Wall clock time and date at job start Sat Apr 11 2020 06:34:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.33465 * 125.49595 * 2 1
4 4 C 1.30328 * 109.72804 * 180.02562 * 3 2 1
5 5 N 1.34678 * 108.03921 * 359.92146 * 4 3 2
6 6 N 1.30966 * 125.49644 * 180.02562 * 2 1 3
7 7 C 1.46298 * 125.04762 * 180.13887 * 5 4 3
8 8 C 1.53309 * 108.77160 * 17.02487 * 7 5 4
9 9 H 1.08999 * 109.46676 * 69.85616 * 8 7 5
10 10 N 1.46493 * 109.46878 * 189.85235 * 8 7 5
11 11 C 1.34783 * 120.00345 * 275.00337 * 10 8 7
12 12 O 1.21592 * 119.99551 * 359.97438 * 11 10 8
13 13 C 1.47535 * 119.99976 * 180.02562 * 11 10 8
14 14 C 1.39666 * 120.19934 * 359.97438 * 13 11 10
15 15 C 1.37828 * 119.91659 * 179.97438 * 14 13 11
16 16 C 1.38570 * 120.32376 * 359.97438 * 15 14 13
17 17 C 1.38020 * 120.40572 * 0.02779 * 16 15 14
18 18 C 1.38838 * 120.06769 * 359.73783 * 17 16 15
19 19 O 1.35526 * 120.16002 * 180.27624 * 18 17 16
20 20 C 1.34815 * 116.99899 * 354.40060 * 19 18 17
21 21 H 1.08005 * 120.00012 * 5.06487 * 20 19 18
22 22 C 1.38694 * 120.00104 * 185.06277 * 20 19 18
23 23 N 1.31528 * 120.00052 * 0.02562 * 22 20 19
24 24 Si 1.86804 * 120.00353 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.46800 * 89.99844 * 24 22 20
26 26 H 1.48494 * 109.47143 * 209.99959 * 24 22 20
27 27 H 1.48495 * 109.46885 * 330.00129 * 24 22 20
28 28 C 1.53135 * 109.49405 * 309.86922 * 8 7 5
29 29 C 1.50932 * 127.91146 * 179.97438 * 4 3 2
30 30 H 1.09001 * 109.47183 * 90.01733 * 1 2 3
31 31 H 1.09001 * 109.46954 * 210.01905 * 1 2 3
32 32 H 1.08997 * 109.46837 * 330.02069 * 1 2 3
33 33 H 1.08994 * 109.59071 * 136.81547 * 7 5 4
34 34 H 1.09006 * 109.58964 * 257.10016 * 7 5 4
35 35 H 0.96998 * 120.00036 * 95.00419 * 10 8 7
36 36 H 1.07999 * 120.03526 * 359.96070 * 14 13 11
37 37 H 1.07998 * 119.83052 * 180.02562 * 15 14 13
38 38 H 1.07998 * 119.79359 * 179.97438 * 16 15 14
39 39 H 1.07994 * 119.96629 * 180.02562 * 17 16 15
40 40 H 0.96993 * 119.99841 * 180.02562 * 23 22 20
41 41 H 1.08996 * 109.49414 * 309.22993 * 28 8 7
42 42 H 1.08999 * 109.50801 * 189.10152 * 28 8 7
43 43 H 1.08999 * 109.71355 * 315.59305 * 29 4 3
44 44 H 1.08993 * 109.71564 * 76.23344 * 29 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2820 1.0866 0.0000
4 6 3.5362 0.7325 -0.0005
5 7 3.5896 -0.6133 0.0008
6 7 2.2675 -1.0663 -0.0005
7 6 4.8197 -1.4053 0.0037
8 6 5.9851 -0.5050 0.4298
9 1 5.8840 -0.2553 1.4859
10 7 7.2510 -1.2100 0.2137
11 6 7.7242 -2.0495 1.1560
12 8 7.1006 -2.2213 2.1856
13 6 8.9994 -2.7590 0.9386
14 6 9.7192 -2.5643 -0.2423
15 6 10.9101 -3.2297 -0.4391
16 6 11.3982 -4.0918 0.5298
17 6 10.6978 -4.2941 1.7017
18 6 9.4989 -3.6286 1.9193
19 8 8.8123 -3.8217 3.0717
20 6 9.2861 -4.7594 3.9166
21 1 10.2189 -5.2591 3.7007
22 6 8.5756 -5.0823 5.0632
23 7 7.4394 -4.4741 5.3259
24 14 9.2324 -6.3810 6.2343
25 1 10.0996 -5.7360 7.2527
26 1 8.0965 -7.0589 6.9090
27 1 10.0232 -7.3804 5.4720
28 6 5.9683 0.7807 -0.4021
29 6 4.7523 1.6264 -0.0013
30 1 -0.3633 -0.0003 -1.0277
31 1 -0.3633 -0.8898 0.5141
32 1 -0.3633 0.8902 0.5135
33 1 4.7204 -2.2320 0.7070
34 1 5.0045 -1.7968 -0.9967
35 1 7.7486 -1.0726 -0.6075
36 1 9.3430 -1.8932 -1.0003
37 1 11.4658 -3.0778 -1.3526
38 1 12.3321 -4.6091 0.3665
39 1 11.0850 -4.9673 2.4522
40 1 6.9428 -4.6997 6.1280
41 1 5.9041 0.5283 -1.4604
42 1 6.8816 1.3460 -0.2167
43 1 4.6140 2.4347 -0.7194
44 1 4.9045 2.0411 0.9951
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000171343153.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:49
Heat of formation + Delta-G solvation = 28.594146 kcal
Electronic energy + Delta-G solvation = -29150.752478 eV
Core-core repulsion = 25069.654157 eV
Total energy + Delta-G solvation = -4081.098320 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-43.44751 -41.38603 -40.11736 -38.23208 -37.95133 -35.02459 -34.34104 -34.29544
-32.71620 -31.69855 -30.56967 -30.38779 -28.64686 -27.36470 -25.49404 -24.70735
-23.64641 -22.89962 -21.85013 -21.45500 -20.75062 -19.85402 -19.17034 -18.03829
-17.88508 -17.46856 -16.90421 -16.37628 -16.24175 -15.99373 -15.86718 -15.76631
-15.35535 -15.29529 -15.17389 -14.94397 -14.58856 -14.27896 -14.12335 -14.05462
-13.60574 -13.56440 -13.44760 -13.03162 -12.91906 -12.80263 -12.67550 -12.53667
-12.37152 -12.20893 -12.13682 -12.10185 -11.45125 -11.17335 -10.85185 -10.82474
-10.69455 -10.42622 -10.28354 -9.81354 -9.04010 -8.46976 -6.17560 0.11193
0.51935 0.73759 1.10477 1.30331 1.41593 1.49120 1.76116 2.04266
2.12868 2.14896 2.85828 2.89184 3.14225 3.25546 3.44252 3.46429
3.64508 3.73674 3.87720 3.96797 4.09228 4.11393 4.27504 4.28906
4.38630 4.51027 4.54819 4.67642 4.69184 4.72666 4.83632 4.91308
4.92625 4.97281 5.03296 5.06804 5.14637 5.25657 5.32708 5.43896
5.48160 5.61347 5.71338 5.76029 5.93765 6.17849 6.62403 6.93092
7.01252 7.41409 7.78501 8.73201
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.011422 B = 0.003016 C = 0.002497
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2450.714306 B = 9282.336033 C =11212.788168
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 C 0.205 3.795
3 N -0.560 5.560
4 C 0.274 3.726
5 N -0.380 5.380
6 N -0.360 5.360
7 C 0.120 3.880
8 C 0.143 3.857
9 H 0.066 0.934
10 N -0.703 5.703
11 C 0.552 3.448
12 O -0.564 6.564
13 C -0.244 4.244
14 C -0.025 4.025
15 C -0.200 4.200
16 C -0.040 4.040
17 C -0.260 4.260
18 C 0.148 3.852
19 O -0.189 6.189
20 C -0.425 4.425
21 H 0.107 0.893
22 C -0.022 4.022
23 N -0.906 5.906
24 Si 1.019 2.981
25 H -0.261 1.261
26 H -0.275 1.275
27 H -0.247 1.247
28 C -0.119 4.119
29 C -0.034 4.034
30 H 0.101 0.899
31 H 0.084 0.916
32 H 0.098 0.902
33 H 0.057 0.943
34 H 0.111 0.889
35 H 0.421 0.579
36 H 0.169 0.831
37 H 0.165 0.835
38 H 0.151 0.849
39 H 0.120 0.880
40 H 0.269 0.731
41 H 0.106 0.894
42 H 0.128 0.872
43 H 0.143 0.857
44 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.639 11.398 -18.017 21.329
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.077 4.077
3 N -0.289 5.289
4 C -0.002 4.002
5 N -0.171 5.171
6 N -0.189 5.189
7 C -0.004 4.004
8 C 0.036 3.964
9 H 0.084 0.916
10 N -0.359 5.359
11 C 0.343 3.657
12 O -0.442 6.442
13 C -0.249 4.249
14 C -0.043 4.043
15 C -0.219 4.219
16 C -0.058 4.058
17 C -0.279 4.279
18 C 0.093 3.907
19 O -0.092 6.092
20 C -0.501 4.501
21 H 0.124 0.876
22 C -0.221 4.221
23 N -0.542 5.542
24 Si 0.838 3.162
25 H -0.186 1.186
26 H -0.200 1.200
27 H -0.171 1.171
28 C -0.157 4.157
29 C -0.073 4.073
30 H 0.119 0.881
31 H 0.103 0.897
32 H 0.117 0.883
33 H 0.075 0.925
34 H 0.129 0.871
35 H 0.261 0.739
36 H 0.186 0.814
37 H 0.183 0.817
38 H 0.169 0.831
39 H 0.138 0.862
40 H 0.078 0.922
41 H 0.124 0.876
42 H 0.147 0.853
43 H 0.160 0.840
44 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -0.511 10.892 -17.014 20.208
hybrid contribution 0.224 -1.176 1.076 1.610
sum -0.287 9.716 -15.938 18.668
Atomic orbital electron populations
1.20243 0.81264 1.04788 1.04991 1.25249 0.99933 0.85172 0.97305
1.70198 1.00459 1.31020 1.27237 1.25270 0.96194 0.83921 0.94839
1.50139 1.05344 1.06577 1.55042 1.77909 0.87703 1.24305 1.29022
1.22325 0.79592 0.94558 1.03894 1.21016 0.81887 0.92161 1.01359
0.91552 1.45428 1.22610 1.46014 1.21870 1.18585 0.85305 0.78930
0.82904 1.90976 1.60350 1.63860 1.28988 1.19224 0.99182 1.08225
0.98221 1.21359 0.93465 0.96524 0.92996 1.21202 0.98041 1.01122
1.01502 1.21440 0.98403 0.94913 0.91076 1.21295 0.97287 1.07254
1.02082 1.20132 0.91344 0.92957 0.86292 1.84171 1.48737 1.51543
1.24719 1.22006 1.08180 1.17091 1.02811 0.87605 1.26723 0.95454
1.00680 0.99265 1.70319 1.15226 1.42103 1.26520 0.84592 0.77952
0.76550 0.77095 1.18578 1.19977 1.17078 1.22050 1.00145 0.92620
1.00838 1.20634 0.84406 0.95673 1.06633 0.88059 0.89702 0.88320
0.92453 0.87117 0.73873 0.81388 0.81731 0.83114 0.86211 0.92176
0.87594 0.85343 0.83961 0.87158
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -1.05 10.51 71.24 0.75 -0.30 16
2 C 0.21 6.06 8.15 138.49 1.13 7.19 16
3 N -0.56 -16.25 11.18 -179.31 -2.01 -18.25 16
4 C 0.27 7.13 7.72 138.37 1.07 8.20 16
5 N -0.38 -11.73 4.04 -338.33 -1.37 -13.10 16
6 N -0.36 -12.42 12.74 -51.08 -0.65 -13.07 16
7 C 0.12 3.49 6.87 86.52 0.59 4.08 16
8 C 0.14 3.51 2.47 45.14 0.11 3.62 16
9 H 0.07 2.16 7.55 -2.39 -0.02 2.15 16
10 N -0.70 -17.88 5.03 -445.00 -2.24 -20.12 16
11 C 0.55 22.62 7.73 86.69 0.67 23.29 16
12 O -0.56 -31.49 14.83 16.89 0.25 -31.24 16
13 C -0.24 -9.69 5.89 -19.99 -0.12 -9.80 16
14 C -0.03 -0.65 9.54 22.52 0.21 -0.44 16
15 C -0.20 -4.72 10.02 22.25 0.22 -4.50 16
16 C -0.04 -1.17 10.03 22.30 0.22 -0.94 16
17 C -0.26 -10.68 9.16 22.36 0.20 -10.47 16
18 C 0.15 7.30 6.66 22.91 0.15 7.46 16
19 O -0.19 -11.77 7.84 0.76 0.01 -11.76 16
20 C -0.42 -25.42 9.49 67.93 0.64 -24.77 16
21 H 0.11 5.68 5.21 -2.91 -0.02 5.66 16
22 C -0.02 -1.31 5.49 84.85 0.47 -0.84 16
23 N -0.91 -59.31 13.67 21.62 0.30 -59.02 16
24 Si 1.02 44.26 29.55 68.60 2.03 46.29 16
25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16
26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16
27 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16
28 C -0.12 -1.45 5.43 30.79 0.17 -1.29 16
29 C -0.03 -0.49 6.33 30.07 0.19 -0.30 16
30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16
31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16
33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16
34 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16
35 H 0.42 6.43 6.63 -92.71 -0.62 5.82 16
36 H 0.17 2.41 6.40 -2.91 -0.02 2.39 16
37 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16
38 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16
39 H 0.12 5.07 5.64 -2.91 -0.02 5.06 16
40 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16
41 H 0.11 0.83 8.12 -2.39 -0.02 0.81 16
42 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16
43 H 0.14 1.21 8.14 -2.39 -0.02 1.20 16
44 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16
Total: -1.00 -97.58 370.81 3.45 -94.12
By element:
Atomic # 1 Polarization: 25.53 SS G_CDS: 0.45 Total: 25.98 kcal
Atomic # 6 Polarization: -6.51 SS G_CDS: 6.69 Total: 0.18 kcal
Atomic # 7 Polarization: -117.60 SS G_CDS: -5.97 Total: -123.56 kcal
Atomic # 8 Polarization: -43.26 SS G_CDS: 0.26 Total: -43.00 kcal
Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal
Total: -97.58 3.45 -94.12 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171343153.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.718 kcal
(2) G-P(sol) polarization free energy of solvation -97.578 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.124 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.594 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds