Wall clock time and date at job start Sat Apr 11 2020 06:36:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09001 * 109.86949 * 2 1
4 4 C 1.54364 * 110.03260 * 121.06528 * 2 1 3
5 5 H 1.09001 * 110.75732 * 260.02145 * 4 2 1
6 6 N 1.46510 * 110.70350 * 23.30439 * 4 2 1
7 7 C 1.36934 * 119.99769 * 216.96459 * 6 4 2
8 8 H 1.07998 * 120.00596 * 359.97438 * 7 6 4
9 9 C 1.38813 * 119.99694 * 180.02562 * 7 6 4
10 10 N 1.31615 * 120.00058 * 359.97438 * 9 7 6
11 11 Si 1.86797 * 120.00021 * 179.97438 * 9 7 6
12 12 H 1.48504 * 109.47320 * 89.99663 * 11 9 7
13 13 H 1.48502 * 109.47450 * 209.99810 * 11 9 7
14 14 H 1.48508 * 109.47213 * 329.99888 * 11 9 7
15 15 C 1.55155 * 102.92020 * 141.64721 * 4 2 1
16 16 C 1.54905 * 101.61964 * 324.54941 * 15 4 2
17 17 N 1.47016 * 109.87989 * 238.98498 * 2 1 3
18 18 C 1.34779 * 125.64829 * 61.45170 * 17 2 1
19 19 O 1.21564 * 119.99886 * 176.65049 * 18 17 2
20 20 C 1.47816 * 120.00310 * 356.65239 * 18 17 2
21 21 C 1.39653 * 120.02143 * 11.85022 * 20 18 17
22 22 C 1.37733 * 119.96997 * 179.79328 * 21 20 18
23 23 C 1.39437 * 120.02999 * 0.45759 * 22 21 20
24 24 C 1.48399 * 119.97974 * 179.76929 * 23 22 21
25 25 N 1.35223 * 126.41313 * 359.73698 * 24 23 22
26 26 C 1.30966 * 105.58313 * 179.85053 * 25 24 23
27 27 O 1.33681 * 107.12041 * 0.41014 * 26 25 24
28 28 N 1.21287 * 110.02274 * 359.73317 * 27 26 25
29 29 C 1.39441 * 120.04413 * 359.79560 * 23 22 21
30 30 C 1.37728 * 120.02936 * 359.97438 * 29 23 22
31 31 H 1.08996 * 109.46909 * 205.60505 * 1 2 3
32 32 H 1.09008 * 109.46946 * 325.60439 * 1 2 3
33 33 H 1.08995 * 109.47051 * 85.60088 * 1 2 3
34 34 H 0.96996 * 119.99966 * 36.96232 * 6 4 2
35 35 H 0.97005 * 120.00255 * 180.02562 * 10 9 7
36 36 H 1.09000 * 111.00274 * 206.45380 * 15 4 2
37 37 H 1.08997 * 111.00193 * 82.64739 * 15 4 2
38 38 H 1.08995 * 110.36743 * 155.82896 * 16 15 4
39 39 H 1.09005 * 110.36785 * 278.04613 * 16 15 4
40 40 H 1.08001 * 120.01597 * 0.02562 * 21 20 18
41 41 H 1.08004 * 119.98627 * 180.25302 * 22 21 20
42 42 H 1.07999 * 126.44380 * 180.14840 * 26 25 24
43 43 H 1.08005 * 119.98436 * 179.97438 * 29 23 22
44 44 H 1.07999 * 120.01085 * 179.97438 * 30 29 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0588 -0.7483 1.2423
5 1 2.3571 -0.0445 2.0193
6 7 1.0537 -1.6864 1.7486
7 6 0.9117 -1.8754 3.0974
8 1 1.5408 -1.3333 3.7879
9 6 -0.0403 -2.7645 3.5772
10 7 -0.8066 -3.4255 2.7357
11 14 -0.2336 -3.0229 5.4170
12 1 -1.2275 -2.0572 5.9508
13 1 -0.7012 -4.4084 5.6759
14 1 1.0742 -2.8085 6.0872
15 6 3.2918 -1.5107 0.6892
16 6 2.8177 -1.8762 -0.7394
17 7 2.0300 -0.7124 -1.1849
18 6 1.8049 -0.3602 -2.4662
19 8 2.3199 -0.9904 -3.3692
20 6 0.9318 0.7923 -2.7736
21 6 0.5408 1.6639 -1.7548
22 6 -0.2693 2.7399 -2.0431
23 6 -0.7066 2.9538 -3.3497
24 6 -1.5835 4.1106 -3.6582
25 7 -2.0388 5.0301 -2.7774
26 6 -2.7676 5.8603 -3.4807
27 8 -2.7458 5.4287 -4.7457
28 7 -2.0654 4.4283 -4.8314
29 6 -0.3211 2.0812 -4.3667
30 6 0.4928 1.0072 -4.0817
31 1 -0.3633 -0.9267 0.4441
32 1 -0.3633 0.8481 0.5806
33 1 -0.3633 0.0788 -1.0246
34 1 0.4889 -2.1735 1.1285
35 1 -1.4721 -4.0465 3.0709
36 1 3.4921 -2.4073 1.2758
37 1 4.1686 -0.8639 0.6565
38 1 3.6742 -2.0284 -1.3961
39 1 2.1953 -2.7708 -0.7154
40 1 0.8764 1.4964 -0.7421
41 1 -0.5685 3.4164 -1.2562
42 1 -3.2916 6.7280 -3.1080
43 1 -0.6607 2.2475 -5.3783
44 1 0.7909 0.3313 -4.8695
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000987373638.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:57
Heat of formation + Delta-G solvation = 109.473689 kcal
Electronic energy + Delta-G solvation = -29427.365540 eV
Core-core repulsion = 25349.774420 eV
Total energy + Delta-G solvation = -4077.591120 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-46.62912 -42.08661 -39.89518 -38.97255 -36.88013 -35.82597 -34.43628 -33.33191
-33.13844 -32.13426 -30.93497 -30.52597 -27.14865 -26.28139 -25.54019 -25.23103
-24.23947 -23.15222 -22.67145 -21.37258 -20.52891 -19.57144 -19.24702 -19.13702
-18.37189 -17.65371 -17.22528 -16.72837 -16.52107 -16.43729 -15.84017 -15.63240
-15.48618 -15.07400 -14.95451 -14.69660 -14.53351 -14.14188 -13.86394 -13.77538
-13.61328 -13.41969 -12.98798 -12.97852 -12.89102 -12.72560 -12.39744 -12.37262
-12.23890 -12.21731 -12.02186 -11.92872 -11.67963 -11.51141 -11.40768 -11.07748
-10.89284 -10.05621 -9.86555 -9.63063 -8.97491 -7.89899 -5.17812 -0.74030
0.25424 0.37030 1.16453 1.52558 1.53204 1.60882 1.78571 1.92069
2.13514 2.52156 2.59790 2.73312 3.02741 3.29054 3.41333 3.60751
3.80841 3.82576 3.87046 3.94093 4.00097 4.14269 4.23445 4.24035
4.31600 4.41453 4.51121 4.62021 4.69694 4.73144 4.81011 4.88857
4.90015 4.95052 5.03958 5.14654 5.17752 5.20259 5.25335 5.33131
5.37356 5.58171 5.61495 5.64659 6.30534 6.43795 6.98215 7.13559
7.38483 8.10959 8.33717 9.33010
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.012823 B = 0.002819 C = 0.002430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2183.117476 B = 9929.760808 C =11518.842943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.108 3.892
3 H 0.120 0.880
4 C 0.164 3.836
5 H 0.098 0.902
6 N -0.718 5.718
7 C -0.232 4.232
8 H 0.086 0.914
9 C -0.073 4.073
10 N -0.969 5.969
11 Si 0.967 3.033
12 H -0.289 1.289
13 H -0.306 1.306
14 H -0.268 1.268
15 C -0.145 4.145
16 C 0.111 3.889
17 N -0.598 5.598
18 C 0.566 3.434
19 O -0.581 6.581
20 C -0.131 4.131
21 C -0.101 4.101
22 C -0.089 4.089
23 C -0.008 4.008
24 C 0.191 3.809
25 N -0.508 5.508
26 C 0.192 3.808
27 O 0.086 5.914
28 N -0.393 5.393
29 C -0.099 4.099
30 C -0.066 4.066
31 H 0.057 0.943
32 H 0.084 0.916
33 H 0.060 0.940
34 H 0.375 0.625
35 H 0.248 0.752
36 H 0.074 0.926
37 H 0.095 0.905
38 H 0.076 0.924
39 H 0.046 0.954
40 H 0.184 0.816
41 H 0.155 0.845
42 H 0.323 0.677
43 H 0.144 0.856
44 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.369 21.235 -11.031 23.932
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.004 3.996
3 H 0.137 0.863
4 C 0.053 3.947
5 H 0.115 0.885
6 N -0.358 5.358
7 C -0.364 4.364
8 H 0.104 0.896
9 C -0.265 4.265
10 N -0.620 5.620
11 Si 0.797 3.203
12 H -0.217 1.217
13 H -0.233 1.233
14 H -0.193 1.193
15 C -0.186 4.186
16 C -0.011 4.011
17 N -0.329 5.329
18 C 0.357 3.643
19 O -0.463 6.463
20 C -0.134 4.134
21 C -0.118 4.118
22 C -0.108 4.108
23 C -0.010 4.010
24 C -0.078 4.078
25 N -0.240 5.240
26 C -0.047 4.047
27 O 0.023 5.977
28 N -0.099 5.099
29 C -0.119 4.119
30 C -0.085 4.085
31 H 0.076 0.924
32 H 0.102 0.898
33 H 0.079 0.921
34 H 0.210 0.790
35 H 0.056 0.944
36 H 0.093 0.907
37 H 0.114 0.886
38 H 0.094 0.906
39 H 0.064 0.936
40 H 0.200 0.800
41 H 0.172 0.828
42 H 0.338 0.662
43 H 0.162 0.838
44 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 0.257 20.305 -11.705 23.439
hybrid contribution -0.782 -0.889 0.609 1.331
sum -0.525 19.416 -11.096 22.369
Atomic orbital electron populations
1.22664 0.94493 1.04288 1.01604 1.22650 0.94933 0.96950 0.85073
0.86342 1.21498 0.88385 0.91588 0.93215 0.88451 1.42711 1.40587
1.48645 1.03862 1.19677 1.13893 1.18305 0.84526 0.89642 1.25461
0.99531 1.00374 1.01135 1.69815 1.25795 1.31960 1.34439 0.85239
0.77958 0.75985 0.81130 1.21671 1.23303 1.19252 1.23409 0.99412
1.02116 0.93638 1.22163 0.94727 0.87744 0.96484 1.48542 1.51077
1.28450 1.04846 1.18246 0.80758 0.84087 0.81166 1.90722 1.53071
1.56608 1.45929 1.19990 1.01160 0.96745 0.95553 1.23001 0.95190
0.91982 1.01674 1.21272 0.96675 0.97459 0.95416 1.17758 0.96590
0.91603 0.95035 1.24029 1.00555 0.98020 0.85181 1.71977 1.14599
1.05203 1.32183 1.31710 0.94554 1.00075 0.78335 1.85272 1.49732
1.29744 1.32938 1.74920 1.10169 1.02098 1.22684 1.21107 0.97596
0.93635 0.99560 1.21183 0.95008 0.96756 0.95539 0.92429 0.89764
0.92111 0.79035 0.94356 0.90729 0.88622 0.90584 0.93598 0.79965
0.82771 0.66228 0.83814 0.84308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.38 7.53 71.98 0.54 -4.84 16
2 C 0.11 3.05 2.69 45.36 0.12 3.17 16
3 H 0.12 2.58 6.22 -2.39 -0.01 2.56 16
4 C 0.16 5.34 3.55 46.19 0.16 5.50 16
5 H 0.10 2.89 7.98 -2.39 -0.02 2.87 16
6 N -0.72 -31.62 4.00 -317.25 -1.27 -32.89 16
7 C -0.23 -11.50 9.93 84.03 0.83 -10.66 16
8 H 0.09 3.96 7.78 -2.91 -0.02 3.93 16
9 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16
10 N -0.97 -56.80 13.06 21.65 0.28 -56.51 16
11 Si 0.97 43.78 29.55 68.60 2.03 45.80 16
12 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16
13 H -0.31 -14.41 7.11 99.48 0.71 -13.71 16
14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16
15 C -0.15 -4.31 6.77 31.98 0.22 -4.09 16
16 C 0.11 3.62 6.90 86.85 0.60 4.22 16
17 N -0.60 -18.98 3.07 -793.21 -2.43 -21.41 16
18 C 0.57 19.20 7.57 86.78 0.66 19.85 16
19 O -0.58 -23.21 16.64 -3.92 -0.07 -23.27 16
20 C -0.13 -3.73 5.11 -20.06 -0.10 -3.83 16
21 C -0.10 -2.44 6.39 22.49 0.14 -2.29 16
22 C -0.09 -1.98 9.68 22.44 0.22 -1.77 16
23 C -0.01 -0.19 5.88 -19.99 -0.12 -0.30 16
24 C 0.19 4.23 7.79 137.29 1.07 5.30 16
25 N -0.51 -8.99 11.24 -314.71 -3.54 -12.53 16
26 C 0.19 1.56 13.39 130.49 1.75 3.31 16
27 O 0.09 1.20 11.29 74.50 0.84 2.04 16
28 N -0.39 -8.29 11.84 -59.21 -0.70 -8.99 16
29 C -0.10 -2.36 9.67 22.44 0.22 -2.14 16
30 C -0.07 -1.75 9.58 22.49 0.22 -1.54 16
31 H 0.06 2.33 5.26 -2.39 -0.01 2.31 16
32 H 0.08 2.29 7.93 -2.38 -0.02 2.27 16
33 H 0.06 1.86 4.79 -2.39 -0.01 1.85 16
34 H 0.38 18.63 6.22 -92.71 -0.58 18.05 16
35 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16
36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16
37 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16
38 H 0.08 2.39 8.00 -2.39 -0.02 2.37 16
39 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16
40 H 0.18 4.03 2.16 -3.65 -0.01 4.02 16
41 H 0.15 2.99 7.86 -2.91 -0.02 2.97 16
42 H 0.32 -2.02 8.06 -2.91 -0.02 -2.04 16
43 H 0.14 3.06 7.86 -2.91 -0.02 3.04 16
44 H 0.14 3.66 7.69 -2.91 -0.02 3.64 16
Total: -1.00 -72.72 360.50 2.63 -70.09
By element:
Atomic # 1 Polarization: 30.72 SS G_CDS: 0.50 Total: 31.22 kcal
Atomic # 6 Polarization: -0.54 SS G_CDS: 6.99 Total: 6.45 kcal
Atomic # 7 Polarization: -124.67 SS G_CDS: -7.66 Total: -132.33 kcal
Atomic # 8 Polarization: -22.01 SS G_CDS: 0.78 Total: -21.23 kcal
Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal
Total: -72.72 2.63 -70.09 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987373638.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 179.561 kcal
(2) G-P(sol) polarization free energy of solvation -72.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.840 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) 109.474 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds