Wall clock time and date at job start Sat Apr 11 2020 06:34:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.33465 * 125.49595 * 2 1
4 4 C 1.30328 * 109.72804 * 180.02562 * 3 2 1
5 5 N 1.34678 * 108.03921 * 359.92146 * 4 3 2
6 6 N 1.30966 * 125.49644 * 180.02562 * 2 1 3
7 7 C 1.46298 * 125.04762 * 180.13887 * 5 4 3
8 8 C 1.53309 * 108.77160 * 17.02487 * 7 5 4
9 9 H 1.08999 * 109.46676 * 69.85616 * 8 7 5
10 10 N 1.46493 * 109.46878 * 189.85235 * 8 7 5
11 11 C 1.34783 * 120.00345 * 275.00337 * 10 8 7
12 12 O 1.21592 * 119.99551 * 359.97438 * 11 10 8
13 13 C 1.47535 * 119.99976 * 180.02562 * 11 10 8
14 14 C 1.39666 * 120.19934 * 359.97438 * 13 11 10
15 15 C 1.37828 * 119.91659 * 179.97438 * 14 13 11
16 16 C 1.38570 * 120.32376 * 359.97438 * 15 14 13
17 17 C 1.38020 * 120.40572 * 0.02779 * 16 15 14
18 18 C 1.38838 * 120.06769 * 359.73783 * 17 16 15
19 19 O 1.35526 * 120.16002 * 180.27624 * 18 17 16
20 20 C 1.34815 * 116.99899 * 354.40060 * 19 18 17
21 21 H 1.08005 * 120.00012 * 5.06487 * 20 19 18
22 22 C 1.38694 * 120.00104 * 185.06277 * 20 19 18
23 23 N 1.31528 * 120.00052 * 0.02562 * 22 20 19
24 24 Si 1.86804 * 120.00353 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.46800 * 89.99844 * 24 22 20
26 26 H 1.48494 * 109.47143 * 209.99959 * 24 22 20
27 27 H 1.48495 * 109.46885 * 330.00129 * 24 22 20
28 28 C 1.53135 * 109.49405 * 309.86922 * 8 7 5
29 29 C 1.50932 * 127.91146 * 179.97438 * 4 3 2
30 30 H 1.09001 * 109.47183 * 90.01733 * 1 2 3
31 31 H 1.09001 * 109.46954 * 210.01905 * 1 2 3
32 32 H 1.08997 * 109.46837 * 330.02069 * 1 2 3
33 33 H 1.08994 * 109.59071 * 136.81547 * 7 5 4
34 34 H 1.09006 * 109.58964 * 257.10016 * 7 5 4
35 35 H 0.96998 * 120.00036 * 95.00419 * 10 8 7
36 36 H 1.07999 * 120.03526 * 359.96070 * 14 13 11
37 37 H 1.07998 * 119.83052 * 180.02562 * 15 14 13
38 38 H 1.07998 * 119.79359 * 179.97438 * 16 15 14
39 39 H 1.07994 * 119.96629 * 180.02562 * 17 16 15
40 40 H 0.96993 * 119.99841 * 180.02562 * 23 22 20
41 41 H 1.08996 * 109.49414 * 309.22993 * 28 8 7
42 42 H 1.08999 * 109.50801 * 189.10152 * 28 8 7
43 43 H 1.08999 * 109.71355 * 315.59305 * 29 4 3
44 44 H 1.08993 * 109.71564 * 76.23344 * 29 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2820 1.0866 0.0000
4 6 3.5362 0.7325 -0.0005
5 7 3.5896 -0.6133 0.0008
6 7 2.2675 -1.0663 -0.0005
7 6 4.8197 -1.4053 0.0037
8 6 5.9851 -0.5050 0.4298
9 1 5.8840 -0.2553 1.4859
10 7 7.2510 -1.2100 0.2137
11 6 7.7242 -2.0495 1.1560
12 8 7.1006 -2.2213 2.1856
13 6 8.9994 -2.7590 0.9386
14 6 9.7192 -2.5643 -0.2423
15 6 10.9101 -3.2297 -0.4391
16 6 11.3982 -4.0918 0.5298
17 6 10.6978 -4.2941 1.7017
18 6 9.4989 -3.6286 1.9193
19 8 8.8123 -3.8217 3.0717
20 6 9.2861 -4.7594 3.9166
21 1 10.2189 -5.2591 3.7007
22 6 8.5756 -5.0823 5.0632
23 7 7.4394 -4.4741 5.3259
24 14 9.2324 -6.3810 6.2343
25 1 10.0996 -5.7360 7.2527
26 1 8.0965 -7.0589 6.9090
27 1 10.0232 -7.3804 5.4720
28 6 5.9683 0.7807 -0.4021
29 6 4.7523 1.6264 -0.0013
30 1 -0.3633 -0.0003 -1.0277
31 1 -0.3633 -0.8898 0.5141
32 1 -0.3633 0.8902 0.5135
33 1 4.7204 -2.2320 0.7070
34 1 5.0045 -1.7968 -0.9967
35 1 7.7486 -1.0726 -0.6075
36 1 9.3430 -1.8932 -1.0003
37 1 11.4658 -3.0778 -1.3526
38 1 12.3321 -4.6091 0.3665
39 1 11.0850 -4.9673 2.4522
40 1 6.9428 -4.6997 6.1280
41 1 5.9041 0.5283 -1.4604
42 1 6.8816 1.3460 -0.2167
43 1 4.6140 2.4347 -0.7194
44 1 4.9045 2.0411 0.9951
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000171343153.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:50
Heat of formation + Delta-G solvation = 54.807212 kcal
Electronic energy + Delta-G solvation = -29149.615794 eV
Core-core repulsion = 25069.654157 eV
Total energy + Delta-G solvation = -4079.961636 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.37188 -39.85903 -38.62013 -36.90400 -36.40526 -33.70665 -33.30984 -32.41334
-31.53412 -30.45691 -29.32944 -29.01005 -27.58516 -25.45849 -24.42772 -23.46948
-22.39430 -21.42338 -20.71493 -20.09024 -19.66950 -18.12916 -17.64543 -16.88787
-16.40753 -16.21260 -15.63692 -15.22088 -14.74731 -14.48132 -14.43007 -14.36565
-14.14776 -14.07806 -13.87343 -13.46904 -13.42240 -13.05711 -12.84119 -12.68274
-12.59039 -12.52241 -12.07278 -11.85656 -11.78051 -11.43748 -11.33639 -11.19496
-11.18370 -10.96563 -10.86061 -10.51120 -10.04756 -9.70429 -9.68125 -9.31167
-9.05586 -8.94643 -8.92488 -8.38012 -7.40362 -6.51570 -4.11689 1.58562
1.60736 2.19191 2.23332 2.82600 3.07591 3.08864 3.13763 3.35852
3.55237 3.77765 3.87783 4.20491 4.34349 4.53193 4.56512 4.68350
4.81242 4.98332 5.01678 5.09053 5.10466 5.27493 5.36208 5.40951
5.42384 5.43474 5.48535 5.62256 5.65108 5.65998 5.78708 5.83053
5.99636 6.02774 6.32696 6.43543 6.46644 6.54859 6.61396 6.79444
6.82084 6.97275 7.14924 7.21444 7.60338 7.80263 7.90980 8.10666
8.85387 8.89769 9.58408 10.61893
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.011422 B = 0.003016 C = 0.002497
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2450.714306 B = 9282.336033 C =11212.788168
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 C 0.210 3.790
3 N -0.541 5.541
4 C 0.273 3.727
5 N -0.365 5.365
6 N -0.312 5.312
7 C 0.114 3.886
8 C 0.140 3.860
9 H 0.102 0.898
10 N -0.735 5.735
11 C 0.556 3.444
12 O -0.495 6.495
13 C -0.230 4.230
14 C -0.037 4.037
15 C -0.231 4.231
16 C -0.049 4.049
17 C -0.236 4.236
18 C 0.189 3.811
19 O -0.123 6.123
20 C -0.404 4.404
21 H 0.095 0.905
22 C 0.045 3.955
23 N -0.831 5.831
24 Si 0.941 3.059
25 H -0.271 1.271
26 H -0.276 1.276
27 H -0.266 1.266
28 C -0.135 4.135
29 C -0.035 4.035
30 H 0.080 0.920
31 H 0.080 0.920
32 H 0.084 0.916
33 H 0.105 0.895
34 H 0.089 0.911
35 H 0.398 0.602
36 H 0.112 0.888
37 H 0.110 0.890
38 H 0.111 0.889
39 H 0.132 0.868
40 H 0.272 0.728
41 H 0.078 0.922
42 H 0.097 0.903
43 H 0.108 0.892
44 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.156 9.560 -13.337 16.551
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.071 4.071
3 N -0.270 5.270
4 C -0.003 4.003
5 N -0.156 5.156
6 N -0.141 5.141
7 C -0.009 4.009
8 C 0.033 3.967
9 H 0.120 0.880
10 N -0.391 5.391
11 C 0.346 3.654
12 O -0.368 6.368
13 C -0.235 4.235
14 C -0.056 4.056
15 C -0.250 4.250
16 C -0.068 4.068
17 C -0.256 4.256
18 C 0.129 3.871
19 O -0.020 6.020
20 C -0.480 4.480
21 H 0.112 0.888
22 C -0.163 4.163
23 N -0.462 5.462
24 Si 0.765 3.235
25 H -0.197 1.197
26 H -0.201 1.201
27 H -0.190 1.190
28 C -0.173 4.173
29 C -0.075 4.075
30 H 0.099 0.901
31 H 0.099 0.901
32 H 0.103 0.897
33 H 0.124 0.876
34 H 0.107 0.893
35 H 0.233 0.767
36 H 0.130 0.870
37 H 0.128 0.872
38 H 0.129 0.871
39 H 0.150 0.850
40 H 0.082 0.918
41 H 0.097 0.903
42 H 0.116 0.884
43 H 0.126 0.874
44 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -3.369 9.017 -12.206 15.545
hybrid contribution 0.950 -0.793 0.099 1.241
sum -2.419 8.224 -12.106 14.834
Atomic orbital electron populations
1.20048 0.83995 1.03946 1.03437 1.24396 0.98211 0.85590 0.98949
1.70132 0.99808 1.30911 1.26105 1.24269 0.95034 0.84100 0.96943
1.50113 1.05700 1.05788 1.54015 1.77970 0.86664 1.22599 1.26818
1.22438 0.78940 0.95402 1.04144 1.20960 0.83273 0.90379 1.02121
0.87960 1.45831 1.22550 1.48193 1.22571 1.18351 0.85459 0.78656
0.82948 1.90980 1.58516 1.61518 1.25749 1.18719 0.98599 1.09002
0.97199 1.20744 0.94016 0.96575 0.94237 1.20466 0.99053 1.04628
1.00837 1.20914 0.97699 0.95329 0.92834 1.21170 0.97473 1.06760
1.00161 1.19265 0.90143 0.91504 0.86207 1.84160 1.46271 1.49271
1.22336 1.21507 1.07622 1.16598 1.02237 0.88792 1.25398 0.95321
0.98206 0.97364 1.70120 1.12475 1.38402 1.25191 0.85720 0.78553
0.79541 0.79680 1.19684 1.20077 1.19017 1.22042 0.99158 0.95573
1.00566 1.20314 0.86405 0.95696 1.05120 0.90103 0.90079 0.89694
0.87624 0.89274 0.76688 0.87019 0.87211 0.87125 0.85027 0.91764
0.90341 0.88412 0.87414 0.87794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -0.55 10.51 36.01 0.38 -0.17 16
2 C 0.21 3.08 8.15 -156.44 -1.27 1.81 16
3 N -0.54 -8.01 11.18 -8.03 -0.09 -8.10 16
4 C 0.27 3.67 7.72 -155.78 -1.20 2.47 16
5 N -0.37 -5.50 4.04 -58.29 -0.24 -5.74 16
6 N -0.31 -5.15 12.74 32.50 0.41 -4.74 16
7 C 0.11 1.60 6.87 -3.99 -0.03 1.57 16
8 C 0.14 1.75 2.47 -67.70 -0.17 1.59 16
9 H 0.10 1.57 7.55 -51.93 -0.39 1.17 16
10 N -0.74 -9.95 5.03 -54.63 -0.27 -10.22 16
11 C 0.56 11.04 7.73 -12.47 -0.10 10.94 16
12 O -0.49 -12.61 14.83 -16.57 -0.25 -12.86 16
13 C -0.23 -4.62 5.89 -104.81 -0.62 -5.24 16
14 C -0.04 -0.57 9.54 -39.20 -0.37 -0.94 16
15 C -0.23 -3.49 10.02 -39.61 -0.40 -3.89 16
16 C -0.05 -0.82 10.03 -39.54 -0.40 -1.21 16
17 C -0.24 -4.85 9.16 -39.44 -0.36 -5.21 16
18 C 0.19 4.47 6.66 -38.60 -0.26 4.21 16
19 O -0.12 -3.49 7.84 -21.08 -0.17 -3.66 16
20 C -0.40 -11.14 9.49 30.90 0.29 -10.85 16
21 H 0.09 2.34 5.21 -52.48 -0.27 2.07 16
22 C 0.05 1.24 5.49 -17.51 -0.10 1.14 16
23 N -0.83 -24.67 13.67 55.48 0.76 -23.91 16
24 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16
25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16
26 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16
27 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16
28 C -0.13 -1.09 5.43 -26.43 -0.14 -1.24 16
29 C -0.04 -0.31 6.33 -27.54 -0.17 -0.48 16
30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16
31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16
33 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16
34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16
35 H 0.40 3.99 6.63 -40.82 -0.27 3.71 16
36 H 0.11 1.24 6.40 -52.49 -0.34 0.91 16
37 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16
38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16
39 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16
40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16
41 H 0.08 0.54 8.12 -51.93 -0.42 0.11 16
42 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16
43 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16
44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16
LS Contribution 370.81 15.07 5.59 5.59
Total: -1.00 -36.87 370.81 -9.54 -46.41
By element:
Atomic # 1 Polarization: 12.91 SS G_CDS: -5.35 Total: 7.55 kcal
Atomic # 6 Polarization: -0.59 SS G_CDS: -4.91 Total: -5.50 kcal
Atomic # 7 Polarization: -53.27 SS G_CDS: 0.57 Total: -52.70 kcal
Atomic # 8 Polarization: -16.11 SS G_CDS: -0.41 Total: -16.52 kcal
Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -36.87 -9.54 -46.41 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171343153.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.221 kcal
(2) G-P(sol) polarization free energy of solvation -36.874 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.347 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds