Wall clock time and date at job start Sat Apr 11 2020 06:37:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08997 * 109.99866 * 2 1
4 4 C 1.54314 * 109.77540 * 121.15672 * 2 1 3
5 5 H 1.09002 * 110.92284 * 23.47404 * 4 2 1
6 6 N 1.46495 * 110.59319 * 260.14687 * 4 2 1
7 7 C 1.36929 * 120.00387 * 160.19613 * 6 4 2
8 8 H 1.08004 * 120.00003 * 359.97438 * 7 6 4
9 9 C 1.38813 * 120.00532 * 180.02562 * 7 6 4
10 10 N 1.31622 * 119.99594 * 359.97438 * 9 7 6
11 11 Si 1.86793 * 120.00529 * 180.02562 * 9 7 6
12 12 H 1.48497 * 109.47360 * 89.99391 * 11 9 7
13 13 H 1.48498 * 109.47207 * 210.00034 * 11 9 7
14 14 H 1.48502 * 109.47039 * 329.99471 * 11 9 7
15 15 C 1.55155 * 102.86028 * 141.88177 * 4 2 1
16 16 C 1.54904 * 101.58728 * 324.30312 * 15 4 2
17 17 N 1.47023 * 109.88018 * 238.90852 * 2 1 3
18 18 C 1.34774 * 125.65207 * 61.67518 * 17 2 1
19 19 O 1.21558 * 119.99900 * 5.48083 * 18 17 2
20 20 C 1.47820 * 120.00027 * 185.48066 * 18 17 2
21 21 C 1.39659 * 120.02212 * 204.59285 * 20 18 17
22 22 C 1.37733 * 119.96850 * 179.97438 * 21 20 18
23 23 C 1.39428 * 120.02746 * 0.02562 * 22 21 20
24 24 C 1.48409 * 119.97122 * 179.97438 * 23 22 21
25 25 N 1.35228 * 126.41245 * 180.02562 * 24 23 22
26 26 C 1.30963 * 105.57922 * 180.02562 * 25 24 23
27 27 O 1.33676 * 107.12404 * 359.97438 * 26 25 24
28 28 N 1.21291 * 110.02925 * 359.97438 * 27 26 25
29 29 C 1.39434 * 120.05646 * 0.25977 * 23 22 21
30 30 C 1.37735 * 120.01984 * 359.44013 * 29 23 22
31 31 H 1.09004 * 109.47427 * 179.64254 * 1 2 3
32 32 H 1.09004 * 109.47436 * 299.63921 * 1 2 3
33 33 H 1.09004 * 109.47386 * 59.63725 * 1 2 3
34 34 H 0.97009 * 119.99364 * 340.18931 * 6 4 2
35 35 H 0.97002 * 120.00197 * 180.02562 * 10 9 7
36 36 H 1.09008 * 111.00160 * 206.22492 * 15 4 2
37 37 H 1.09005 * 111.03627 * 82.40032 * 15 4 2
38 38 H 1.09000 * 110.36713 * 278.17519 * 16 15 4
39 39 H 1.08998 * 110.36514 * 155.84231 * 16 15 4
40 40 H 1.07991 * 120.01356 * 359.95393 * 21 20 18
41 41 H 1.07996 * 119.98092 * 179.97438 * 22 21 20
42 42 H 1.08003 * 126.43803 * 179.73388 * 26 25 24
43 43 H 1.07994 * 119.99187 * 179.70561 * 29 23 22
44 44 H 1.08004 * 120.01141 * 180.25612 * 30 29 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9027 1.0243 0.0000
4 6 2.0521 -0.7513 1.2427
5 1 1.3050 -1.4514 1.6167
6 7 2.4472 0.1951 2.2887
7 6 2.5496 -0.2240 3.5882
8 1 2.3386 -1.2524 3.8422
9 6 2.9235 0.6729 4.5795
10 7 3.1802 1.9262 4.2702
11 14 3.0639 0.1009 6.3522
12 1 4.4459 -0.3774 6.6101
13 1 2.7532 1.2316 7.2633
14 1 2.1040 -1.0064 6.5925
15 6 3.2888 -1.5102 0.6931
16 6 2.8190 -1.8763 -0.7368
17 7 2.0299 -0.7140 -1.1840
18 6 1.8084 -0.3612 -2.4657
19 8 1.2297 0.6774 -2.7189
20 6 2.2692 -1.2372 -3.5637
21 6 2.5210 -0.6995 -4.8278
22 6 2.9508 -1.5166 -5.8498
23 6 3.1341 -2.8800 -5.6229
24 6 3.5968 -3.7594 -6.7253
25 7 3.8161 -5.0917 -6.6511
26 6 4.2115 -5.4503 -7.8470
27 8 4.2222 -4.3490 -8.6046
28 7 3.8679 -3.3911 -7.9503
29 6 2.8774 -3.4190 -4.3629
30 6 2.4534 -2.6028 -3.3376
31 1 -0.3634 -1.0277 -0.0064
32 1 -0.3634 0.5082 0.8932
33 1 -0.3634 0.5195 -0.8867
34 1 2.6365 1.1188 2.0606
35 1 3.4418 2.5529 4.9627
36 1 3.4896 -2.4066 1.2800
37 1 4.1643 -0.8614 0.6628
38 1 2.1970 -2.7711 -0.7143
39 1 3.6776 -2.0263 -1.3914
40 1 2.3783 0.3564 -5.0039
41 1 3.1451 -1.1011 -6.8275
42 1 4.4821 -6.4476 -8.1610
43 1 3.0152 -4.4760 -4.1896
44 1 2.2586 -3.0198 -2.3605
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000987373640.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:03
Heat of formation + Delta-G solvation = 68.978578 kcal
Electronic energy + Delta-G solvation = -28587.768463 eV
Core-core repulsion = 24508.421343 eV
Total energy + Delta-G solvation = -4079.347120 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-46.62015 -41.73032 -40.00692 -38.72450 -36.83577 -35.98049 -34.18164 -33.39912
-32.48072 -32.20207 -31.71424 -30.54412 -26.96057 -26.52723 -25.36828 -24.95298
-24.18168 -23.30710 -22.66481 -21.68010 -20.58835 -19.38574 -19.14442 -19.12674
-18.37113 -17.59633 -17.35425 -16.76886 -16.48684 -16.39215 -15.72064 -15.47102
-15.38960 -15.22198 -14.85369 -14.62681 -14.57920 -14.18805 -14.14502 -13.74196
-13.61710 -13.33731 -13.24772 -13.07741 -12.90124 -12.84350 -12.67993 -12.54293
-12.34148 -12.14661 -12.11477 -11.95916 -11.67176 -11.61859 -11.50474 -11.07406
-10.88940 -10.15703 -9.92845 -9.67990 -9.01795 -7.92834 -5.22890 -0.72824
0.22570 0.38009 1.17434 1.50343 1.51742 1.60006 1.75133 1.85413
2.14136 2.52545 2.58279 2.69265 3.03000 3.29138 3.41835 3.63202
3.75656 3.82215 3.82898 3.97998 4.02204 4.14154 4.18283 4.28299
4.34666 4.38612 4.46963 4.59035 4.65154 4.67861 4.71356 4.85814
4.88983 4.93210 5.02593 5.13003 5.16475 5.20397 5.23217 5.25242
5.34143 5.45492 5.56454 5.62769 6.27089 6.44425 6.99027 7.14151
7.33612 8.05692 8.29222 9.30699
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.023452 B = 0.002058 C = 0.001954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.617324 B =13604.555258 C =14326.635004
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.132 3.868
3 H 0.045 0.955
4 C 0.172 3.828
5 H 0.077 0.923
6 N -0.730 5.730
7 C -0.233 4.233
8 H 0.086 0.914
9 C -0.079 4.079
10 N -0.972 5.972
11 Si 0.974 3.026
12 H -0.288 1.288
13 H -0.302 1.302
14 H -0.265 1.265
15 C -0.149 4.149
16 C 0.097 3.903
17 N -0.601 5.601
18 C 0.565 3.435
19 O -0.578 6.578
20 C -0.119 4.119
21 C -0.071 4.071
22 C -0.092 4.092
23 C -0.012 4.012
24 C 0.191 3.809
25 N -0.506 5.506
26 C 0.193 3.807
27 O 0.084 5.916
28 N -0.395 5.395
29 C -0.075 4.075
30 C -0.088 4.088
31 H 0.074 0.926
32 H 0.060 0.940
33 H 0.049 0.951
34 H 0.370 0.630
35 H 0.249 0.751
36 H 0.095 0.905
37 H 0.053 0.947
38 H 0.108 0.892
39 H 0.096 0.904
40 H 0.135 0.865
41 H 0.142 0.858
42 H 0.323 0.677
43 H 0.160 0.840
44 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.620 -20.499 -25.550 32.797
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.028 3.972
3 H 0.063 0.937
4 C 0.062 3.938
5 H 0.095 0.905
6 N -0.369 5.369
7 C -0.365 4.365
8 H 0.104 0.896
9 C -0.271 4.271
10 N -0.623 5.623
11 Si 0.803 3.197
12 H -0.215 1.215
13 H -0.229 1.229
14 H -0.190 1.190
15 C -0.190 4.190
16 C -0.024 4.024
17 N -0.333 5.333
18 C 0.356 3.644
19 O -0.459 6.459
20 C -0.123 4.123
21 C -0.090 4.090
22 C -0.112 4.112
23 C -0.014 4.014
24 C -0.078 4.078
25 N -0.238 5.238
26 C -0.046 4.046
27 O 0.022 5.978
28 N -0.100 5.100
29 C -0.095 4.095
30 C -0.106 4.106
31 H 0.093 0.907
32 H 0.079 0.921
33 H 0.068 0.932
34 H 0.202 0.798
35 H 0.058 0.942
36 H 0.114 0.886
37 H 0.071 0.929
38 H 0.126 0.874
39 H 0.114 0.886
40 H 0.153 0.847
41 H 0.160 0.840
42 H 0.337 0.663
43 H 0.178 0.822
44 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges 1.100 -19.299 -25.437 31.948
hybrid contribution 0.324 0.810 0.917 1.266
sum 1.424 -18.488 -24.520 30.742
Atomic orbital electron populations
1.21941 0.93910 1.02736 1.01671 1.21669 0.95039 0.95533 0.84963
0.93673 1.21454 0.95046 0.91088 0.86211 0.90545 1.42538 1.81506
1.09147 1.03710 1.19623 1.36832 0.95302 0.84713 0.89619 1.25602
1.03377 0.95861 1.02255 1.69841 1.55011 1.04143 1.33295 0.85128
0.77838 0.76805 0.79907 1.21502 1.22918 1.18958 1.23443 0.98987
1.01559 0.95024 1.22913 0.95697 0.88280 0.95501 1.48473 1.51457
1.29253 1.04121 1.18368 0.79094 0.85038 0.81900 1.90753 1.44837
1.26402 1.83883 1.19982 1.03800 0.94816 0.93677 1.21164 0.96059
1.00862 0.90943 1.21115 0.98406 0.91867 0.99766 1.17732 1.01185
0.91435 0.91040 1.24045 1.01978 0.89668 0.92098 1.71968 1.19295
1.08874 1.23652 1.31706 0.92560 0.97070 0.83306 1.85279 1.60632
1.13877 1.38034 1.74940 1.17955 1.10897 1.06248 1.21296 0.96595
1.01466 0.90131 1.21970 0.96136 0.91236 1.01245 0.90730 0.92054
0.93190 0.79793 0.94207 0.88626 0.92850 0.87414 0.88555 0.84697
0.83987 0.66286 0.82224 0.81484
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.74 9.10 71.98 0.66 -4.08 16
2 C 0.13 4.65 3.18 45.34 0.14 4.80 16
3 H 0.05 1.90 7.68 -2.39 -0.02 1.88 16
4 C 0.17 6.24 3.11 46.18 0.14 6.38 16
5 H 0.08 2.65 7.84 -2.39 -0.02 2.63 16
6 N -0.73 -35.31 5.25 -317.36 -1.67 -36.98 16
7 C -0.23 -12.25 9.98 84.04 0.84 -11.41 16
8 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16
9 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16
10 N -0.97 -59.23 13.06 21.65 0.28 -58.95 16
11 Si 0.97 44.98 29.55 68.60 2.03 47.01 16
12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16
13 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16
14 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16
15 C -0.15 -4.42 6.76 31.98 0.22 -4.21 16
16 C 0.10 2.16 4.99 86.85 0.43 2.59 16
17 N -0.60 -17.75 3.06 -791.47 -2.43 -20.18 16
18 C 0.57 17.78 7.39 86.78 0.64 18.42 16
19 O -0.58 -22.69 15.85 -3.90 -0.06 -22.75 16
20 C -0.12 -2.91 5.67 -20.06 -0.11 -3.02 16
21 C -0.07 -1.67 9.58 22.49 0.22 -1.45 16
22 C -0.09 -1.87 9.67 22.44 0.22 -1.65 16
23 C -0.01 -0.23 5.88 -19.99 -0.12 -0.35 16
24 C 0.19 3.53 7.80 137.29 1.07 4.60 16
25 N -0.51 -7.01 11.24 -314.72 -3.54 -10.55 16
26 C 0.19 0.96 13.39 130.49 1.75 2.71 16
27 O 0.08 0.95 11.29 74.55 0.84 1.79 16
28 N -0.39 -7.19 11.84 -59.20 -0.70 -7.89 16
29 C -0.08 -1.26 9.68 22.44 0.22 -1.04 16
30 C -0.09 -1.59 8.06 22.49 0.18 -1.41 16
31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
33 H 0.05 1.73 7.07 -2.39 -0.02 1.72 16
34 H 0.37 20.05 7.50 -92.70 -0.70 19.35 16
35 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16
36 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16
37 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16
38 H 0.11 1.66 6.82 -2.39 -0.02 1.64 16
39 H 0.10 1.80 6.83 -2.39 -0.02 1.78 16
40 H 0.14 3.25 7.83 -2.92 -0.02 3.23 16
41 H 0.14 2.64 7.86 -2.91 -0.02 2.61 16
42 H 0.32 -2.95 8.06 -2.91 -0.02 -2.98 16
43 H 0.16 2.08 7.86 -2.91 -0.02 2.06 16
44 H 0.17 2.30 4.59 -2.91 -0.01 2.29 16
Total: -1.00 -77.39 370.87 2.08 -75.32
By element:
Atomic # 1 Polarization: 25.89 SS G_CDS: 0.36 Total: 26.26 kcal
Atomic # 6 Polarization: -0.04 SS G_CDS: 6.96 Total: 6.92 kcal
Atomic # 7 Polarization: -126.49 SS G_CDS: -8.05 Total: -134.54 kcal
Atomic # 8 Polarization: -21.74 SS G_CDS: 0.78 Total: -20.96 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal
Total: -77.39 2.08 -75.32 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987373640.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.294 kcal
(2) G-P(sol) polarization free energy of solvation -77.392 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.901 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds