Wall clock time and date at job start Sat Apr 11 2020 06:35:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.43203 * 179.97438 * 2 1
4 4 C 1.39640 * 120.48664 * 258.90199 * 3 2 1
5 5 N 1.31761 * 120.88079 * 180.02562 * 4 3 2
6 6 C 1.31739 * 122.03790 * 359.72480 * 5 4 3
7 7 C 1.39605 * 120.87324 * 0.54607 * 6 5 4
8 8 C 1.47866 * 120.48481 * 179.74600 * 7 6 5
9 9 O 1.21552 * 119.99680 * 179.71744 * 8 7 6
10 10 N 1.34773 * 120.00028 * 359.44744 * 8 7 6
11 11 C 1.46496 * 119.99975 * 179.97438 * 10 8 7
12 12 C 1.52995 * 109.47522 * 179.97438 * 11 10 8
13 13 H 1.09002 * 112.74428 * 75.77075 * 12 11 10
14 14 C 1.53512 * 113.47915 * 206.62185 * 12 11 10
15 15 C 1.53517 * 83.57481 * 140.79155 * 14 12 11
16 16 N 1.47483 * 87.93290 * 333.97624 * 15 14 12
17 17 C 1.46891 * 111.00000 * 138.70454 * 16 15 14
18 18 C 1.50696 * 109.47349 * 94.02877 * 17 16 15
19 19 O 1.21292 * 120.00235 * 0.02562 * 18 17 16
20 20 N 1.34777 * 120.00483 * 179.97438 * 18 17 16
21 21 C 1.37094 * 120.00609 * 179.97438 * 20 18 17
22 22 H 1.08001 * 119.99609 * 0.02562 * 21 20 18
23 23 C 1.38945 * 120.00333 * 180.02562 * 21 20 18
24 24 N 1.31418 * 119.99857 * 180.02562 * 23 21 20
25 25 Si 1.86795 * 120.00150 * 0.02562 * 23 21 20
26 26 H 1.48504 * 109.47257 * 89.99743 * 25 23 21
27 27 H 1.48501 * 109.47187 * 209.99965 * 25 23 21
28 28 H 1.48506 * 109.46910 * 330.00144 * 25 23 21
29 29 C 1.39673 * 120.49206 * 78.93206 * 3 2 1
30 30 H 4.52724 * 13.92956 * 0.02562 * 4 2 1
31 31 H 1.07993 * 119.56114 * 0.02562 * 4 3 2
32 32 H 1.07996 * 119.56014 * 180.26808 * 6 5 4
33 33 H 0.97004 * 120.00022 * 359.97438 * 10 8 7
34 34 H 1.08999 * 109.47567 * 300.00249 * 11 10 8
35 35 H 1.09010 * 109.47207 * 59.99635 * 11 10 8
36 36 H 1.08998 * 114.16907 * 254.43579 * 14 12 11
37 37 H 1.08998 * 114.16975 * 27.14743 * 14 12 11
38 38 H 1.09005 * 113.47619 * 219.20947 * 15 14 12
39 39 H 1.09002 * 113.53158 * 88.75185 * 15 14 12
40 40 H 1.08998 * 109.47185 * 214.02912 * 17 16 15
41 41 H 1.08997 * 109.47601 * 334.02704 * 17 16 15
42 42 H 0.97002 * 119.99723 * 0.02562 * 20 18 17
43 43 H 0.97001 * 119.99521 * 180.02562 * 24 23 21
44 44 H 1.08004 * 120.91853 * 359.95278 * 29 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6060 0.0006 0.0000
4 6 3.3144 0.2326 1.1808
5 7 4.6320 0.2354 1.1896
6 6 5.3386 0.0170 0.0995
7 6 4.7116 -0.2180 -1.1255
8 6 5.5131 -0.4567 -2.3449
9 8 4.9580 -0.6655 -3.4059
10 7 6.8592 -0.4374 -2.2810
11 6 7.6534 -0.6744 -3.4890
12 6 9.1419 -0.5977 -3.1440
13 1 9.4999 -1.4853 -2.6224
14 6 10.0244 -0.1866 -4.3310
15 6 10.7802 0.6217 -3.2669
16 7 9.5287 0.6653 -2.4879
17 6 9.7913 0.4567 -1.0578
18 6 9.9411 1.7915 -0.3746
19 8 9.8386 2.8160 -1.0158
20 7 10.1879 1.8472 0.9492
21 6 10.3246 3.0615 1.5707
22 1 10.2342 3.9736 0.9995
23 6 10.5796 3.1188 2.9353
24 7 10.7102 4.2829 3.5311
25 14 10.7367 1.5413 3.9232
26 1 12.1546 1.0999 3.9288
27 1 10.2883 1.7838 5.3180
28 1 9.8922 0.4859 3.3081
29 6 3.3149 -0.2301 -1.1812
30 1 -1.0499 -0.0005 -0.0001
31 1 2.7751 0.4120 2.0991
32 1 6.4172 0.0242 0.1533
33 1 7.3022 -0.2665 -1.4351
34 1 7.4228 -1.6624 -3.8874
35 1 7.4142 0.0831 -4.2355
36 1 10.6010 -1.0047 -4.7628
37 1 9.5142 0.4237 -5.0761
38 1 11.1081 1.6006 -3.6170
39 1 11.5766 0.0604 -2.7782
40 1 8.9598 -0.0886 -0.6114
41 1 10.7094 -0.1183 -0.9370
42 1 10.2695 1.0280 1.4622
43 1 10.8885 4.3229 4.4837
44 1 2.7981 -0.4131 -2.1117
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733226789.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:46
Heat of formation + Delta-G solvation = 43.351365 kcal
Electronic energy + Delta-G solvation = -28827.674764 eV
Core-core repulsion = 24747.216365 eV
Total energy + Delta-G solvation = -4080.458399 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.94702 -41.40759 -40.12089 -39.64542 -36.00867 -35.86873 -35.30577 -33.75538
-33.58664 -32.22160 -31.69198 -29.41861 -27.61988 -25.92845 -25.22885 -25.17720
-23.83582 -22.26365 -21.27065 -20.85707 -20.27468 -20.10402 -18.58740 -18.12614
-17.85015 -17.59377 -17.18955 -16.77988 -16.62546 -16.36387 -16.32157 -16.02200
-15.40731 -15.33642 -15.09999 -14.90997 -14.66015 -14.39828 -14.34315 -14.12708
-13.98189 -13.70278 -13.09946 -12.94219 -12.73527 -12.62598 -12.42013 -12.32512
-12.02590 -11.92238 -11.86498 -11.74103 -11.48705 -11.36600 -11.01818 -10.61431
-10.44785 -10.22374 -10.21330 -9.92838 -9.71657 -8.39253 -5.99988 -0.68322
-0.25485 1.31210 1.36716 1.45760 1.51677 1.63043 1.94133 1.99813
2.09973 2.24768 2.64160 2.81788 3.01161 3.16478 3.21462 3.25458
3.52304 3.57376 3.60512 3.66183 3.78963 3.93376 4.08383 4.10779
4.24412 4.27645 4.33466 4.39525 4.41255 4.64120 4.69988 4.79244
4.85755 4.88825 4.98415 5.03670 5.20034 5.27373 5.34132 5.43577
5.55746 5.94369 6.07912 6.28576 6.46565 6.62057 6.64075 6.91445
6.96996 7.42613 8.01172 8.78669
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.007481 B = 0.003827 C = 0.002683
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3741.790509 B = 7314.908872 C =10433.717583
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.209 4.209
3 C -0.043 4.043
4 C 0.144 3.856
5 N -0.498 5.498
6 C 0.139 3.861
7 C -0.191 4.191
8 C 0.566 3.434
9 O -0.568 6.568
10 N -0.707 5.707
11 C 0.138 3.862
12 C 0.016 3.984
13 H 0.118 0.882
14 C -0.114 4.114
15 C -0.004 4.004
16 N -0.476 5.476
17 C 0.015 3.985
18 C 0.452 3.548
19 O -0.609 6.609
20 N -0.592 5.592
21 C -0.325 4.325
22 H 0.052 0.948
23 C -0.015 4.015
24 N -0.937 5.937
25 Si 0.962 3.038
26 H -0.257 1.257
27 H -0.278 1.278
28 H -0.227 1.227
29 C -0.004 4.004
30 H 0.267 0.733
31 H 0.189 0.811
32 H 0.169 0.831
33 H 0.404 0.596
34 H 0.092 0.908
35 H 0.059 0.941
36 H 0.114 0.886
37 H 0.089 0.911
38 H 0.061 0.939
39 H 0.090 0.910
40 H 0.110 0.890
41 H 0.101 0.899
42 H 0.389 0.611
43 H 0.278 0.722
44 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.827 -20.623 -8.700 25.316
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.210 4.210
3 C -0.045 4.045
4 C -0.013 4.013
5 N -0.206 5.206
6 C -0.018 4.018
7 C -0.196 4.196
8 C 0.352 3.648
9 O -0.448 6.448
10 N -0.358 5.358
11 C 0.015 3.985
12 C -0.094 4.094
13 H 0.136 0.864
14 C -0.152 4.152
15 C -0.133 4.133
16 N -0.199 5.199
17 C -0.117 4.117
18 C 0.240 3.760
19 O -0.492 6.492
20 N -0.234 5.234
21 C -0.454 4.454
22 H 0.070 0.930
23 C -0.214 4.214
24 N -0.578 5.578
25 Si 0.782 3.218
26 H -0.181 1.181
27 H -0.204 1.204
28 H -0.150 1.150
29 C -0.030 4.030
30 H 0.283 0.717
31 H 0.206 0.794
32 H 0.186 0.814
33 H 0.241 0.759
34 H 0.110 0.890
35 H 0.078 0.922
36 H 0.132 0.868
37 H 0.108 0.892
38 H 0.079 0.921
39 H 0.108 0.892
40 H 0.128 0.872
41 H 0.119 0.881
42 H 0.225 0.775
43 H 0.087 0.913
44 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -12.185 -19.208 -8.929 24.437
hybrid contribution 0.485 -0.349 0.781 0.983
sum -11.700 -19.557 -8.148 24.203
Atomic orbital electron populations
1.25895 0.96385 0.95394 0.95391 1.19757 0.91749 1.04586 1.04929
1.16946 0.89261 1.03934 0.94390 1.23621 0.89240 0.90363 0.98078
1.67787 1.08590 1.13685 1.30514 1.23257 1.01086 0.90665 0.86823
1.20879 0.95058 1.08522 0.95166 1.18047 0.82627 0.76505 0.87585
1.90748 1.71939 1.51115 1.31028 1.45846 1.05203 1.71087 1.13664
1.21519 0.88532 1.02133 0.86346 1.23894 0.94335 0.93743 0.97401
0.86420 1.23094 0.96813 1.00182 0.95082 1.23878 0.92752 1.01054
0.95625 1.68821 1.21135 1.29047 1.00898 1.22573 1.04087 0.93272
0.91753 1.20866 0.81211 0.92105 0.81864 1.90566 1.54949 1.38302
1.65402 1.42035 1.66005 1.07219 1.08131 1.18948 1.48065 0.85605
0.92800 0.93028 1.26108 0.96155 1.01923 0.97188 1.69816 1.49081
1.26990 1.11881 0.85404 0.80174 0.78021 0.78182 1.18095 1.20369
1.14975 1.21879 0.92206 0.90255 0.98637 0.71690 0.79380 0.81373
0.75912 0.88963 0.92212 0.86806 0.89194 0.92081 0.89234 0.87169
0.88107 0.77519 0.91259 0.82923
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.43 19.25 74.32 1.43 0.01 16
2 C -0.21 -3.95 13.27 30.02 0.40 -3.55 16
3 C -0.04 -0.96 5.73 -21.35 -0.12 -1.08 16
4 C 0.14 3.22 10.91 85.04 0.93 4.15 16
5 N -0.50 -13.28 10.33 -193.75 -2.00 -15.28 16
6 C 0.14 3.52 10.71 85.04 0.91 4.43 16
7 C -0.19 -4.84 5.89 -20.02 -0.12 -4.96 16
8 C 0.57 15.22 7.78 86.79 0.68 15.89 16
9 O -0.57 -18.21 16.41 -3.88 -0.06 -18.27 16
10 N -0.71 -16.06 5.42 -465.96 -2.52 -18.58 16
11 C 0.14 2.71 5.81 86.38 0.50 3.21 16
12 C 0.02 0.26 3.23 42.19 0.14 0.39 16
13 H 0.12 1.25 7.91 -2.39 -0.02 1.24 16
14 C -0.11 -1.71 8.00 30.94 0.25 -1.46 16
15 C 0.00 -0.10 7.71 83.58 0.64 0.55 16
16 N -0.48 -12.55 5.39 -906.69 -4.88 -17.44 16
17 C 0.01 0.40 5.05 85.56 0.43 0.83 16
18 C 0.45 19.61 7.85 87.66 0.69 20.30 16
19 O -0.61 -33.71 16.01 -3.07 -0.05 -33.75 16
20 N -0.59 -26.97 5.09 -306.99 -1.56 -28.53 16
21 C -0.32 -18.90 10.16 84.04 0.85 -18.04 16
22 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16
23 C -0.02 -0.85 5.50 84.92 0.47 -0.39 16
24 N -0.94 -56.77 13.96 21.66 0.30 -56.47 16
25 Si 0.96 38.30 27.74 68.60 1.90 40.20 16
26 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16
27 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16
28 H -0.23 -7.42 6.52 99.48 0.65 -6.77 16
29 C 0.00 -0.09 9.44 22.99 0.22 0.13 16
30 H 0.27 0.68 7.80 -4.42 -0.03 0.65 16
31 H 0.19 3.12 8.06 -2.91 -0.02 3.09 16
32 H 0.17 3.72 6.41 -2.91 -0.02 3.70 16
33 H 0.40 8.53 4.28 -92.71 -0.40 8.13 16
34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16
35 H 0.06 1.41 7.87 -2.38 -0.02 1.39 16
36 H 0.11 0.98 8.14 -2.39 -0.02 0.97 16
37 H 0.09 1.51 7.94 -2.39 -0.02 1.49 16
38 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16
39 H 0.09 1.61 7.42 -2.39 -0.02 1.59 16
40 H 0.11 2.26 6.27 -2.39 -0.01 2.24 16
41 H 0.10 2.05 7.30 -2.39 -0.02 2.03 16
42 H 0.39 14.41 5.76 -92.71 -0.53 13.88 16
43 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16
44 H 0.15 3.50 7.73 -2.91 -0.02 3.48 16
Total: -1.00 -88.02 382.22 -0.51 -88.54
By element:
Atomic # 1 Polarization: 39.11 SS G_CDS: 0.08 Total: 39.18 kcal
Atomic # 6 Polarization: 12.11 SS G_CDS: 8.29 Total: 20.41 kcal
Atomic # 7 Polarization: -125.62 SS G_CDS: -10.67 Total: -136.30 kcal
Atomic # 8 Polarization: -51.92 SS G_CDS: -0.11 Total: -52.03 kcal
Atomic # 14 Polarization: 38.30 SS G_CDS: 1.90 Total: 40.20 kcal
Total: -88.02 -0.51 -88.54 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733226789.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.889 kcal
(2) G-P(sol) polarization free energy of solvation -88.024 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.865 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.538 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.351 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds