Wall clock time and date at job start Sat Apr 11 2020 06:34:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.38130 * 126.29539 * 2 1
4 4 C 1.47285 * 126.42482 * 0.03890 * 3 2 1
5 5 O 1.21528 * 120.00349 * 0.24292 * 4 3 2
6 6 O 1.34757 * 120.00043 * 180.24700 * 4 3 2
7 7 C 1.45195 * 117.00156 * 179.97438 * 6 4 3
8 8 H 1.09007 * 109.25929 * 29.99694 * 7 6 4
9 9 C 1.52751 * 109.26210 * 149.48512 * 7 6 4
10 10 C 1.53309 * 108.42346 * 171.33760 * 9 7 6
11 11 C 1.52754 * 108.37354 * 290.01234 * 10 9 7
12 12 C 1.50613 * 110.52888 * 51.10422 * 11 10 9
13 13 N 1.32827 * 117.73959 * 162.48118 * 12 11 10
14 14 C 1.31847 * 120.57696 * 179.67891 * 13 12 11
15 15 C 1.38406 * 119.75112 * 0.02562 * 14 13 12
16 16 N 1.31838 * 119.75674 * 0.12212 * 15 14 13
17 17 C 1.32833 * 120.57558 * 359.96824 * 16 15 14
18 18 C 1.41342 * 107.14613 * 180.22488 * 3 2 1
19 19 N 1.30433 * 108.01304 * 359.77816 * 18 3 2
20 20 N 1.34224 * 126.29797 * 179.84097 * 2 1 3
21 21 C 1.46499 * 125.74472 * 0.03982 * 20 2 1
22 22 C 1.50701 * 109.46992 * 269.71382 * 21 20 2
23 23 H 1.07998 * 120.00129 * 0.02562 * 22 21 20
24 24 C 1.37880 * 119.99861 * 179.97438 * 22 21 20
25 25 N 1.31510 * 119.99913 * 0.02562 * 24 22 21
26 26 Si 1.86797 * 119.99734 * 180.02562 * 24 22 21
27 27 H 1.48506 * 109.47294 * 60.00559 * 26 24 22
28 28 H 1.48503 * 109.46954 * 180.02562 * 26 24 22
29 29 H 1.48503 * 109.47431 * 300.00157 * 26 24 22
30 30 H 1.08998 * 109.47351 * 270.15214 * 1 2 3
31 31 H 1.08997 * 109.47385 * 30.16155 * 1 2 3
32 32 H 1.09004 * 109.46710 * 150.16018 * 1 2 3
33 33 H 1.09001 * 109.67744 * 291.03153 * 9 7 6
34 34 H 1.08995 * 109.67913 * 51.56869 * 9 7 6
35 35 H 1.09004 * 109.68744 * 170.29916 * 10 9 7
36 36 H 1.08997 * 109.70360 * 49.73975 * 10 9 7
37 37 H 1.08991 * 109.26630 * 290.83603 * 11 10 9
38 38 H 1.08999 * 109.23369 * 171.35107 * 11 10 9
39 39 H 1.07997 * 120.12252 * 180.02562 * 14 13 12
40 40 H 1.07991 * 120.12162 * 180.11992 * 15 14 13
41 41 H 1.08001 * 125.99467 * 179.76211 * 18 3 2
42 42 H 1.09002 * 109.47391 * 149.71372 * 21 20 2
43 43 H 1.09001 * 109.46813 * 29.71429 * 21 20 2
44 44 H 0.97002 * 119.99768 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3246 1.1133 0.0000
4 6 1.8871 2.5197 0.0008
5 8 0.7017 2.7873 0.0060
6 8 2.8013 3.5097 -0.0043
7 6 2.2981 4.8716 -0.0038
8 1 1.3397 4.9006 0.5149
9 6 3.2918 5.7757 0.7231
10 6 2.8558 7.2322 0.5259
11 6 3.0899 7.6113 -0.9352
12 6 2.4672 6.5913 -1.8519
13 7 2.2667 6.9387 -3.1181
14 6 1.7311 6.0873 -3.9705
15 6 1.3738 4.8204 -3.5428
16 7 1.5693 4.4748 -2.2856
17 6 2.1072 5.3319 -1.4251
18 6 3.6598 0.6497 -0.0053
19 7 3.6339 -0.6544 -0.0034
20 7 2.3015 -1.0818 0.0030
21 6 1.8498 -2.4754 0.0060
22 6 1.7009 -2.9521 1.4279
23 1 1.9203 -2.2836 2.2473
24 6 1.2835 -4.2412 1.6827
25 7 1.0159 -5.0550 0.6849
26 14 1.0983 -4.8318 3.4451
27 1 0.1004 -3.9862 4.1483
28 1 0.6406 -6.2445 3.4482
29 1 2.4071 -4.7345 4.1400
30 1 -0.3634 0.0027 1.0276
31 1 -0.3634 0.8885 -0.5163
32 1 -0.3633 -0.8915 -0.5114
33 1 3.2969 5.5356 1.7863
34 1 4.2898 5.6317 0.3091
35 1 3.4446 7.8826 1.1727
36 1 1.7977 7.3348 0.7667
37 1 4.1617 7.6601 -1.1268
38 1 2.6452 8.5875 -1.1286
39 1 1.5718 6.3773 -4.9985
40 1 0.9365 4.1175 -4.2363
41 1 4.5460 1.2669 -0.0103
42 1 2.5823 -3.0959 -0.5104
43 1 0.8890 -2.5470 -0.5037
44 1 0.7226 -5.9621 0.8641
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000893289205.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:54
Heat of formation + Delta-G solvation = 23.812038 kcal
Electronic energy + Delta-G solvation = -29245.683762 eV
Core-core repulsion = 25164.378074 eV
Total energy + Delta-G solvation = -4081.305688 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.67680 -40.79227 -39.51875 -37.18775 -35.74966 -34.43641 -33.89143 -32.12312
-31.23704 -31.09421 -30.01923 -27.56098 -26.70942 -25.48488 -24.26573 -23.80277
-23.06242 -21.98884 -20.62176 -20.25021 -18.86113 -17.99740 -17.42532 -17.15373
-16.78229 -16.49491 -16.08560 -15.29166 -15.11367 -15.05913 -14.54051 -14.49988
-14.21378 -14.07935 -13.55712 -13.48212 -13.29228 -13.07041 -12.64809 -12.45788
-12.12597 -12.05060 -11.91135 -11.78874 -11.67784 -11.56514 -11.51141 -11.33092
-11.14511 -10.91871 -10.87511 -10.68141 -10.39310 -10.25231 -9.96314 -9.71702
-9.29850 -9.21315 -8.71492 -8.60991 -8.01081 -6.34409 -4.42413 0.49045
0.91094 2.01965 2.77043 2.79921 3.19699 3.23756 3.26436 3.39013
3.51907 3.60079 3.76787 3.88899 4.16718 4.23635 4.24132 4.54686
4.60935 4.67636 4.83899 4.97583 5.00767 5.05280 5.13176 5.19189
5.21757 5.31361 5.41387 5.51402 5.56273 5.58546 5.69072 5.72868
5.85451 6.01548 6.08127 6.10009 6.40435 6.43067 6.76469 6.85564
6.89645 7.06985 7.17176 7.54022 7.58075 7.74394 7.76374 8.28104
8.40844 8.62724 9.24460 10.73832
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.021971 B = 0.002461 C = 0.002350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1274.093030 B =11376.808494 C =11912.149687
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C 0.171 3.829
3 C -0.313 4.313
4 C 0.557 3.443
5 O -0.517 6.517
6 O -0.341 6.341
7 C 0.149 3.851
8 H 0.104 0.896
9 C -0.117 4.117
10 C -0.118 4.118
11 C -0.067 4.067
12 C 0.092 3.908
13 N -0.445 5.445
14 C 0.054 3.946
15 C 0.052 3.948
16 N -0.414 5.414
17 C 0.069 3.931
18 C 0.078 3.922
19 N -0.298 5.298
20 N -0.312 5.312
21 C 0.251 3.749
22 C -0.541 4.541
23 H 0.065 0.935
24 C 0.068 3.932
25 N -0.890 5.890
26 Si 0.909 3.091
27 H -0.273 1.273
28 H -0.283 1.283
29 H -0.273 1.273
30 H 0.085 0.915
31 H 0.093 0.907
32 H 0.075 0.925
33 H 0.089 0.911
34 H 0.084 0.916
35 H 0.088 0.912
36 H 0.073 0.927
37 H 0.091 0.909
38 H 0.090 0.910
39 H 0.171 0.829
40 H 0.171 0.829
41 H 0.183 0.817
42 H 0.058 0.942
43 H 0.057 0.943
44 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.945 24.281 -4.863 24.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.034 3.966
3 C -0.326 4.326
4 C 0.404 3.596
5 O -0.407 6.407
6 O -0.258 6.258
7 C 0.092 3.908
8 H 0.121 0.879
9 C -0.155 4.155
10 C -0.155 4.155
11 C -0.105 4.105
12 C -0.046 4.046
13 N -0.160 5.160
14 C -0.108 4.108
15 C -0.110 4.110
16 N -0.129 5.129
17 C -0.070 4.070
18 C -0.109 4.109
19 N -0.117 5.117
20 N -0.088 5.088
21 C 0.134 3.866
22 C -0.580 4.580
23 H 0.083 0.917
24 C -0.136 4.136
25 N -0.527 5.527
26 Si 0.735 3.265
27 H -0.198 1.198
28 H -0.209 1.209
29 H -0.199 1.199
30 H 0.104 0.896
31 H 0.112 0.888
32 H 0.094 0.906
33 H 0.107 0.893
34 H 0.102 0.898
35 H 0.107 0.893
36 H 0.091 0.909
37 H 0.109 0.891
38 H 0.108 0.892
39 H 0.188 0.812
40 H 0.188 0.812
41 H 0.200 0.800
42 H 0.076 0.924
43 H 0.075 0.925
44 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 2.228 22.905 -4.894 23.528
hybrid contribution -0.701 0.187 0.545 0.908
sum 1.526 23.092 -4.349 23.548
Atomic orbital electron populations
1.20605 0.86628 1.03987 1.04062 1.21421 0.94921 0.86422 0.93884
1.18808 0.93651 0.89296 1.30894 1.19920 0.83494 0.84714 0.71483
1.90731 1.17778 1.84073 1.48069 1.86645 1.39698 1.14405 1.85052
1.21188 0.99956 0.80046 0.89588 0.87868 1.21686 0.99281 0.93112
1.01426 1.21592 1.02838 0.95610 0.95504 1.20399 1.01261 0.96664
0.92221 1.21861 0.96354 0.94125 0.92253 1.68353 1.10470 1.34896
1.02293 1.23767 0.95191 0.91363 1.00448 1.23813 0.97491 0.96482
0.93228 1.68390 1.07569 1.34068 1.02855 1.22183 0.96236 0.91312
0.97297 1.23890 0.96658 0.92130 0.98223 1.77201 0.98286 1.12329
1.23925 1.49391 1.02608 1.08256 1.48532 1.19880 0.96463 0.70716
0.99512 1.21208 1.47612 0.98205 0.90935 0.91650 1.24920 0.94397
0.95954 0.98343 1.69903 1.44329 1.07203 1.31259 0.86372 0.78901
0.77746 0.83457 1.19836 1.20862 1.19865 0.89632 0.88808 0.90598
0.89279 0.89777 0.89307 0.90867 0.89090 0.89172 0.81200 0.81199
0.80031 0.92382 0.92502 0.92029
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.71 9.56 36.00 0.34 -1.36 16
2 C 0.17 3.54 7.01 -81.59 -0.57 2.97 16
3 C -0.31 -6.09 6.13 -105.08 -0.64 -6.73 16
4 C 0.56 9.99 7.28 34.41 0.25 10.24 16
5 O -0.52 -9.84 13.78 -19.29 -0.27 -10.11 16
6 O -0.34 -5.23 9.58 -40.65 -0.39 -5.62 16
7 C 0.15 1.84 2.63 -28.05 -0.07 1.77 16
8 H 0.10 1.35 7.15 -51.92 -0.37 0.97 16
9 C -0.12 -0.95 5.62 -26.70 -0.15 -1.10 16
10 C -0.12 -0.70 5.98 -26.70 -0.16 -0.86 16
11 C -0.07 -0.48 5.92 -28.05 -0.17 -0.65 16
12 C 0.09 1.00 6.61 -82.38 -0.54 0.46 16
13 N -0.44 -4.90 10.33 -9.37 -0.10 -5.00 16
14 C 0.05 0.51 11.24 -17.48 -0.20 0.32 16
15 C 0.05 0.57 11.24 -17.49 -0.20 0.38 16
16 N -0.41 -5.97 9.14 -9.37 -0.09 -6.05 16
17 C 0.07 0.88 6.37 -82.37 -0.52 0.36 16
18 C 0.08 1.48 11.87 -16.97 -0.20 1.28 16
19 N -0.30 -6.61 12.50 30.87 0.39 -6.23 16
20 N -0.31 -7.14 3.56 -57.76 -0.21 -7.34 16
21 C 0.25 6.26 5.97 -5.19 -0.03 6.23 16
22 C -0.54 -14.56 9.39 -34.44 -0.32 -14.88 16
23 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16
24 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16
25 N -0.89 -24.53 13.29 55.43 0.74 -23.80 16
26 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16
27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
29 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16
30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16
31 H 0.09 1.62 6.52 -51.93 -0.34 1.28 16
32 H 0.08 1.32 7.05 -51.93 -0.37 0.96 16
33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16
35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16
36 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16
37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
39 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16
40 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16
41 H 0.18 2.74 8.06 -52.49 -0.42 2.32 16
42 H 0.06 1.54 8.14 -51.93 -0.42 1.11 16
43 H 0.06 1.40 7.01 -51.93 -0.36 1.03 16
44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16
LS Contribution 374.35 15.07 5.64 5.64
Total: -1.00 -32.92 374.35 -8.22 -41.14
By element:
Atomic # 1 Polarization: 7.16 SS G_CDS: -5.63 Total: 1.53 kcal
Atomic # 6 Polarization: 3.40 SS G_CDS: -3.29 Total: 0.12 kcal
Atomic # 7 Polarization: -49.15 SS G_CDS: 0.73 Total: -48.42 kcal
Atomic # 8 Polarization: -15.07 SS G_CDS: -0.66 Total: -15.73 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -32.92 -8.22 -41.14 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000893289205.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.951 kcal
(2) G-P(sol) polarization free energy of solvation -32.923 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.028 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.812 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds