Wall clock time and date at job start Sat Apr 11 2020 06:37:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08997 * 109.99866 * 2 1
4 4 C 1.54314 * 109.77540 * 121.15672 * 2 1 3
5 5 H 1.09002 * 110.92284 * 23.47404 * 4 2 1
6 6 N 1.46495 * 110.59319 * 260.14687 * 4 2 1
7 7 C 1.36929 * 120.00387 * 160.19613 * 6 4 2
8 8 H 1.08004 * 120.00003 * 359.97438 * 7 6 4
9 9 C 1.38813 * 120.00532 * 180.02562 * 7 6 4
10 10 N 1.31622 * 119.99594 * 359.97438 * 9 7 6
11 11 Si 1.86793 * 120.00529 * 180.02562 * 9 7 6
12 12 H 1.48497 * 109.47360 * 89.99391 * 11 9 7
13 13 H 1.48498 * 109.47207 * 210.00034 * 11 9 7
14 14 H 1.48502 * 109.47039 * 329.99471 * 11 9 7
15 15 C 1.55155 * 102.86028 * 141.88177 * 4 2 1
16 16 C 1.54904 * 101.58728 * 324.30312 * 15 4 2
17 17 N 1.47023 * 109.88018 * 238.90852 * 2 1 3
18 18 C 1.34774 * 125.65207 * 61.67518 * 17 2 1
19 19 O 1.21558 * 119.99900 * 5.48083 * 18 17 2
20 20 C 1.47820 * 120.00027 * 185.48066 * 18 17 2
21 21 C 1.39659 * 120.02212 * 204.59285 * 20 18 17
22 22 C 1.37733 * 119.96850 * 179.97438 * 21 20 18
23 23 C 1.39428 * 120.02746 * 0.02562 * 22 21 20
24 24 C 1.48409 * 119.97122 * 179.97438 * 23 22 21
25 25 N 1.35228 * 126.41245 * 180.02562 * 24 23 22
26 26 C 1.30963 * 105.57922 * 180.02562 * 25 24 23
27 27 O 1.33676 * 107.12404 * 359.97438 * 26 25 24
28 28 N 1.21291 * 110.02925 * 359.97438 * 27 26 25
29 29 C 1.39434 * 120.05646 * 0.25977 * 23 22 21
30 30 C 1.37735 * 120.01984 * 359.44013 * 29 23 22
31 31 H 1.09004 * 109.47427 * 179.64254 * 1 2 3
32 32 H 1.09004 * 109.47436 * 299.63921 * 1 2 3
33 33 H 1.09004 * 109.47386 * 59.63725 * 1 2 3
34 34 H 0.97009 * 119.99364 * 340.18931 * 6 4 2
35 35 H 0.97002 * 120.00197 * 180.02562 * 10 9 7
36 36 H 1.09008 * 111.00160 * 206.22492 * 15 4 2
37 37 H 1.09005 * 111.03627 * 82.40032 * 15 4 2
38 38 H 1.09000 * 110.36713 * 278.17519 * 16 15 4
39 39 H 1.08998 * 110.36514 * 155.84231 * 16 15 4
40 40 H 1.07991 * 120.01356 * 359.95393 * 21 20 18
41 41 H 1.07996 * 119.98092 * 179.97438 * 22 21 20
42 42 H 1.08003 * 126.43803 * 179.73388 * 26 25 24
43 43 H 1.07994 * 119.99187 * 179.70561 * 29 23 22
44 44 H 1.08004 * 120.01141 * 180.25612 * 30 29 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9027 1.0243 0.0000
4 6 2.0521 -0.7513 1.2427
5 1 1.3050 -1.4514 1.6167
6 7 2.4472 0.1951 2.2887
7 6 2.5496 -0.2240 3.5882
8 1 2.3386 -1.2524 3.8422
9 6 2.9235 0.6729 4.5795
10 7 3.1802 1.9262 4.2702
11 14 3.0639 0.1009 6.3522
12 1 4.4459 -0.3774 6.6101
13 1 2.7532 1.2316 7.2633
14 1 2.1040 -1.0064 6.5925
15 6 3.2888 -1.5102 0.6931
16 6 2.8190 -1.8763 -0.7368
17 7 2.0299 -0.7140 -1.1840
18 6 1.8084 -0.3612 -2.4657
19 8 1.2297 0.6774 -2.7189
20 6 2.2692 -1.2372 -3.5637
21 6 2.5210 -0.6995 -4.8278
22 6 2.9508 -1.5166 -5.8498
23 6 3.1341 -2.8800 -5.6229
24 6 3.5968 -3.7594 -6.7253
25 7 3.8161 -5.0917 -6.6511
26 6 4.2115 -5.4503 -7.8470
27 8 4.2222 -4.3490 -8.6046
28 7 3.8679 -3.3911 -7.9503
29 6 2.8774 -3.4190 -4.3629
30 6 2.4534 -2.6028 -3.3376
31 1 -0.3634 -1.0277 -0.0064
32 1 -0.3634 0.5082 0.8932
33 1 -0.3634 0.5195 -0.8867
34 1 2.6365 1.1188 2.0606
35 1 3.4418 2.5529 4.9627
36 1 3.4896 -2.4066 1.2800
37 1 4.1643 -0.8614 0.6628
38 1 2.1970 -2.7711 -0.7143
39 1 3.6776 -2.0263 -1.3914
40 1 2.3783 0.3564 -5.0039
41 1 3.1451 -1.1011 -6.8275
42 1 4.4821 -6.4476 -8.1610
43 1 3.0152 -4.4760 -4.1896
44 1 2.2586 -3.0198 -2.3605
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000987373640.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:04
Heat of formation + Delta-G solvation = 92.475824 kcal
Electronic energy + Delta-G solvation = -28586.749546 eV
Core-core repulsion = 24508.421343 eV
Total energy + Delta-G solvation = -4078.328203 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-46.04217 -40.59559 -39.00366 -37.40768 -36.21749 -34.27134 -33.36247 -32.04610
-31.37447 -31.09211 -30.59591 -29.04618 -25.69310 -25.37505 -24.71167 -23.41073
-23.14401 -22.36694 -21.78123 -20.31563 -19.33510 -18.78158 -18.54030 -17.34017
-17.20188 -16.64631 -16.18688 -15.96585 -15.51469 -14.75691 -14.71201 -14.44508
-14.01938 -13.84575 -13.66976 -13.43953 -13.39099 -13.18579 -12.97697 -12.79472
-12.35839 -12.29667 -12.12731 -11.91627 -11.79679 -11.59820 -11.29009 -11.15574
-11.04783 -10.94173 -10.83727 -10.59535 -10.29620 -10.06775 -9.83588 -9.71085
-9.34749 -9.04816 -8.96920 -8.47192 -7.06207 -5.83969 -3.14720 0.08470
0.86095 1.03449 1.88422 2.51335 2.83383 3.00636 3.08327 3.39358
3.44685 3.46584 3.56599 3.59195 4.35036 4.50454 4.52387 4.58271
4.61185 4.90514 5.00478 5.03857 5.14289 5.19106 5.27117 5.31791
5.41451 5.46102 5.51795 5.61143 5.68068 5.73995 5.85993 5.93806
6.00128 6.03199 6.06639 6.09286 6.25399 6.40381 6.43258 6.53504
6.56905 6.67821 6.88377 7.62781 7.64652 7.64980 8.21238 8.33140
9.44665 9.98776 10.33413 11.38082
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.023452 B = 0.002058 C = 0.001954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.617324 B =13604.555258 C =14326.635004
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.127 3.873
3 H 0.080 0.920
4 C 0.177 3.823
5 H 0.066 0.934
6 N -0.715 5.715
7 C -0.244 4.244
8 H 0.072 0.928
9 C -0.010 4.010
10 N -0.929 5.929
11 Si 0.909 3.091
12 H -0.289 1.289
13 H -0.291 1.291
14 H -0.281 1.281
15 C -0.157 4.157
16 C 0.092 3.908
17 N -0.601 5.601
18 C 0.567 3.433
19 O -0.535 6.535
20 C -0.101 4.101
21 C -0.066 4.066
22 C -0.091 4.091
23 C -0.011 4.011
24 C 0.213 3.787
25 N -0.478 5.478
26 C 0.164 3.836
27 O 0.082 5.918
28 N -0.372 5.372
29 C -0.081 4.081
30 C -0.100 4.100
31 H 0.051 0.949
32 H 0.072 0.928
33 H 0.059 0.941
34 H 0.386 0.614
35 H 0.257 0.743
36 H 0.078 0.922
37 H 0.076 0.924
38 H 0.070 0.930
39 H 0.074 0.926
40 H 0.143 0.857
41 H 0.136 0.864
42 H 0.266 0.734
43 H 0.141 0.859
44 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.205 -16.060 -24.251 29.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.024 3.976
3 H 0.098 0.902
4 C 0.065 3.935
5 H 0.084 0.916
6 N -0.355 5.355
7 C -0.375 4.375
8 H 0.090 0.910
9 C -0.207 4.207
10 N -0.577 5.577
11 Si 0.740 3.260
12 H -0.217 1.217
13 H -0.218 1.218
14 H -0.207 1.207
15 C -0.199 4.199
16 C -0.031 4.031
17 N -0.334 5.334
18 C 0.356 3.644
19 O -0.413 6.413
20 C -0.105 4.105
21 C -0.084 4.084
22 C -0.110 4.110
23 C -0.013 4.013
24 C -0.057 4.057
25 N -0.210 5.210
26 C -0.077 4.077
27 O 0.021 5.979
28 N -0.077 5.077
29 C -0.101 4.101
30 C -0.118 4.118
31 H 0.070 0.930
32 H 0.091 0.909
33 H 0.078 0.922
34 H 0.221 0.779
35 H 0.066 0.934
36 H 0.096 0.904
37 H 0.095 0.905
38 H 0.087 0.913
39 H 0.093 0.907
40 H 0.160 0.840
41 H 0.154 0.846
42 H 0.281 0.719
43 H 0.159 0.841
44 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 0.689 -14.776 -24.117 28.293
hybrid contribution 0.422 -0.432 0.729 0.946
sum 1.110 -15.208 -23.389 27.921
Atomic orbital electron populations
1.22047 0.94731 1.01687 1.02783 1.21950 0.94461 0.97105 0.84131
0.90159 1.21248 0.93522 0.91644 0.87077 0.91597 1.42348 1.81130
1.08937 1.03086 1.19186 1.39495 0.95029 0.83779 0.90972 1.24779
1.02091 0.95624 0.98202 1.69667 1.52535 1.02870 1.32592 0.86173
0.77741 0.77374 0.84758 1.21665 1.21753 1.20687 1.23625 1.01547
1.01911 0.92777 1.22706 0.94568 0.88288 0.97522 1.48460 1.51386
1.28755 1.04803 1.17870 0.79912 0.85252 0.81389 1.90780 1.42859
1.24383 1.83272 1.20189 1.01515 0.94167 0.94587 1.21174 0.95665
1.00884 0.90723 1.21090 0.98442 0.91649 0.99862 1.17503 1.02172
0.91390 0.90267 1.24018 1.00835 0.88794 0.92040 1.71989 1.17594
1.09757 1.21654 1.30494 0.95975 0.96269 0.84946 1.85315 1.60944
1.13501 1.38187 1.74936 1.17342 1.09382 1.06054 1.21123 0.97457
1.00728 0.90818 1.21863 0.97171 0.92522 1.00285 0.92972 0.90895
0.92156 0.77940 0.93351 0.90375 0.90487 0.91253 0.90733 0.83958
0.84613 0.71870 0.84134 0.83312
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.52 9.10 37.16 0.34 -2.18 16
2 C 0.13 2.20 3.18 -66.96 -0.21 1.99 16
3 H 0.08 1.58 7.68 -51.93 -0.40 1.19 16
4 C 0.18 3.27 3.11 -66.10 -0.21 3.07 16
5 H 0.07 1.21 7.84 -51.93 -0.41 0.80 16
6 N -0.71 -17.00 5.25 -51.66 -0.27 -17.27 16
7 C -0.24 -6.43 9.98 -15.06 -0.15 -6.58 16
8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16
9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16
10 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16
11 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16
12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
15 C -0.16 -2.47 6.76 -24.59 -0.17 -2.64 16
16 C 0.09 1.15 4.99 -2.53 -0.01 1.14 16
17 N -0.60 -9.12 3.06 -164.13 -0.50 -9.63 16
18 C 0.57 8.91 7.39 -12.34 -0.09 8.82 16
19 O -0.53 -10.09 15.85 5.31 0.08 -10.01 16
20 C -0.10 -1.28 5.67 -104.92 -0.60 -1.87 16
21 C -0.07 -0.76 9.58 -39.24 -0.38 -1.14 16
22 C -0.09 -0.95 9.67 -39.32 -0.38 -1.33 16
23 C -0.01 -0.12 5.88 -104.82 -0.62 -0.74 16
24 C 0.21 2.16 7.80 -156.12 -1.22 0.95 16
25 N -0.48 -4.03 11.24 -13.74 -0.15 -4.19 16
26 C 0.16 0.73 13.39 52.05 0.70 1.42 16
27 O 0.08 0.57 11.29 18.02 0.20 0.77 16
28 N -0.37 -3.69 11.84 30.95 0.37 -3.32 16
29 C -0.08 -0.79 9.68 -39.32 -0.38 -1.18 16
30 C -0.10 -1.04 8.06 -39.24 -0.32 -1.36 16
31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
33 H 0.06 1.02 7.07 -51.93 -0.37 0.65 16
34 H 0.39 9.98 7.50 -40.82 -0.31 9.68 16
35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
36 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16
37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
38 H 0.07 0.71 6.82 -51.93 -0.35 0.36 16
39 H 0.07 0.83 6.83 -51.93 -0.35 0.47 16
40 H 0.14 1.62 7.83 -52.49 -0.41 1.21 16
41 H 0.14 1.27 7.86 -52.49 -0.41 0.85 16
42 H 0.27 -0.47 8.06 -52.48 -0.42 -0.89 16
43 H 0.14 1.18 7.86 -52.49 -0.41 0.76 16
44 H 0.15 1.35 4.59 -52.48 -0.24 1.11 16
LS Contribution 370.87 15.07 5.59 5.59
Total: -1.00 -33.80 370.87 -8.09 -41.89
By element:
Atomic # 1 Polarization: 13.46 SS G_CDS: -5.32 Total: 8.14 kcal
Atomic # 6 Polarization: 1.78 SS G_CDS: -3.78 Total: -2.00 kcal
Atomic # 7 Polarization: -61.24 SS G_CDS: 0.16 Total: -61.08 kcal
Atomic # 8 Polarization: -9.53 SS G_CDS: 0.29 Total: -9.24 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -33.80 -8.09 -41.89 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987373640.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.366 kcal
(2) G-P(sol) polarization free energy of solvation -33.800 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.567 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.476 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds