Wall clock time and date at job start Sat Apr 11 2020 06:36:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09001 * 109.86949 * 2 1
4 4 C 1.54364 * 110.03260 * 121.06528 * 2 1 3
5 5 H 1.09001 * 110.75732 * 260.02145 * 4 2 1
6 6 N 1.46510 * 110.70350 * 23.30439 * 4 2 1
7 7 C 1.36934 * 119.99769 * 216.96459 * 6 4 2
8 8 H 1.07998 * 120.00596 * 359.97438 * 7 6 4
9 9 C 1.38813 * 119.99694 * 180.02562 * 7 6 4
10 10 N 1.31615 * 120.00058 * 359.97438 * 9 7 6
11 11 Si 1.86797 * 120.00021 * 179.97438 * 9 7 6
12 12 H 1.48504 * 109.47320 * 89.99663 * 11 9 7
13 13 H 1.48502 * 109.47450 * 209.99810 * 11 9 7
14 14 H 1.48508 * 109.47213 * 329.99888 * 11 9 7
15 15 C 1.55155 * 102.92020 * 141.64721 * 4 2 1
16 16 C 1.54905 * 101.61964 * 324.54941 * 15 4 2
17 17 N 1.47016 * 109.87989 * 238.98498 * 2 1 3
18 18 C 1.34779 * 125.64829 * 61.45170 * 17 2 1
19 19 O 1.21564 * 119.99886 * 176.65049 * 18 17 2
20 20 C 1.47816 * 120.00310 * 356.65239 * 18 17 2
21 21 C 1.39653 * 120.02143 * 11.85022 * 20 18 17
22 22 C 1.37733 * 119.96997 * 179.79328 * 21 20 18
23 23 C 1.39437 * 120.02999 * 0.45759 * 22 21 20
24 24 C 1.48399 * 119.97974 * 179.76929 * 23 22 21
25 25 N 1.35223 * 126.41313 * 359.73698 * 24 23 22
26 26 C 1.30966 * 105.58313 * 179.85053 * 25 24 23
27 27 O 1.33681 * 107.12041 * 0.41014 * 26 25 24
28 28 N 1.21287 * 110.02274 * 359.73317 * 27 26 25
29 29 C 1.39441 * 120.04413 * 359.79560 * 23 22 21
30 30 C 1.37728 * 120.02936 * 359.97438 * 29 23 22
31 31 H 1.08996 * 109.46909 * 205.60505 * 1 2 3
32 32 H 1.09008 * 109.46946 * 325.60439 * 1 2 3
33 33 H 1.08995 * 109.47051 * 85.60088 * 1 2 3
34 34 H 0.96996 * 119.99966 * 36.96232 * 6 4 2
35 35 H 0.97005 * 120.00255 * 180.02562 * 10 9 7
36 36 H 1.09000 * 111.00274 * 206.45380 * 15 4 2
37 37 H 1.08997 * 111.00193 * 82.64739 * 15 4 2
38 38 H 1.08995 * 110.36743 * 155.82896 * 16 15 4
39 39 H 1.09005 * 110.36785 * 278.04613 * 16 15 4
40 40 H 1.08001 * 120.01597 * 0.02562 * 21 20 18
41 41 H 1.08004 * 119.98627 * 180.25302 * 22 21 20
42 42 H 1.07999 * 126.44380 * 180.14840 * 26 25 24
43 43 H 1.08005 * 119.98436 * 179.97438 * 29 23 22
44 44 H 1.07999 * 120.01085 * 179.97438 * 30 29 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0588 -0.7483 1.2423
5 1 2.3571 -0.0445 2.0193
6 7 1.0537 -1.6864 1.7486
7 6 0.9117 -1.8754 3.0974
8 1 1.5408 -1.3333 3.7879
9 6 -0.0403 -2.7645 3.5772
10 7 -0.8066 -3.4255 2.7357
11 14 -0.2336 -3.0229 5.4170
12 1 -1.2275 -2.0572 5.9508
13 1 -0.7012 -4.4084 5.6759
14 1 1.0742 -2.8085 6.0872
15 6 3.2918 -1.5107 0.6892
16 6 2.8177 -1.8762 -0.7394
17 7 2.0300 -0.7124 -1.1849
18 6 1.8049 -0.3602 -2.4662
19 8 2.3199 -0.9904 -3.3692
20 6 0.9318 0.7923 -2.7736
21 6 0.5408 1.6639 -1.7548
22 6 -0.2693 2.7399 -2.0431
23 6 -0.7066 2.9538 -3.3497
24 6 -1.5835 4.1106 -3.6582
25 7 -2.0388 5.0301 -2.7774
26 6 -2.7676 5.8603 -3.4807
27 8 -2.7458 5.4287 -4.7457
28 7 -2.0654 4.4283 -4.8314
29 6 -0.3211 2.0812 -4.3667
30 6 0.4928 1.0072 -4.0817
31 1 -0.3633 -0.9267 0.4441
32 1 -0.3633 0.8481 0.5806
33 1 -0.3633 0.0788 -1.0246
34 1 0.4889 -2.1735 1.1285
35 1 -1.4721 -4.0465 3.0709
36 1 3.4921 -2.4073 1.2758
37 1 4.1686 -0.8639 0.6565
38 1 3.6742 -2.0284 -1.3961
39 1 2.1953 -2.7708 -0.7154
40 1 0.8764 1.4964 -0.7421
41 1 -0.5685 3.4164 -1.2562
42 1 -3.2916 6.7280 -3.1080
43 1 -0.6607 2.2475 -5.3783
44 1 0.7909 0.3313 -4.8695
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000987373638.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:58
Heat of formation + Delta-G solvation = 131.045441 kcal
Electronic energy + Delta-G solvation = -29426.430118 eV
Core-core repulsion = 25349.774420 eV
Total energy + Delta-G solvation = -4076.655699 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-45.91698 -40.85995 -38.79036 -37.60002 -36.12505 -34.16336 -33.42619 -32.30491
-31.52406 -31.10958 -29.82843 -28.93199 -25.86835 -25.17991 -24.50442 -23.71897
-23.16198 -22.20073 -21.63076 -19.97360 -19.31873 -18.64849 -18.41866 -17.74577
-17.03745 -16.52507 -16.06142 -15.80443 -15.41465 -14.79936 -14.56714 -14.50696
-14.10987 -13.93110 -13.50972 -13.42504 -13.16656 -13.09093 -12.86072 -12.61573
-12.42378 -12.21519 -11.99400 -11.67252 -11.50388 -11.27514 -11.12414 -11.05081
-10.93307 -10.80940 -10.66726 -10.61414 -10.37680 -10.15233 -9.78537 -9.67270
-9.06366 -9.02887 -8.78695 -8.37094 -7.12751 -5.89944 -3.20507 0.22361
0.98801 1.23957 2.01511 2.63404 2.97046 3.14479 3.22667 3.36162
3.41988 3.43757 3.70316 3.79474 4.46284 4.47726 4.64080 4.73881
4.78999 4.98581 5.09129 5.15099 5.22457 5.29207 5.33995 5.44881
5.48760 5.54740 5.61319 5.65301 5.73803 5.85823 5.98045 6.03410
6.09664 6.14952 6.18968 6.23250 6.28625 6.39058 6.51851 6.58571
6.66572 6.71375 6.98467 7.58916 7.73513 7.77717 8.26933 8.29858
9.39057 9.91462 10.26160 11.31715
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.012823 B = 0.002819 C = 0.002430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2183.117476 B = 9929.760808 C =11518.842943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.100 3.900
3 H 0.082 0.918
4 C 0.173 3.827
5 H 0.080 0.920
6 N -0.708 5.708
7 C -0.249 4.249
8 H 0.073 0.927
9 C -0.007 4.007
10 N -0.928 5.928
11 Si 0.908 3.092
12 H -0.289 1.289
13 H -0.292 1.292
14 H -0.281 1.281
15 C -0.160 4.160
16 C 0.111 3.889
17 N -0.598 5.598
18 C 0.569 3.431
19 O -0.547 6.547
20 C -0.112 4.112
21 C -0.109 4.109
22 C -0.091 4.091
23 C -0.007 4.007
24 C 0.214 3.786
25 N -0.476 5.476
26 C 0.163 3.837
27 O 0.080 5.920
28 N -0.374 5.374
29 C -0.100 4.100
30 C -0.063 4.063
31 H 0.097 0.903
32 H 0.066 0.934
33 H 0.058 0.942
34 H 0.388 0.612
35 H 0.257 0.743
36 H 0.089 0.911
37 H 0.063 0.937
38 H 0.070 0.930
39 H 0.071 0.929
40 H 0.179 0.821
41 H 0.140 0.860
42 H 0.265 0.735
43 H 0.134 0.866
44 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.499 17.780 -11.526 21.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C -0.005 4.005
3 H 0.099 0.901
4 C 0.060 3.940
5 H 0.098 0.902
6 N -0.349 5.349
7 C -0.380 4.380
8 H 0.091 0.909
9 C -0.204 4.204
10 N -0.576 5.576
11 Si 0.739 3.261
12 H -0.216 1.216
13 H -0.218 1.218
14 H -0.207 1.207
15 C -0.201 4.201
16 C -0.010 4.010
17 N -0.330 5.330
18 C 0.359 3.641
19 O -0.426 6.426
20 C -0.116 4.116
21 C -0.126 4.126
22 C -0.111 4.111
23 C -0.009 4.009
24 C -0.055 4.055
25 N -0.208 5.208
26 C -0.079 4.079
27 O 0.019 5.981
28 N -0.079 5.079
29 C -0.120 4.120
30 C -0.082 4.082
31 H 0.116 0.884
32 H 0.085 0.915
33 H 0.076 0.924
34 H 0.225 0.775
35 H 0.067 0.933
36 H 0.107 0.893
37 H 0.082 0.918
38 H 0.088 0.912
39 H 0.089 0.911
40 H 0.195 0.805
41 H 0.158 0.842
42 H 0.281 0.719
43 H 0.152 0.848
44 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 0.073 16.806 -12.223 20.781
hybrid contribution -0.701 -0.007 0.865 1.113
sum -0.628 16.799 -11.358 20.288
Atomic orbital electron populations
1.22767 0.93814 1.05770 1.01555 1.22631 0.95587 0.95686 0.86585
0.90105 1.21206 0.88967 0.91913 0.91916 0.90177 1.42563 1.39584
1.47807 1.04951 1.19252 1.15524 1.20207 0.83005 0.90860 1.24760
0.98624 0.99281 0.97741 1.69652 1.24471 1.30428 1.33009 0.86190
0.77754 0.77155 0.85024 1.21627 1.21791 1.20689 1.23551 0.99118
1.02422 0.94993 1.22223 0.94928 0.88270 0.95612 1.48491 1.51304
1.28624 1.04596 1.17844 0.80998 0.83785 0.81493 1.90751 1.51601
1.55212 1.45034 1.20106 1.00160 0.96736 0.94558 1.23052 0.95306
0.92198 1.02054 1.21144 0.97203 0.97661 0.95101 1.17546 0.97048
0.91442 0.94909 1.24046 0.99618 0.97409 0.84444 1.72000 1.12895
1.04373 1.31546 1.30493 0.96960 1.00418 0.79985 1.85307 1.50405
1.30559 1.31791 1.74920 1.09606 1.00995 1.22394 1.21029 0.97987
0.94081 0.98903 1.21143 0.94782 0.96381 0.95851 0.88425 0.91521
0.92365 0.77492 0.93287 0.89293 0.91812 0.91171 0.91054 0.80513
0.84214 0.71910 0.84827 0.84095
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.89 7.53 37.16 0.28 -2.62 16
2 C 0.10 1.50 2.69 -66.93 -0.18 1.32 16
3 H 0.08 1.03 6.22 -51.93 -0.32 0.70 16
4 C 0.17 2.96 3.55 -66.07 -0.23 2.73 16
5 H 0.08 1.32 7.98 -51.93 -0.41 0.91 16
6 N -0.71 -15.60 4.00 -51.63 -0.21 -15.80 16
7 C -0.25 -6.24 9.93 -15.06 -0.15 -6.39 16
8 H 0.07 1.77 7.78 -52.49 -0.41 1.36 16
9 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16
10 N -0.93 -26.37 13.06 55.49 0.72 -25.65 16
11 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16
12 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16
13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16
14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
15 C -0.16 -2.49 6.77 -24.59 -0.17 -2.66 16
16 C 0.11 1.82 6.90 -2.53 -0.02 1.80 16
17 N -0.60 -9.65 3.07 -164.68 -0.50 -10.16 16
18 C 0.57 9.64 7.57 -12.34 -0.09 9.55 16
19 O -0.55 -10.70 16.64 5.31 0.09 -10.61 16
20 C -0.11 -1.62 5.11 -104.93 -0.54 -2.16 16
21 C -0.11 -1.40 6.39 -39.24 -0.25 -1.65 16
22 C -0.09 -1.10 9.68 -39.32 -0.38 -1.49 16
23 C -0.01 -0.09 5.88 -104.82 -0.62 -0.71 16
24 C 0.21 2.55 7.79 -156.13 -1.22 1.33 16
25 N -0.48 -4.85 11.24 -13.74 -0.15 -5.01 16
26 C 0.16 0.96 13.39 52.05 0.70 1.66 16
27 O 0.08 0.67 11.29 18.01 0.20 0.87 16
28 N -0.37 -4.25 11.84 30.95 0.37 -3.89 16
29 C -0.10 -1.22 9.67 -39.32 -0.38 -1.60 16
30 C -0.06 -0.83 9.58 -39.24 -0.38 -1.21 16
31 H 0.10 1.94 5.26 -51.93 -0.27 1.67 16
32 H 0.07 0.97 7.93 -51.92 -0.41 0.56 16
33 H 0.06 0.90 4.79 -51.93 -0.25 0.66 16
34 H 0.39 9.36 6.22 -40.82 -0.25 9.10 16
35 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16
36 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16
37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
38 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16
39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
40 H 0.18 2.18 2.16 -53.27 -0.12 2.07 16
41 H 0.14 1.53 7.86 -52.48 -0.41 1.12 16
42 H 0.27 -0.08 8.06 -52.49 -0.42 -0.51 16
43 H 0.13 1.45 7.86 -52.48 -0.41 1.04 16
44 H 0.14 1.81 7.69 -52.49 -0.40 1.40 16
LS Contribution 360.50 15.07 5.43 5.43
Total: -1.00 -32.24 360.50 -7.71 -39.95
By element:
Atomic # 1 Polarization: 16.02 SS G_CDS: -4.92 Total: 11.11 kcal
Atomic # 6 Polarization: 1.35 SS G_CDS: -3.72 Total: -2.37 kcal
Atomic # 7 Polarization: -60.72 SS G_CDS: 0.23 Total: -60.50 kcal
Atomic # 8 Polarization: -10.03 SS G_CDS: 0.29 Total: -9.74 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -32.24 -7.71 -39.95 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987373638.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 170.999 kcal
(2) G-P(sol) polarization free energy of solvation -32.243 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal
(6) G-S(sol) free energy of system = (1) + (5) 131.045 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds