Wall clock time and date at job start Sat Apr 11 2020 06:34:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.38130 * 126.29539 * 2 1
4 4 C 1.47285 * 126.42482 * 0.03890 * 3 2 1
5 5 O 1.21528 * 120.00349 * 0.24292 * 4 3 2
6 6 O 1.34757 * 120.00043 * 180.24700 * 4 3 2
7 7 C 1.45195 * 117.00156 * 179.97438 * 6 4 3
8 8 H 1.09007 * 109.25929 * 29.99694 * 7 6 4
9 9 C 1.52751 * 109.26210 * 149.48512 * 7 6 4
10 10 C 1.53309 * 108.42346 * 171.33760 * 9 7 6
11 11 C 1.52754 * 108.37354 * 290.01234 * 10 9 7
12 12 C 1.50613 * 110.52888 * 51.10422 * 11 10 9
13 13 N 1.32827 * 117.73959 * 162.48118 * 12 11 10
14 14 C 1.31847 * 120.57696 * 179.67891 * 13 12 11
15 15 C 1.38406 * 119.75112 * 0.02562 * 14 13 12
16 16 N 1.31838 * 119.75674 * 0.12212 * 15 14 13
17 17 C 1.32833 * 120.57558 * 359.96824 * 16 15 14
18 18 C 1.41342 * 107.14613 * 180.22488 * 3 2 1
19 19 N 1.30433 * 108.01304 * 359.77816 * 18 3 2
20 20 N 1.34224 * 126.29797 * 179.84097 * 2 1 3
21 21 C 1.46499 * 125.74472 * 0.03982 * 20 2 1
22 22 C 1.50701 * 109.46992 * 269.71382 * 21 20 2
23 23 H 1.07998 * 120.00129 * 0.02562 * 22 21 20
24 24 C 1.37880 * 119.99861 * 179.97438 * 22 21 20
25 25 N 1.31510 * 119.99913 * 0.02562 * 24 22 21
26 26 Si 1.86797 * 119.99734 * 180.02562 * 24 22 21
27 27 H 1.48506 * 109.47294 * 60.00559 * 26 24 22
28 28 H 1.48503 * 109.46954 * 180.02562 * 26 24 22
29 29 H 1.48503 * 109.47431 * 300.00157 * 26 24 22
30 30 H 1.08998 * 109.47351 * 270.15214 * 1 2 3
31 31 H 1.08997 * 109.47385 * 30.16155 * 1 2 3
32 32 H 1.09004 * 109.46710 * 150.16018 * 1 2 3
33 33 H 1.09001 * 109.67744 * 291.03153 * 9 7 6
34 34 H 1.08995 * 109.67913 * 51.56869 * 9 7 6
35 35 H 1.09004 * 109.68744 * 170.29916 * 10 9 7
36 36 H 1.08997 * 109.70360 * 49.73975 * 10 9 7
37 37 H 1.08991 * 109.26630 * 290.83603 * 11 10 9
38 38 H 1.08999 * 109.23369 * 171.35107 * 11 10 9
39 39 H 1.07997 * 120.12252 * 180.02562 * 14 13 12
40 40 H 1.07991 * 120.12162 * 180.11992 * 15 14 13
41 41 H 1.08001 * 125.99467 * 179.76211 * 18 3 2
42 42 H 1.09002 * 109.47391 * 149.71372 * 21 20 2
43 43 H 1.09001 * 109.46813 * 29.71429 * 21 20 2
44 44 H 0.97002 * 119.99768 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3246 1.1133 0.0000
4 6 1.8871 2.5197 0.0008
5 8 0.7017 2.7873 0.0060
6 8 2.8013 3.5097 -0.0043
7 6 2.2981 4.8716 -0.0038
8 1 1.3397 4.9006 0.5149
9 6 3.2918 5.7757 0.7231
10 6 2.8558 7.2322 0.5259
11 6 3.0899 7.6113 -0.9352
12 6 2.4672 6.5913 -1.8519
13 7 2.2667 6.9387 -3.1181
14 6 1.7311 6.0873 -3.9705
15 6 1.3738 4.8204 -3.5428
16 7 1.5693 4.4748 -2.2856
17 6 2.1072 5.3319 -1.4251
18 6 3.6598 0.6497 -0.0053
19 7 3.6339 -0.6544 -0.0034
20 7 2.3015 -1.0818 0.0030
21 6 1.8498 -2.4754 0.0060
22 6 1.7009 -2.9521 1.4279
23 1 1.9203 -2.2836 2.2473
24 6 1.2835 -4.2412 1.6827
25 7 1.0159 -5.0550 0.6849
26 14 1.0983 -4.8318 3.4451
27 1 0.1004 -3.9862 4.1483
28 1 0.6406 -6.2445 3.4482
29 1 2.4071 -4.7345 4.1400
30 1 -0.3634 0.0027 1.0276
31 1 -0.3634 0.8885 -0.5163
32 1 -0.3633 -0.8915 -0.5114
33 1 3.2969 5.5356 1.7863
34 1 4.2898 5.6317 0.3091
35 1 3.4446 7.8826 1.1727
36 1 1.7977 7.3348 0.7667
37 1 4.1617 7.6601 -1.1268
38 1 2.6452 8.5875 -1.1286
39 1 1.5718 6.3773 -4.9985
40 1 0.9365 4.1175 -4.2363
41 1 4.5460 1.2669 -0.0103
42 1 2.5823 -3.0959 -0.5104
43 1 0.8890 -2.5470 -0.5037
44 1 0.7226 -5.9621 0.8641
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000893289205.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:53
Heat of formation + Delta-G solvation = 4.003571 kcal
Electronic energy + Delta-G solvation = -29246.542722 eV
Core-core repulsion = 25164.378074 eV
Total energy + Delta-G solvation = -4082.164648 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.58094 -42.30976 -40.79004 -38.10987 -36.79706 -35.84296 -35.32003 -33.90408
-32.86366 -31.81547 -30.88664 -29.29908 -28.32920 -26.28797 -25.56392 -24.97826
-24.34118 -23.20328 -21.73851 -21.29402 -20.44714 -18.95234 -18.83687 -18.71307
-18.09905 -17.60273 -17.00653 -16.83188 -16.50010 -16.21875 -15.91161 -15.78029
-15.26229 -15.01902 -14.83319 -14.49807 -14.34628 -14.17976 -14.07897 -13.94968
-13.73218 -13.60960 -13.15743 -13.02247 -12.86898 -12.69421 -12.63029 -12.55464
-12.32132 -12.30964 -12.04436 -11.89224 -11.83268 -11.70406 -11.56566 -11.19120
-10.76313 -10.33443 -10.09595 -10.03707 -9.64688 -8.38609 -6.55050 -0.30890
0.07402 0.47801 1.20073 1.37885 1.39541 1.43085 1.50681 1.91018
2.29075 2.32661 2.65292 2.91527 2.93996 3.12640 3.38131 3.52594
3.65829 3.69905 3.85781 3.91417 4.00801 4.09830 4.12480 4.21753
4.30120 4.36795 4.42218 4.52216 4.60069 4.68712 4.74750 4.82455
4.89411 4.96614 4.98996 5.09180 5.10918 5.13035 5.30231 5.36964
5.47949 5.50999 5.62184 5.72909 5.96803 6.27469 6.52829 6.72323
6.76740 6.96852 7.16024 8.69391
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.021971 B = 0.002461 C = 0.002350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1274.093030 B =11376.808494 C =11912.149687
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 C 0.160 3.840
3 C -0.318 4.318
4 C 0.563 3.437
5 O -0.532 6.532
6 O -0.340 6.340
7 C 0.144 3.856
8 H 0.089 0.911
9 C -0.112 4.112
10 C -0.109 4.109
11 C -0.067 4.067
12 C 0.093 3.907
13 N -0.460 5.460
14 C 0.066 3.934
15 C 0.037 3.963
16 N -0.459 5.459
17 C 0.041 3.959
18 C 0.094 3.906
19 N -0.334 5.334
20 N -0.333 5.333
21 C 0.267 3.733
22 C -0.558 4.558
23 H 0.053 0.947
24 C 0.025 3.975
25 N -0.916 5.916
26 Si 0.971 3.029
27 H -0.266 1.266
28 H -0.273 1.273
29 H -0.273 1.273
30 H 0.089 0.911
31 H 0.101 0.899
32 H 0.077 0.923
33 H 0.100 0.900
34 H 0.088 0.912
35 H 0.121 0.879
36 H 0.071 0.929
37 H 0.105 0.895
38 H 0.102 0.898
39 H 0.208 0.792
40 H 0.189 0.811
41 H 0.220 0.780
42 H 0.033 0.967
43 H 0.054 0.946
44 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.466 26.704 -4.293 27.160
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.023 3.977
3 C -0.331 4.331
4 C 0.410 3.590
5 O -0.422 6.422
6 O -0.257 6.257
7 C 0.088 3.912
8 H 0.107 0.893
9 C -0.150 4.150
10 C -0.146 4.146
11 C -0.105 4.105
12 C -0.044 4.044
13 N -0.176 5.176
14 C -0.096 4.096
15 C -0.125 4.125
16 N -0.174 5.174
17 C -0.097 4.097
18 C -0.093 4.093
19 N -0.153 5.153
20 N -0.110 5.110
21 C 0.148 3.852
22 C -0.596 4.596
23 H 0.071 0.929
24 C -0.177 4.177
25 N -0.554 5.554
26 Si 0.795 3.205
27 H -0.190 1.190
28 H -0.198 1.198
29 H -0.199 1.199
30 H 0.108 0.892
31 H 0.119 0.881
32 H 0.095 0.905
33 H 0.118 0.882
34 H 0.107 0.893
35 H 0.139 0.861
36 H 0.090 0.910
37 H 0.123 0.877
38 H 0.121 0.879
39 H 0.225 0.775
40 H 0.206 0.794
41 H 0.236 0.764
42 H 0.051 0.949
43 H 0.072 0.928
44 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 2.760 25.365 -4.322 25.878
hybrid contribution -0.850 -0.412 0.244 0.975
sum 1.910 24.953 -4.079 25.356
Atomic orbital electron populations
1.20613 0.85238 1.04351 1.04380 1.21902 0.96006 0.86299 0.93469
1.19066 0.93775 0.90099 1.30144 1.19634 0.83496 0.84711 0.71167
1.90715 1.18460 1.84408 1.48665 1.86597 1.39050 1.15575 1.84446
1.21608 1.00674 0.78727 0.90213 0.89282 1.21779 0.98244 0.93518
1.01443 1.21615 1.03339 0.94367 0.95318 1.20558 1.01774 0.96039
0.92094 1.22366 0.95268 0.94003 0.92790 1.68489 1.11218 1.35255
1.02598 1.24350 0.93128 0.90380 1.01776 1.24228 0.97830 0.97791
0.92662 1.68298 1.08849 1.35772 1.04485 1.22310 0.97777 0.92330
0.97301 1.24478 0.97754 0.91305 0.95742 1.77151 0.98251 1.14025
1.25888 1.49161 1.03321 1.07870 1.50607 1.19446 0.95482 0.71867
0.98371 1.21360 1.48173 0.98599 0.91452 0.92852 1.25723 0.93734
0.95859 1.02336 1.69986 1.44620 1.07609 1.33179 0.85402 0.78853
0.77695 0.78564 1.19024 1.19763 1.19857 0.89235 0.88061 0.90464
0.88156 0.89342 0.86095 0.91035 0.87715 0.87941 0.77497 0.79375
0.76364 0.94864 0.92783 0.91601
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -3.22 9.56 71.23 0.68 -2.54 16
2 C 0.16 6.73 7.01 42.17 0.30 7.02 16
3 C -0.32 -12.36 6.13 -20.16 -0.12 -12.48 16
4 C 0.56 20.15 7.28 70.20 0.51 20.66 16
5 O -0.53 -20.40 13.78 19.75 0.27 -20.12 16
6 O -0.34 -10.25 9.58 -56.67 -0.54 -10.79 16
7 C 0.14 3.46 2.63 29.74 0.08 3.53 16
8 H 0.09 2.34 7.15 -2.38 -0.02 2.32 16
9 C -0.11 -1.59 5.62 30.61 0.17 -1.42 16
10 C -0.11 -0.98 5.98 30.62 0.18 -0.79 16
11 C -0.07 -0.77 5.92 29.74 0.18 -0.60 16
12 C 0.09 1.87 6.61 42.27 0.28 2.15 16
13 N -0.46 -9.29 10.33 -183.56 -1.90 -11.19 16
14 C 0.07 1.12 11.24 84.73 0.95 2.07 16
15 C 0.04 0.79 11.24 84.73 0.95 1.74 16
16 N -0.46 -13.19 9.14 -183.57 -1.68 -14.87 16
17 C 0.04 1.03 6.37 42.27 0.27 1.30 16
18 C 0.09 3.52 11.87 85.66 1.02 4.54 16
19 N -0.33 -15.04 12.50 -56.25 -0.70 -15.75 16
20 N -0.33 -15.70 3.56 -336.66 -1.20 -16.90 16
21 C 0.27 13.80 5.97 85.63 0.51 14.31 16
22 C -0.56 -30.68 9.39 25.60 0.24 -30.44 16
23 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16
24 C 0.03 1.35 5.46 84.66 0.46 1.81 16
25 N -0.92 -51.09 13.29 21.45 0.28 -50.81 16
26 Si 0.97 42.44 29.54 68.60 2.03 44.46 16
27 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16
28 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
29 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
30 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16
31 H 0.10 3.53 6.52 -2.39 -0.02 3.52 16
32 H 0.08 2.77 7.05 -2.39 -0.02 2.75 16
33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16
34 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16
35 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16
36 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16
37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16
38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16
39 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16
40 H 0.19 2.97 8.06 -2.92 -0.02 2.94 16
41 H 0.22 6.21 8.06 -2.91 -0.02 6.19 16
42 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16
43 H 0.05 2.77 7.01 -2.39 -0.02 2.76 16
44 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16
Total: -1.00 -72.65 374.35 4.26 -68.39
By element:
Atomic # 1 Polarization: 15.66 SS G_CDS: 1.04 Total: 16.69 kcal
Atomic # 6 Polarization: 4.21 SS G_CDS: 6.66 Total: 10.87 kcal
Atomic # 7 Polarization: -104.31 SS G_CDS: -5.19 Total: -109.50 kcal
Atomic # 8 Polarization: -30.64 SS G_CDS: -0.27 Total: -30.91 kcal
Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal
Total: -72.65 4.26 -68.39 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000893289205.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.393 kcal
(2) G-P(sol) polarization free energy of solvation -72.647 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.390 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds