 * 109.72709 * 180.02562 * 5 4 2
7 7 N 1.34673 * 108.04564 * 359.93636 * 6 5 4
8 8 N 1.30974 * 125.49513 * 299.97069 * 4 2 1
9 9 C 1.46299 * 125.04370 * 180.11865 * 7 6 5
10 10 C 1.53302 * 108.77385 * 17.04765 * 9 7 6
11 11 C 1.53154 * 109.48828 * 309.85604 * 10 9 7
12 12 C 1.50931 * 127.90092 * 179.97438 * 6 5 4
13 13 H 1.08997 * 109.75677 * 76.23679 * 12 6 5
14 14 N 1.46501 * 109.71803 * 315.60633 * 12 6 5
15 15 S 1.65602 * 119.99601 * 96.25785 * 14 12 6
16 16 O 1.42101 * 104.27810 * 308.92990 * 15 14 12
17 17 O 1.42100 * 104.27444 * 181.07728 * 15 14 12
18 18 C 1.81396 * 104.45191 * 65.00176 * 15 14 12
19 19 C 1.52992 * 109.47323 * 179.97438 * 18 15 14
20 20 C 1.50700 * 109.47257 * 179.97438 * 19 18 15
21 21 H 1.07999 * 119.99988 * 359.97438 * 20 19 18
22 22 C 1.37885 * 120.00047 * 180.02562 * 20 19 18
23 23 N 1.31516 * 119.99913 * 180.02562 * 22 20 19
24 24 Si 1.86805 * 119.99854 * 359.72512 * 22 20 19
25 25 H 1.48498 * 109.46909 * 90.00086 * 24 22 20
26 26 H 1.48497 * 109.46701 * 209.99996 * 24 22 20
27 27 H 1.48500 * 109.46867 * 330.00101 * 24 22 20
28 28 H 1.08997 * 109.47144 * 300.00566 * 1 2 3
29 29 H 1.09008 * 109.46357 * 60.00155 * 1 2 3
30 30 H 1.08992 * 109.47308 * 180.02562 * 1 2 3
31 31 H 1.08997 * 109.47144 * 239.99434 * 2 1 3
32 32 H 1.09003 * 109.46864 * 299.99257 * 3 2 1
33 33 H 1.08997 * 109.47529 * 59.99670 * 3 2 1
34 34 H 1.09004 * 109.46900 * 180.02562 * 3 2 1
35 35 H 1.08998 * 109.58827 * 257.25957 * 9 7 6
36 36 H 1.09006 * 109.58320 * 136.83632 * 9 7 6
37 37 H 1.08997 * 109.46846 * 189.85124 * 10 9 7
38 38 H 1.09002 * 109.46817 * 69.86516 * 10 9 7
39 39 H 1.08999 * 109.50513 * 309.24198 * 11 10 9
40 40 H 1.09004 * 109.54445 * 189.12932 * 11 10 9
41 41 H 0.96990 * 120.00316 * 276.25926 * 14 12 6
42 42 H 1.09004 * 109.46981 * 59.99556 * 18 15 14
43 43 H 1.09005 * 109.47123 * 299.99974 * 18 15 14
44 44 H 1.09004 * 109.47330 * 59.99922 * 19 18 15
45 45 H 1.08997 * 109.47279 * 300.00409 * 19 18 15
46 46 H 0.97001 * 119.99646 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7104 1.2306
5 7 2.8024 -1.8004 1.2361
6 6 3.0530 -2.1557 2.4647
7 7 2.4378 -1.2828 3.2852
8 7 1.7834 -0.3576 2.4671
9 6 2.4765 -1.3332 4.7468
10 6 3.6372 -2.2367 5.1787
11 6 3.5584 -3.5663 4.4226
12 6 3.8789 -3.3256 2.9415
13 1 4.9389 -3.0996 2.8264
14 7 3.5407 -4.5194 2.1625
15 16 4.4674 -4.9469 0.8583
16 8 4.5497 -3.7593 0.0825
17 8 3.8367 -6.1134 0.3476
18 6 6.0857 -5.3571 1.5679
19 6 7.0424 -5.7735 0.4490
20 6 8.3870 -6.1137 1.0384
21 1 8.5436 -6.0398 2.1044
22 6 9.4176 -6.5183 0.2166
23 7 10.5909 -6.8156 0.7310
24 14 9.1449 -6.6521 -1.6266
25 1 9.4716 -5.3546 -2.2708
26 1 10.0218 -7.7146 -2.1808
27 1 7.7244 -6.9933 -1.8933
28 1 -0.3633 0.5139 0.8899
29 1 -0.3632 0.5139 -0.8901
30 1 -0.3633 -1.0276 0.0005
31 1 1.8934 -0.5139 -0.8899
32 1 1.6768 1.9562 -0.8901
33 1 1.6767 1.9564 0.8899
34 1 3.1301 1.4424 -0.0005
35 1 1.5377 -1.7392 5.1235
36 1 2.6280 -0.3291 5.1431
37 1 3.5725 -2.4239 6.2505
38 1 4.5836 -1.7456 4.9523
39 1 2.5538 -3.9788 4.5156
40 1 4.2801 -4.2675 4.8418
41 1 2.7741 -5.0593 2.4106
42 1 5.9745 -6.1791 2.2751
43 1 6.4875 -4.4853 2.0843
44 1 7.1537 -4.9519 -0.2586
45 1 6.6404 -6.6454 -0.0671
46 1 11.3160 -7.0998 0.1528
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000157135804.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:38
Heat of formation + Delta-G solvation = -28.301573 kcal
Electronic energy + Delta-G solvation = -28642.813230 eV
Core-core repulsion = 24694.691677 eV
Total energy + Delta-G solvation = -3948.121552 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.151 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-43.36567 -38.79988 -38.03674 -36.90683 -36.42187 -35.86974 -35.62101 -33.44788
-32.62890 -30.99006 -29.45957 -28.08968 -27.86535 -25.14490 -24.41810 -23.32272
-23.17429 -20.98456 -20.40629 -20.25376 -19.37073 -18.40725 -18.03241 -17.48881
-17.15353 -16.84132 -16.38936 -16.26709 -15.96706 -15.87154 -15.20837 -15.13430
-15.03952 -14.80370 -14.53690 -14.13660 -13.79762 -13.56326 -13.37162 -13.25197
-13.11179 -13.05701 -12.99098 -12.93364 -12.86764 -12.45892 -12.44119 -12.24307
-12.19636 -12.10493 -11.95299 -11.91609 -11.78431 -11.68063 -11.32545 -10.87749
-10.82451 -10.76327 -10.65666 -10.26028 -8.34949 -6.39540 -0.69951 0.54461
1.32707 1.35281 1.36398 1.44783 1.72299 1.98351 2.30906 2.78479
2.88742 2.99581 3.27605 3.35804 3.51181 3.66542 3.76923 3.79805
3.93578 3.95493 4.15923 4.17183 4.26937 4.30658 4.39422 4.42720
4.61284 4.67565 4.75251 4.79516 4.85070 4.89347 4.92271 5.03100
5.04906 5.10333 5.13563 5.24121 5.25386 5.28258 5.42441 5.49546
5.51439 5.83709 6.01331 6.18981 6.66633 7.19447 7.24895 8.80284
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.013625 B = 0.003275 C = 0.002947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2054.617091 B = 8546.938650 C = 9498.507685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.009 4.009
3 C -0.132 4.132
4 C 0.203 3.797
5 N -0.542 5.542
6 C 0.243 3.757
7 N -0.371 5.371
8 N -0.325 5.325
9 C 0.113 3.887
10 C -0.129 4.129
11 C -0.128 4.128
12 C 0.228 3.772
13 H 0.123 0.877
14 N -1.090 6.090
15 S 2.608 3.392
16 O -0.964 6.964
17 O -0.996 6.996
18 C -0.586 4.586
19 C -0.018 4.018
20 C -0.523 4.523
21 H 0.056 0.944
22 C 0.016 3.984
23 N -0.939 5.939
24 Si 0.919 3.081
25 H -0.263 1.263
26 H -0.274 1.274
27 H -0.251 1.251
28 H 0.059 0.941
29 H 0.089 0.911
30 H 0.043 0.957
31 H 0.085 0.915
32 H 0.089 0.911
33 H 0.060 0.940
34 H 0.042 0.958
35 H 0.105 0.895
36 H 0.106 0.894
37 H 0.141 0.859
38 H 0.080 0.920
39 H 0.093 0.907
40 H 0.124 0.876
41 H 0.427 0.573
42 H 0.148 0.852
43 H 0.144 0.856
44 H 0.028 0.972
45 H 0.029 0.971
46 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.495 12.962 11.325 26.764
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.030 4.030
3 C -0.190 4.190
4 C -0.079 4.079
5 N -0.269 5.269
6 C -0.036 4.036
7 N -0.164 5.164
8 N -0.154 5.154
9 C -0.007 4.007
10 C -0.168 4.168
11 C -0.168 4.168
12 C 0.116 3.884
13 H 0.141 0.859
14 N -0.849 5.849
15 S 2.704 3.296
16 O -0.953 6.953
17 O -0.987 6.987
18 C -0.717 4.717
19 C -0.057 4.057
20 C -0.562 4.562
21 H 0.074 0.926
22 C -0.183 4.183
23 N -0.579 5.579
24 Si 0.742 3.258
25 H -0.188 1.188
26 H -0.199 1.199
27 H -0.175 1.175
28 H 0.079 0.921
29 H 0.107 0.893
30 H 0.062 0.938
31 H 0.104 0.896
32 H 0.107 0.893
33 H 0.079 0.921
34 H 0.061 0.939
35 H 0.123 0.877
36 H 0.124 0.876
37 H 0.159 0.841
38 H 0.099 0.901
39 H 0.112 0.888
40 H 0.143 0.857
41 H 0.264 0.736
42 H 0.166 0.834
43 H 0.162 0.838
44 H 0.047 0.953
45 H 0.048 0.952
46 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -20.826 13.449 10.341 26.862
hybrid contribution 0.611 -0.610 -0.237 0.895
sum -20.216 12.839 10.104 25.993
Atomic orbital electron populations
1.21737 0.91956 1.01740 1.03449 1.19671 0.97116 0.95748 0.90464
1.21740 1.00425 0.93390 1.03432 1.24835 0.95787 0.92889 0.94401
1.70398 1.19381 1.15214 1.21894 1.25262 0.96940 0.95388 0.86038
1.50682 1.36765 1.19930 1.08983 1.77715 1.21041 1.14615 1.02060
1.22392 1.02446 1.03913 0.71943 1.22075 0.97345 0.93577 1.03766
1.22186 1.06051 0.99753 0.88761 1.19755 0.97306 0.77972 0.93334
0.85936 1.55341 1.44374 1.35016 1.50172 1.04983 0.76927 0.73336
0.74363 1.93630 1.86779 1.47420 1.67472 1.93516 1.74939 1.52135
1.78081 1.30291 1.17792 1.12812 1.10842 1.19360 0.95083 0.97163
0.94083 1.21182 0.94536 1.45218 0.95242 0.92590 1.25808 0.94817
0.94387 1.03299 1.69995 1.03363 1.47024 1.37499 0.86111 0.79733
0.79186 0.80741 1.18767 1.19934 1.17505 0.92144 0.89260 0.93772
0.89622 0.89260 0.92119 0.93915 0.87672 0.87581 0.84068 0.90097
0.88799 0.85729 0.73593 0.83377 0.83811 0.95332 0.95231 0.92178
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.51 9.18 71.98 0.66 -1.85 16
2 C -0.01 -0.22 3.39 -11.54 -0.04 -0.25 16
3 C -0.13 -2.63 9.18 71.98 0.66 -1.97 16
4 C 0.20 6.13 6.65 138.49 0.92 7.06 16
5 N -0.54 -18.44 10.21 -179.31 -1.83 -20.27 16
6 C 0.24 6.45 7.31 138.37 1.01 7.46 16
7 N -0.37 -8.36 4.04 -338.34 -1.37 -9.72 16
8 N -0.33 -8.97 12.74 -51.08 -0.65 -9.62 16
9 C 0.11 1.23 7.30 86.52 0.63 1.86 16
10 C -0.13 -0.75 5.95 30.75 0.18 -0.57 16
11 C -0.13 -1.12 5.51 30.79 0.17 -0.95 16
12 C 0.23 4.43 2.95 44.47 0.13 4.56 16
13 H 0.12 2.25 7.18 -2.39 -0.02 2.23 16
14 N -1.09 -24.55 5.37 -171.59 -0.92 -25.47 16
15 S 2.61 85.94 5.38 -56.49 -0.30 85.63 16
16 O -0.96 -38.72 16.84 -127.65 -2.15 -40.87 16
17 O -1.00 -38.79 18.08 -127.65 -2.31 -41.09 16
18 C -0.59 -19.64 5.90 71.98 0.42 -19.21 16
19 C -0.02 -0.82 4.05 29.85 0.12 -0.70 16
20 C -0.52 -28.81 9.66 25.60 0.25 -28.57 16
21 H 0.06 3.24 7.99 -2.91 -0.02 3.21 16
22 C 0.02 0.89 5.47 84.66 0.46 1.35 16
23 N -0.94 -57.01 13.96 21.45 0.30 -56.71 16
24 Si 0.92 43.91 27.47 68.60 1.88 45.80 16
25 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16
26 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16
27 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16
28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
29 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16
30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16
32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
34 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16
35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16
36 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16
37 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16
38 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16
39 H 0.09 0.65 8.11 -2.39 -0.02 0.63 16
40 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16
41 H 0.43 7.59 8.80 -96.76 -0.85 6.74 16
42 H 0.15 4.28 8.14 -2.39 -0.02 4.26 16
43 H 0.14 4.14 7.46 -2.39 -0.02 4.13 16
44 H 0.03 1.31 7.58 -2.38 -0.02 1.29 16
45 H 0.03 1.37 7.19 -2.39 -0.02 1.35 16
46 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16
Total: -1.00 -86.70 385.77 -1.68 -88.38
By element:
Atomic # 1 Polarization: 15.66 SS G_CDS: 0.08 Total: 15.74 kcal
Atomic # 6 Polarization: -37.38 SS G_CDS: 5.59 Total: -31.79 kcal
Atomic # 7 Polarization: -117.33 SS G_CDS: -4.47 Total: -121.80 kcal
Atomic # 8 Polarization: -77.51 SS G_CDS: -4.46 Total: -81.96 kcal
Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal
Atomic # 16 Polarization: 85.94 SS G_CDS: -0.30 Total: 85.63 kcal
Total: -86.70 -1.68 -88.38 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000157135804.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.083 kcal
(2) G-P(sol) polarization free energy of solvation -86.703 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.620 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.681 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.385 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.302 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds