Wall clock time and date at job start Sat Apr 11 2020 06:35:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86803 * 119.99997 * 2 1
4 4 H 1.48501 * 109.47139 * 270.00000 * 3 2 1
5 5 H 1.48502 * 109.47166 * 30.00155 * 3 2 1
6 6 H 1.48497 * 109.46720 * 149.99962 * 3 2 1
7 7 C 1.37873 * 119.99893 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00336 * 359.97438 * 7 2 1
9 9 C 1.50698 * 120.00005 * 180.02562 * 7 2 1
10 10 N 1.46905 * 109.47114 * 175.52735 * 9 7 2
11 11 C 1.46900 * 110.99954 * 295.65353 * 10 9 7
12 12 C 1.53246 * 109.33786 * 187.25224 * 11 10 9
13 13 N 1.47082 * 108.52224 * 306.17334 * 12 11 10
14 14 C 1.34776 * 120.87920 * 231.19123 * 13 12 11
15 15 O 1.21574 * 120.00002 * 355.56645 * 14 13 12
16 16 C 1.47629 * 119.99800 * 175.85185 * 14 13 12
17 17 C 1.39622 * 120.19128 * 57.45701 * 16 14 13
18 18 C 1.37871 * 119.91703 * 179.78900 * 17 16 14
19 19 C 1.38496 * 120.29930 * 0.48882 * 18 17 16
20 20 C 1.38112 * 120.38007 * 359.74168 * 19 18 17
21 21 C 1.38707 * 120.08005 * 0.02562 * 20 19 18
22 22 N 1.39844 * 120.15108 * 180.02562 * 21 20 19
23 23 C 1.35152 * 127.39766 * 6.51286 * 22 21 20
24 24 N 1.30711 * 107.26452 * 180.02562 * 23 22 21
25 25 N 1.28419 * 110.65668 * 359.97438 * 24 23 22
26 26 N 1.28948 * 110.22035 * 359.70357 * 25 24 23
27 27 C 1.47078 * 118.23851 * 51.45355 * 13 12 11
28 28 C 1.46897 * 110.99750 * 59.95674 * 10 9 7
29 29 H 0.97001 * 119.99633 * 0.02562 * 1 2 3
30 30 H 1.08999 * 109.47002 * 55.53075 * 9 7 2
31 31 H 1.09000 * 109.47371 * 295.53013 * 9 7 2
32 32 H 1.08992 * 109.49210 * 67.29558 * 11 10 9
33 33 H 1.08996 * 109.49659 * 307.21176 * 11 10 9
34 34 H 1.08999 * 109.62457 * 186.45898 * 12 11 10
35 35 H 1.09002 * 109.62623 * 65.87933 * 12 11 10
36 36 H 1.08005 * 120.03941 * 359.97438 * 17 16 14
37 37 H 1.07999 * 119.84812 * 180.23216 * 18 17 16
38 38 H 1.07998 * 119.80840 * 179.71951 * 19 18 17
39 39 H 1.08002 * 119.95995 * 180.02562 * 20 19 18
40 40 H 1.08000 * 126.36436 * 359.97438 * 23 22 21
41 41 H 1.09002 * 109.62907 * 68.25240 * 27 13 12
42 42 H 1.08996 * 109.63014 * 188.83745 * 27 13 12
43 43 H 1.08998 * 109.49359 * 292.70489 * 28 10 9
44 44 H 1.09003 * 109.49618 * 52.78705 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0465 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 0.0000
10 7 4.0011 -2.5750 0.1073
11 6 3.6163 -3.1715 1.3934
12 6 4.2948 -4.5375 1.5424
13 7 3.9741 -5.3500 0.3591
14 6 3.4820 -6.5980 0.4896
15 8 3.3732 -7.0962 1.5932
16 6 3.0810 -7.3622 -0.7081
17 6 4.0035 -7.6045 -1.7278
18 6 3.6241 -8.3227 -2.8419
19 6 2.3282 -8.7969 -2.9596
20 6 1.4044 -8.5603 -1.9606
21 6 1.7704 -7.8437 -0.8308
22 7 0.8363 -7.6037 0.1819
23 6 -0.4184 -8.0974 0.2751
24 7 -0.9423 -7.6204 1.3736
25 7 -0.1052 -6.8597 1.9816
26 7 1.0032 -6.8022 1.3251
27 6 4.2103 -4.7669 -0.9703
28 6 3.5296 -3.3897 -1.0204
29 1 -0.4850 0.8401 -0.0004
30 1 3.8745 -0.6130 0.8478
31 1 3.8752 -0.7505 -0.9268
32 1 2.5342 -3.2974 1.4266
33 1 3.9320 -2.5180 2.2065
34 1 3.9245 -5.0343 2.4391
35 1 5.3743 -4.4043 1.6135
36 1 5.0138 -7.2324 -1.6426
37 1 4.3396 -8.5127 -3.6283
38 1 2.0384 -9.3547 -3.8378
39 1 0.3958 -8.9336 -2.0593
40 1 -0.8990 -8.7617 -0.4278
41 1 5.2818 -4.6552 -1.1361
42 1 3.7841 -5.4154 -1.7356
43 1 2.4487 -3.5125 -0.9536
44 1 3.7825 -2.8943 -1.9579
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602205601.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:33
Heat of formation + Delta-G solvation = 153.373612 kcal
Electronic energy + Delta-G solvation = -30600.524474 eV
Core-core repulsion = 26557.129749 eV
Total energy + Delta-G solvation = -4043.394725 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.155 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-43.21204 -40.66074 -38.99560 -37.44904 -35.38541 -34.46420 -32.55756 -32.28299
-31.80816 -30.53730 -30.39589 -28.59128 -25.92659 -25.22743 -24.45776 -23.41042
-22.69275 -22.19333 -21.75859 -20.51539 -19.28281 -18.43987 -17.48680 -16.82935
-16.63625 -16.39285 -16.16718 -15.69712 -15.41251 -14.89142 -14.59830 -14.54529
-14.47439 -14.09050 -13.70594 -13.60466 -13.48830 -13.04467 -12.72564 -12.46937
-12.37657 -12.30552 -12.12620 -11.82884 -11.72399 -11.39969 -11.23705 -11.03696
-10.96054 -10.64605 -10.50512 -10.42788 -10.33569 -9.99874 -9.83573 -9.56083
-9.40476 -9.02921 -8.63390 -8.43693 -7.32159 -6.13068 -4.14367 0.04971
0.57279 1.44307 1.65861 2.28893 2.66170 2.97254 3.24546 3.29927
3.33039 3.35410 3.81310 3.97331 4.22773 4.35992 4.38453 4.49523
4.65949 4.75012 4.78466 4.92151 5.14225 5.17925 5.20381 5.26947
5.35959 5.42871 5.54674 5.64020 5.67910 5.72768 5.83220 5.85731
5.96696 6.01604 6.07338 6.32397 6.37520 6.57606 6.67631 6.75685
6.88347 6.99461 7.45578 7.54730 7.93347 7.96025 8.24668 8.39911
8.41924 8.88575 9.48487 10.99814
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.011859 B = 0.003833 C = 0.003472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2360.571087 B = 7302.277661 C = 8063.490641
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.073 3.927
3 Si 0.879 3.121
4 H -0.276 1.276
5 H -0.287 1.287
6 H -0.263 1.263
7 C -0.554 4.554
8 H 0.072 0.928
9 C 0.154 3.846
10 N -0.532 5.532
11 C 0.048 3.952
12 C 0.121 3.879
13 N -0.595 5.595
14 C 0.561 3.439
15 O -0.516 6.516
16 C -0.106 4.106
17 C -0.070 4.070
18 C -0.116 4.116
19 C -0.079 4.079
20 C -0.127 4.127
21 C 0.174 3.826
22 N -0.338 5.338
23 C 0.219 3.781
24 N -0.330 5.330
25 N -0.038 5.038
26 N -0.025 5.025
27 C 0.105 3.895
28 C 0.049 3.951
29 H 0.264 0.736
30 H 0.032 0.968
31 H 0.026 0.974
32 H 0.050 0.950
33 H 0.079 0.921
34 H 0.090 0.910
35 H 0.069 0.931
36 H 0.143 0.857
37 H 0.140 0.860
38 H 0.142 0.858
39 H 0.141 0.859
40 H 0.237 0.763
41 H 0.075 0.925
42 H 0.079 0.921
43 H 0.047 0.953
44 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.636 -19.955 -9.576 23.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.130 4.130
3 Si 0.706 3.294
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.187 1.187
7 C -0.592 4.592
8 H 0.090 0.910
9 C 0.027 3.973
10 N -0.256 5.256
11 C -0.081 4.081
12 C -0.001 4.001
13 N -0.328 5.328
14 C 0.346 3.654
15 O -0.391 6.391
16 C -0.111 4.111
17 C -0.089 4.089
18 C -0.135 4.135
19 C -0.098 4.098
20 C -0.148 4.148
21 C 0.080 3.920
22 N -0.129 5.129
23 C -0.078 4.078
24 N -0.176 5.176
25 N -0.033 5.033
26 N -0.009 5.009
27 C -0.018 4.018
28 C -0.081 4.081
29 H 0.074 0.926
30 H 0.050 0.950
31 H 0.044 0.956
32 H 0.068 0.932
33 H 0.097 0.903
34 H 0.109 0.891
35 H 0.087 0.913
36 H 0.161 0.839
37 H 0.158 0.842
38 H 0.160 0.840
39 H 0.158 0.842
40 H 0.253 0.747
41 H 0.093 0.907
42 H 0.097 0.903
43 H 0.066 0.934
44 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 7.863 -19.275 -7.686 22.191
hybrid contribution -0.610 0.561 -1.029 1.321
sum 7.253 -18.714 -8.714 21.881
Atomic orbital electron populations
1.69939 1.06416 1.27040 1.50062 1.24981 0.94683 0.99238 0.94090
0.86793 0.80427 0.83562 0.78586 1.20211 1.21265 1.18748 1.21660
0.90604 0.94651 1.52310 0.90963 1.20214 0.94692 0.85345 0.97031
1.62431 1.58426 1.03809 1.00936 1.22271 0.99265 0.93380 0.93154
1.21835 0.99744 0.90821 0.87711 1.48005 1.62896 1.13494 1.08406
1.17827 0.77871 0.81679 0.87974 1.90806 1.53665 1.68632 1.26039
1.19822 0.92540 1.01664 0.97120 1.21306 0.99374 0.96592 0.91589
1.21280 0.96719 0.97436 0.98015 1.21157 0.92682 0.98020 0.97947
1.20849 1.01480 1.00267 0.92221 1.17420 0.87284 0.99906 0.87396
1.49076 1.11433 1.34234 1.18141 1.27394 0.83308 0.98975 0.98134
1.74444 1.25668 1.11720 1.05815 1.78166 0.94984 1.10132 1.19999
1.83159 1.16504 1.09982 0.91300 1.22231 1.00897 0.95281 0.83429
1.22326 0.98381 0.91691 0.95683 0.92634 0.94982 0.95632 0.93175
0.90288 0.89120 0.91263 0.83915 0.84210 0.84007 0.84162 0.74671
0.90715 0.90250 0.93434 0.90386
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16
2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16
3 Si 0.88 21.25 27.56 -169.99 -4.68 16.57 16
4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
6 H -0.26 -6.08 6.42 56.52 0.36 -5.72 16
7 C -0.55 -15.35 8.32 -34.44 -0.29 -15.63 16
8 H 0.07 2.23 6.12 -52.48 -0.32 1.91 16
9 C 0.15 3.59 4.20 -4.97 -0.02 3.57 16
10 N -0.53 -10.60 4.83 -235.46 -1.14 -11.74 16
11 C 0.05 0.95 5.24 -3.70 -0.02 0.93 16
12 C 0.12 2.01 6.58 -3.60 -0.02 1.98 16
13 N -0.60 -9.39 3.00 -173.37 -0.52 -9.91 16
14 C 0.56 9.10 5.72 -12.43 -0.07 9.03 16
15 O -0.52 -10.07 14.37 5.30 0.08 -9.99 16
16 C -0.11 -1.33 4.77 -104.82 -0.50 -1.83 16
17 C -0.07 -0.60 7.57 -39.20 -0.30 -0.89 16
18 C -0.12 -0.67 10.02 -39.62 -0.40 -1.07 16
19 C -0.08 -0.42 10.03 -39.53 -0.40 -0.82 16
20 C -0.13 -0.92 9.48 -39.45 -0.37 -1.29 16
21 C 0.17 2.07 6.70 -83.31 -0.56 1.51 16
22 N -0.34 -4.91 3.82 -11.53 -0.04 -4.95 16
23 C 0.22 2.60 12.15 -90.10 -1.09 1.50 16
24 N -0.33 -5.34 12.15 29.65 0.36 -4.98 16
25 N -0.04 -0.74 13.39 60.35 0.81 0.07 16
26 N -0.02 -0.47 9.91 60.35 0.60 0.13 16
27 C 0.10 1.44 5.84 -3.36 -0.02 1.42 16
28 C 0.05 0.87 5.18 -3.46 -0.02 0.86 16
29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
30 H 0.03 0.76 6.82 -51.93 -0.35 0.41 16
31 H 0.03 0.59 7.79 -51.93 -0.40 0.19 16
32 H 0.05 1.17 7.07 -51.93 -0.37 0.81 16
33 H 0.08 1.50 8.06 -51.93 -0.42 1.08 16
34 H 0.09 1.59 7.09 -51.93 -0.37 1.22 16
35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
36 H 0.14 1.01 7.64 -52.48 -0.40 0.61 16
37 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16
38 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16
39 H 0.14 0.55 6.92 -52.49 -0.36 0.19 16
40 H 0.24 1.18 7.23 -52.49 -0.38 0.80 16
41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16
42 H 0.08 0.93 5.06 -51.93 -0.26 0.66 16
43 H 0.05 1.03 6.65 -51.93 -0.35 0.69 16
44 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16
LS Contribution 356.14 15.07 5.37 5.37
Total: -1.00 -37.87 356.14 -7.85 -45.71
By element:
Atomic # 1 Polarization: 4.56 SS G_CDS: -5.27 Total: -0.72 kcal
Atomic # 6 Polarization: 5.43 SS G_CDS: -4.17 Total: 1.25 kcal
Atomic # 7 Polarization: -59.03 SS G_CDS: 0.84 Total: -58.19 kcal
Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal
Atomic # 14 Polarization: 21.25 SS G_CDS: -4.68 Total: 16.57 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -37.87 -7.85 -45.71 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602205601.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 199.088 kcal
(2) G-P(sol) polarization free energy of solvation -37.866 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.222 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.714 kcal
(6) G-S(sol) free energy of system = (1) + (5) 153.374 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds