Wall clock time and date at job start Sat Apr 11 2020 06:35:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53001 * 109.47125 * 2 1
4 4 N 1.46499 * 109.46987 * 180.02562 * 3 2 1
5 5 C 1.36760 * 127.13969 * 270.02084 * 4 3 2
6 6 C 1.50696 * 126.34058 * 0.02562 * 5 4 3
7 7 O 1.42902 * 109.47034 * 90.00331 * 6 5 4
8 8 N 1.30297 * 107.31564 * 180.02562 * 5 4 3
9 9 N 1.28527 * 110.07934 * 359.76877 * 8 5 4
10 10 C 1.31287 * 109.85777 * 0.38632 * 9 8 5
11 11 S 1.76191 * 126.48673 * 179.88371 * 10 9 8
12 12 C 1.81007 * 100.00113 * 359.68917 * 11 10 9
13 13 H 1.08997 * 109.46742 * 305.00495 * 12 11 10
14 14 C 1.53002 * 109.46849 * 64.99732 * 12 11 10
15 15 C 1.50696 * 109.47471 * 184.99805 * 12 11 10
16 16 O 1.21280 * 120.00095 * 340.00421 * 15 12 11
17 17 N 1.34771 * 119.99966 * 159.99972 * 15 12 11
18 18 C 1.46496 * 120.00157 * 359.97438 * 17 15 12
19 19 C 1.46506 * 120.00084 * 180.02562 * 17 15 12
20 20 C 1.50699 * 109.46928 * 270.00021 * 19 17 15
21 21 H 1.08003 * 119.99963 * 0.02562 * 20 19 17
22 22 C 1.37873 * 119.99865 * 179.97438 * 20 19 17
23 23 N 1.31514 * 120.00518 * 0.02562 * 22 20 19
24 24 Si 1.86803 * 119.99987 * 179.97438 * 22 20 19
25 25 H 1.48500 * 109.46922 * 90.00621 * 24 22 20
26 26 H 1.48500 * 109.47411 * 210.00442 * 24 22 20
27 27 H 1.48494 * 109.47378 * 330.00637 * 24 22 20
28 28 H 1.09004 * 109.47059 * 300.00357 * 1 2 3
29 29 H 1.09001 * 109.46854 * 59.99767 * 1 2 3
30 30 H 1.08998 * 109.46935 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47001 * 240.00070 * 2 1 3
32 32 H 1.08996 * 109.46766 * 119.99748 * 2 1 3
33 33 H 1.09006 * 109.47054 * 59.99527 * 3 2 1
34 34 H 1.09002 * 109.47083 * 300.00274 * 3 2 1
35 35 H 1.09004 * 109.47226 * 209.99346 * 6 5 4
36 36 H 1.08993 * 109.47458 * 329.99703 * 6 5 4
37 37 H 0.96697 * 113.99830 * 180.02562 * 7 6 5
38 38 H 1.09000 * 109.46872 * 180.02562 * 14 12 11
39 39 H 1.09002 * 109.47377 * 300.00294 * 14 12 11
40 40 H 1.08994 * 109.47069 * 60.00359 * 14 12 11
41 41 H 1.08995 * 109.47445 * 269.99904 * 18 17 15
42 42 H 1.09001 * 109.47057 * 30.00532 * 18 17 15
43 43 H 1.08999 * 109.47333 * 150.00092 * 18 17 15
44 44 H 1.09004 * 109.47073 * 29.99849 * 19 17 15
45 45 H 1.09000 * 109.47212 * 149.99932 * 19 17 15
46 46 H 0.96992 * 120.00316 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 3.5051 1.4425 -0.0006
5 6 4.3312 1.4419 1.0892
6 6 3.9033 1.4406 2.5342
7 8 3.7686 0.0929 2.9899
8 7 5.5568 1.4426 0.6468
9 7 5.5620 1.4388 -0.6384
10 6 4.3290 1.4437 -1.0894
11 16 3.8316 1.4440 -2.7796
12 6 5.4530 1.4457 -3.5844
13 1 6.0397 2.2878 -3.2175
14 6 6.1819 0.1389 -3.2656
15 6 5.2736 1.5700 -5.0755
16 8 4.2086 1.2900 -5.5836
17 7 6.2967 1.9924 -5.8443
18 6 7.5830 2.3313 -5.2306
19 6 6.1222 2.1138 -7.2939
20 6 6.4936 0.8117 -7.9553
21 1 6.8259 -0.0230 -7.3558
22 6 6.4081 0.6855 -9.3256
23 7 6.0029 1.7017 -10.0556
24 14 6.8691 -0.9284 -10.1456
25 1 5.6680 -1.7965 -10.2398
26 1 7.3934 -0.6591 -11.5086
27 1 7.9123 -1.6125 -9.3402
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8934 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 1.6766 1.9564 0.8900
34 1 1.6767 1.9564 -0.8900
35 1 4.6534 1.9541 3.1357
36 1 2.9467 1.9541 2.6303
37 1 3.4946 0.0158 3.9140
38 1 7.1584 0.1401 -3.7498
39 1 6.3117 0.0489 -2.1870
40 1 5.5952 -0.7032 -3.6324
41 1 7.5897 3.3872 -4.9602
42 1 7.7293 1.7261 -4.3359
43 1 8.3872 2.1327 -5.9390
44 1 5.0816 2.3504 -7.5160
45 1 6.7643 2.9094 -7.6718
46 1 5.9431 1.6130 -11.0196
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000431234372.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:22
Heat of formation + Delta-G solvation = -29.851444 kcal
Electronic energy + Delta-G solvation = -27807.223511 eV
Core-core repulsion = 23859.034751 eV
Total energy + Delta-G solvation = -3948.188760 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.151 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-44.05472 -40.90000 -37.93765 -37.21323 -36.74021 -35.10103 -34.10131 -33.61259
-32.37150 -29.75353 -28.17595 -27.59038 -27.38713 -26.02202 -24.36707 -24.01931
-23.02740 -21.88601 -20.43034 -19.01980 -18.69676 -18.64172 -18.20475 -17.63095
-17.11114 -17.03168 -16.39518 -16.33588 -16.24637 -15.79033 -15.48376 -15.25330
-14.70471 -14.66646 -14.56038 -14.04724 -13.77423 -13.62356 -13.51177 -13.44785
-13.23117 -13.15613 -13.07841 -12.97786 -12.75395 -12.57589 -12.53957 -12.39773
-12.21228 -12.01668 -11.78399 -11.71787 -11.37710 -11.34463 -11.09749 -11.04979
-10.78395 -10.65223 -9.54336 -8.85229 -8.23560 -6.37780 -0.22009 0.41101
0.73820 1.37156 1.39750 1.46081 1.49000 1.54831 1.59982 2.20771
2.40165 3.04260 3.06710 3.36603 3.47888 3.69949 3.71639 3.75570
3.87032 3.90315 4.10682 4.15895 4.26834 4.28331 4.40568 4.49784
4.56309 4.61639 4.64918 4.71896 4.77386 4.81697 4.90592 4.95472
5.08825 5.12641 5.13964 5.19404 5.32784 5.50364 5.63158 5.76418
6.03023 6.54083 6.70642 6.85221 7.14554 7.34421 7.43375 8.83960
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.019127 B = 0.002550 C = 0.002412
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1463.585264 B =10978.588624 C =11608.233227
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.136 4.136
3 C 0.095 3.905
4 N -0.448 5.448
5 C 0.180 3.820
6 C 0.171 3.829
7 O -0.585 6.585
8 N -0.307 5.307
9 N -0.316 5.316
10 C 0.146 3.854
11 S 0.065 5.935
12 C -0.093 4.093
13 H 0.135 0.865
14 C -0.136 4.136
15 C 0.522 3.478
16 O -0.576 6.576
17 N -0.596 5.596
18 C 0.068 3.932
19 C 0.260 3.740
20 C -0.543 4.543
21 H 0.054 0.946
22 C 0.010 3.990
23 N -0.927 5.927
24 Si 0.966 3.034
25 H -0.280 1.280
26 H -0.274 1.274
27 H -0.262 1.262
28 H 0.079 0.921
29 H 0.059 0.941
30 H 0.064 0.936
31 H 0.048 0.952
32 H 0.074 0.926
33 H 0.136 0.864
34 H 0.101 0.899
35 H 0.099 0.901
36 H 0.104 0.896
37 H 0.413 0.587
38 H 0.086 0.914
39 H 0.088 0.912
40 H 0.058 0.942
41 H 0.074 0.926
42 H 0.090 0.910
43 H 0.076 0.924
44 H 0.004 0.996
45 H 0.031 0.969
46 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.159 1.022 29.600 30.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.174 4.174
3 C -0.025 4.025
4 N -0.141 5.141
5 C -0.090 4.090
6 C 0.091 3.909
7 O -0.395 6.395
8 N -0.148 5.148
9 N -0.161 5.161
10 C -0.230 4.230
11 S 0.294 5.706
12 C -0.226 4.226
13 H 0.153 0.847
14 C -0.194 4.194
15 C 0.307 3.693
16 O -0.457 6.457
17 N -0.326 5.326
18 C -0.074 4.074
19 C 0.139 3.861
20 C -0.581 4.581
21 H 0.073 0.927
22 C -0.190 4.190
23 N -0.567 5.567
24 Si 0.790 3.210
25 H -0.206 1.206
26 H -0.199 1.199
27 H -0.187 1.187
28 H 0.098 0.902
29 H 0.078 0.922
30 H 0.083 0.917
31 H 0.067 0.933
32 H 0.092 0.908
33 H 0.154 0.846
34 H 0.119 0.881
35 H 0.117 0.883
36 H 0.122 0.878
37 H 0.266 0.734
38 H 0.104 0.896
39 H 0.107 0.893
40 H 0.077 0.923
41 H 0.092 0.908
42 H 0.108 0.892
43 H 0.095 0.905
44 H 0.022 0.978
45 H 0.049 0.951
46 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -8.137 0.837 28.091 29.258
hybrid contribution 0.078 -0.511 -0.102 0.527
sum -8.059 0.326 27.989 29.128
Atomic orbital electron populations
1.21662 0.92078 1.03121 1.03219 1.21852 0.98500 0.94338 1.02721
1.22501 0.72615 1.00338 1.07077 1.46690 1.09741 1.53815 1.03842
1.25451 0.86215 1.04186 0.93165 1.20339 1.02662 0.85286 0.82601
1.86488 1.92437 1.25256 1.35278 1.73830 1.19368 1.18491 1.03150
1.74581 1.16536 1.21476 1.03467 1.27091 0.90682 1.07950 0.97272
1.86095 1.07636 1.92495 0.84422 1.23463 0.98727 1.06345 0.94020
0.84673 1.21998 1.00745 0.92695 1.04003 1.19981 0.84088 0.77472
0.87741 1.90676 1.28120 1.51458 1.75428 1.48030 1.12616 1.63448
1.08513 1.22124 0.84240 1.01649 0.99380 1.18876 0.96007 0.96442
0.74825 1.21672 1.45156 0.98881 0.92416 0.92730 1.25821 0.94864
1.00418 0.97851 1.70038 1.47621 1.32539 1.06473 0.85440 0.78533
0.79073 0.77936 1.20636 1.19942 1.18661 0.90229 0.92175 0.91743
0.93294 0.90766 0.84641 0.88113 0.88291 0.87844 0.73437 0.89586
0.89349 0.92307 0.90759 0.89182 0.90472 0.97828 0.95147 0.92337
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.33 9.91 71.98 0.71 -0.61 16
2 C -0.14 -1.90 6.26 30.60 0.19 -1.71 16
3 C 0.10 1.29 5.89 86.38 0.51 1.80 16
4 N -0.45 -9.73 2.81 -513.12 -1.44 -11.17 16
5 C 0.18 3.95 7.70 137.63 1.06 5.01 16
6 C 0.17 1.78 7.41 71.23 0.53 2.31 16
7 O -0.58 -6.61 13.64 -148.98 -2.03 -8.64 16
8 N -0.31 -9.11 12.17 -49.53 -0.60 -9.72 16
9 N -0.32 -9.97 9.73 -56.86 -0.55 -10.52 16
10 C 0.15 4.13 7.76 179.55 1.39 5.53 16
11 S 0.07 2.02 20.50 -56.49 -1.16 0.86 16
12 C -0.09 -3.07 1.86 29.85 0.06 -3.01 16
13 H 0.14 3.99 7.21 -2.40 -0.02 3.97 16
14 C -0.14 -4.16 8.73 71.98 0.63 -3.53 16
15 C 0.52 22.39 6.85 87.66 0.60 22.99 16
16 O -0.58 -29.87 15.62 -3.03 -0.05 -29.92 16
17 N -0.60 -25.79 2.86 -851.14 -2.43 -28.22 16
18 C 0.07 2.14 9.88 127.77 1.26 3.40 16
19 C 0.26 14.01 5.16 85.63 0.44 14.45 16
20 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16
21 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16
22 C 0.01 0.56 5.46 84.65 0.46 1.02 16
23 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16
24 Si 0.97 45.09 29.54 68.60 2.03 47.12 16
25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16
27 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16
28 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16
29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16
30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
33 H 0.14 0.79 7.26 -2.38 -0.02 0.77 16
34 H 0.10 1.41 7.86 -2.39 -0.02 1.39 16
35 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16
36 H 0.10 0.29 7.27 -2.39 -0.02 0.27 16
37 H 0.41 -0.13 9.12 -74.06 -0.68 -0.81 16
38 H 0.09 2.44 6.33 -2.39 -0.02 2.43 16
39 H 0.09 2.67 5.90 -2.39 -0.01 2.66 16
40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
42 H 0.09 2.37 4.76 -2.39 -0.01 2.36 16
43 H 0.08 2.47 8.07 -2.39 -0.02 2.45 16
44 H 0.00 0.22 7.42 -2.38 -0.02 0.20 16
45 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16
46 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16
Total: -1.00 -83.66 394.26 2.46 -81.20
By element:
Atomic # 1 Polarization: 7.77 SS G_CDS: 0.33 Total: 8.10 kcal
Atomic # 6 Polarization: 8.52 SS G_CDS: 8.09 Total: 16.61 kcal
Atomic # 7 Polarization: -110.58 SS G_CDS: -4.75 Total: -115.32 kcal
Atomic # 8 Polarization: -36.48 SS G_CDS: -2.08 Total: -38.56 kcal
Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal
Atomic # 16 Polarization: 2.02 SS G_CDS: -1.16 Total: 0.86 kcal
Total: -83.66 2.46 -81.20 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000431234372.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.349 kcal
(2) G-P(sol) polarization free energy of solvation -83.658 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.309 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.200 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds