Wall clock time and date at job start Sat Apr 11 2020 06:35:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86803 * 119.99997 * 2 1
4 4 H 1.48501 * 109.47139 * 270.00000 * 3 2 1
5 5 H 1.48502 * 109.47166 * 30.00155 * 3 2 1
6 6 H 1.48497 * 109.46720 * 149.99962 * 3 2 1
7 7 C 1.37873 * 119.99893 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00336 * 359.97438 * 7 2 1
9 9 C 1.50698 * 120.00005 * 180.02562 * 7 2 1
10 10 N 1.46905 * 109.47114 * 175.52735 * 9 7 2
11 11 C 1.46900 * 110.99954 * 295.65353 * 10 9 7
12 12 C 1.53246 * 109.33786 * 187.25224 * 11 10 9
13 13 N 1.47082 * 108.52224 * 306.17334 * 12 11 10
14 14 C 1.34776 * 120.87920 * 231.19123 * 13 12 11
15 15 O 1.21574 * 120.00002 * 355.56645 * 14 13 12
16 16 C 1.47629 * 119.99800 * 175.85185 * 14 13 12
17 17 C 1.39622 * 120.19128 * 57.45701 * 16 14 13
18 18 C 1.37871 * 119.91703 * 179.78900 * 17 16 14
19 19 C 1.38496 * 120.29930 * 0.48882 * 18 17 16
20 20 C 1.38112 * 120.38007 * 359.74168 * 19 18 17
21 21 C 1.38707 * 120.08005 * 0.02562 * 20 19 18
22 22 N 1.39844 * 120.15108 * 180.02562 * 21 20 19
23 23 C 1.35152 * 127.39766 * 6.51286 * 22 21 20
24 24 N 1.30711 * 107.26452 * 180.02562 * 23 22 21
25 25 N 1.28419 * 110.65668 * 359.97438 * 24 23 22
26 26 N 1.28948 * 110.22035 * 359.70357 * 25 24 23
27 27 C 1.47078 * 118.23851 * 51.45355 * 13 12 11
28 28 C 1.46897 * 110.99750 * 59.95674 * 10 9 7
29 29 H 0.97001 * 119.99633 * 0.02562 * 1 2 3
30 30 H 1.08999 * 109.47002 * 55.53075 * 9 7 2
31 31 H 1.09000 * 109.47371 * 295.53013 * 9 7 2
32 32 H 1.08992 * 109.49210 * 67.29558 * 11 10 9
33 33 H 1.08996 * 109.49659 * 307.21176 * 11 10 9
34 34 H 1.08999 * 109.62457 * 186.45898 * 12 11 10
35 35 H 1.09002 * 109.62623 * 65.87933 * 12 11 10
36 36 H 1.08005 * 120.03941 * 359.97438 * 17 16 14
37 37 H 1.07999 * 119.84812 * 180.23216 * 18 17 16
38 38 H 1.07998 * 119.80840 * 179.71951 * 19 18 17
39 39 H 1.08002 * 119.95995 * 180.02562 * 20 19 18
40 40 H 1.08000 * 126.36436 * 359.97438 * 23 22 21
41 41 H 1.09002 * 109.62907 * 68.25240 * 27 13 12
42 42 H 1.08996 * 109.63014 * 188.83745 * 27 13 12
43 43 H 1.08998 * 109.49359 * 292.70489 * 28 10 9
44 44 H 1.09003 * 109.49618 * 52.78705 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0465 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 0.0000
10 7 4.0011 -2.5750 0.1073
11 6 3.6163 -3.1715 1.3934
12 6 4.2948 -4.5375 1.5424
13 7 3.9741 -5.3500 0.3591
14 6 3.4820 -6.5980 0.4896
15 8 3.3732 -7.0962 1.5932
16 6 3.0810 -7.3622 -0.7081
17 6 4.0035 -7.6045 -1.7278
18 6 3.6241 -8.3227 -2.8419
19 6 2.3282 -8.7969 -2.9596
20 6 1.4044 -8.5603 -1.9606
21 6 1.7704 -7.8437 -0.8308
22 7 0.8363 -7.6037 0.1819
23 6 -0.4184 -8.0974 0.2751
24 7 -0.9423 -7.6204 1.3736
25 7 -0.1052 -6.8597 1.9816
26 7 1.0032 -6.8022 1.3251
27 6 4.2103 -4.7669 -0.9703
28 6 3.5296 -3.3897 -1.0204
29 1 -0.4850 0.8401 -0.0004
30 1 3.8745 -0.6130 0.8478
31 1 3.8752 -0.7505 -0.9268
32 1 2.5342 -3.2974 1.4266
33 1 3.9320 -2.5180 2.2065
34 1 3.9245 -5.0343 2.4391
35 1 5.3743 -4.4043 1.6135
36 1 5.0138 -7.2324 -1.6426
37 1 4.3396 -8.5127 -3.6283
38 1 2.0384 -9.3547 -3.8378
39 1 0.3958 -8.9336 -2.0593
40 1 -0.8990 -8.7617 -0.4278
41 1 5.2818 -4.6552 -1.1361
42 1 3.7841 -5.4154 -1.7356
43 1 2.4487 -3.5125 -0.9536
44 1 3.7825 -2.8943 -1.9579
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602205601.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:32
Heat of formation + Delta-G solvation = 123.818483 kcal
Electronic energy + Delta-G solvation = -30601.806081 eV
Core-core repulsion = 26557.129749 eV
Total energy + Delta-G solvation = -4044.676332 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.155 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-44.34054 -41.68322 -40.02994 -38.86568 -36.41250 -35.93481 -34.41716 -33.54052
-32.88519 -31.70701 -31.23372 -30.32941 -27.48215 -26.32155 -25.39507 -24.79306
-24.14148 -23.25473 -22.97342 -21.86291 -20.53285 -19.49866 -18.90352 -18.47513
-17.75894 -17.40828 -17.33417 -16.60053 -16.53199 -16.20145 -16.08181 -15.95529
-15.83667 -15.28285 -14.93353 -14.70137 -14.51637 -14.48952 -14.24608 -13.88183
-13.78801 -13.63469 -13.14457 -13.06698 -12.93797 -12.65268 -12.48407 -12.41538
-12.28636 -12.20342 -12.15297 -12.01885 -11.79847 -11.71876 -11.65289 -11.00214
-10.84288 -10.10183 -9.80899 -9.73507 -9.11775 -8.36108 -6.43485 -0.81105
-0.02202 0.54949 0.74920 1.14674 1.32724 1.35961 1.47418 1.52442
1.94937 2.30309 2.57612 2.93774 2.98927 3.17291 3.23964 3.30375
3.66418 3.86421 3.91727 4.01773 4.06272 4.11568 4.19646 4.23973
4.28791 4.37204 4.38031 4.43535 4.52648 4.68351 4.73325 4.79932
4.95171 4.99700 5.01979 5.05061 5.11870 5.19213 5.32351 5.35151
5.41415 5.42956 5.76730 5.95728 6.21877 6.24679 6.35663 6.63511
7.04821 7.23331 7.23868 8.81029
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.011859 B = 0.003833 C = 0.003472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2360.571087 B = 7302.277661 C = 8063.490641
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.952 5.952
2 C 0.007 3.993
3 Si 0.957 3.043
4 H -0.260 1.260
5 H -0.288 1.288
6 H -0.241 1.241
7 C -0.552 4.552
8 H 0.018 0.982
9 C 0.159 3.841
10 N -0.517 5.517
11 C 0.057 3.943
12 C 0.131 3.869
13 N -0.603 5.603
14 C 0.556 3.444
15 O -0.561 6.561
16 C -0.141 4.141
17 C -0.074 4.074
18 C -0.097 4.097
19 C -0.064 4.064
20 C -0.115 4.115
21 C 0.128 3.872
22 N -0.334 5.334
23 C 0.237 3.763
24 N -0.362 5.362
25 N -0.083 5.083
26 N -0.077 5.077
27 C 0.117 3.883
28 C 0.049 3.951
29 H 0.266 0.734
30 H 0.035 0.965
31 H 0.042 0.958
32 H -0.006 1.006
33 H 0.082 0.918
34 H 0.072 0.928
35 H 0.099 0.901
36 H 0.157 0.843
37 H 0.181 0.819
38 H 0.188 0.812
39 H 0.177 0.823
40 H 0.304 0.696
41 H 0.110 0.890
42 H 0.105 0.895
43 H -0.004 1.004
44 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.429 -21.588 -13.995 27.761
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.593 5.593
2 C -0.191 4.191
3 Si 0.780 3.220
4 H -0.184 1.184
5 H -0.214 1.214
6 H -0.164 1.164
7 C -0.591 4.591
8 H 0.037 0.963
9 C 0.032 3.968
10 N -0.240 5.240
11 C -0.073 4.073
12 C 0.009 3.991
13 N -0.335 5.335
14 C 0.344 3.656
15 O -0.440 6.440
16 C -0.146 4.146
17 C -0.093 4.093
18 C -0.115 4.115
19 C -0.082 4.082
20 C -0.136 4.136
21 C 0.036 3.964
22 N -0.125 5.125
23 C -0.059 4.059
24 N -0.210 5.210
25 N -0.078 5.078
26 N -0.062 5.062
27 C -0.005 4.005
28 C -0.081 4.081
29 H 0.075 0.925
30 H 0.053 0.947
31 H 0.060 0.940
32 H 0.012 0.988
33 H 0.101 0.899
34 H 0.090 0.910
35 H 0.117 0.883
36 H 0.175 0.825
37 H 0.198 0.802
38 H 0.206 0.794
39 H 0.195 0.805
40 H 0.319 0.681
41 H 0.128 0.872
42 H 0.123 0.877
43 H 0.014 0.986
44 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 10.700 -20.932 -12.145 26.461
hybrid contribution -1.529 0.863 0.158 1.763
sum 9.171 -20.069 -11.987 25.111
Atomic orbital electron populations
1.70125 1.08756 1.28270 1.52112 1.26056 0.95541 1.03916 0.93577
0.85566 0.79426 0.77455 0.79578 1.18414 1.21425 1.16401 1.21874
0.93091 0.92648 1.51456 0.96350 1.20120 0.91326 0.87674 0.97686
1.62489 1.57196 1.02749 1.01528 1.22188 0.96114 0.95550 0.93439
1.21618 1.00740 0.88786 0.88003 1.48130 1.63049 1.13645 1.08685
1.18511 0.76476 0.81661 0.88907 1.90762 1.55071 1.69770 1.28355
1.19766 0.94240 1.03485 0.97106 1.21563 0.99213 0.97153 0.91364
1.21821 0.97775 0.94660 0.97236 1.21789 0.91819 0.96416 0.98208
1.21402 1.03768 0.98088 0.90305 1.18068 0.86969 1.02838 0.88553
1.49230 1.12714 1.33084 1.17467 1.28568 0.82193 0.97726 0.97376
1.74281 1.26385 1.12556 1.07775 1.78117 0.95902 1.12007 1.21740
1.83052 1.16970 1.12505 0.93682 1.22315 1.02453 0.92585 0.83134
1.22412 0.95813 0.94344 0.95488 0.92539 0.94709 0.93975 0.98784
0.89938 0.90971 0.88265 0.82543 0.80155 0.79439 0.80534 0.68092
0.87226 0.87702 0.98574 0.88808
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16
2 C 0.01 0.40 5.47 84.65 0.46 0.86 16
3 Si 0.96 44.12 27.56 68.60 1.89 46.01 16
4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16
5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16
6 H -0.24 -10.16 6.42 99.48 0.64 -9.52 16
7 C -0.55 -32.27 8.32 25.60 0.21 -32.06 16
8 H 0.02 1.24 6.12 -2.91 -0.02 1.23 16
9 C 0.16 7.48 4.20 85.56 0.36 7.84 16
10 N -0.52 -20.90 4.83 -898.87 -4.34 -25.24 16
11 C 0.06 2.37 5.24 86.39 0.45 2.82 16
12 C 0.13 4.58 6.58 86.35 0.57 5.15 16
13 N -0.60 -19.60 3.00 -820.68 -2.46 -22.06 16
14 C 0.56 18.92 5.72 86.72 0.50 19.41 16
15 O -0.56 -23.71 14.37 -3.95 -0.06 -23.77 16
16 C -0.14 -3.45 4.77 -20.00 -0.10 -3.55 16
17 C -0.07 -1.02 7.57 22.52 0.17 -0.85 16
18 C -0.10 -0.56 10.02 22.24 0.22 -0.33 16
19 C -0.06 -0.28 10.03 22.30 0.22 -0.05 16
20 C -0.11 -1.16 9.48 22.35 0.21 -0.95 16
21 C 0.13 2.91 6.70 38.44 0.26 3.17 16
22 N -0.33 -10.03 3.82 -190.39 -0.73 -10.76 16
23 C 0.24 5.54 12.15 180.17 2.19 7.73 16
24 N -0.36 -12.48 12.15 -60.09 -0.73 -13.21 16
25 N -0.08 -3.58 13.39 37.02 0.50 -3.08 16
26 N -0.08 -3.24 9.91 37.02 0.37 -2.88 16
27 C 0.12 3.08 5.84 86.50 0.50 3.58 16
28 C 0.05 1.79 5.18 86.54 0.45 2.23 16
29 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16
30 H 0.03 1.63 6.82 -2.39 -0.02 1.61 16
31 H 0.04 1.87 7.79 -2.39 -0.02 1.85 16
32 H -0.01 -0.33 7.07 -2.39 -0.02 -0.35 16
33 H 0.08 3.31 8.06 -2.39 -0.02 3.29 16
34 H 0.07 2.79 7.09 -2.39 -0.02 2.77 16
35 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16
36 H 0.16 1.63 7.64 -2.91 -0.02 1.61 16
37 H 0.18 -0.33 8.06 -2.91 -0.02 -0.35 16
38 H 0.19 -0.76 8.06 -2.91 -0.02 -0.78 16
39 H 0.18 0.36 6.92 -2.91 -0.02 0.34 16
40 H 0.30 1.94 7.23 -2.91 -0.02 1.92 16
41 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16
42 H 0.10 2.24 5.06 -2.39 -0.01 2.23 16
43 H 0.00 -0.20 6.65 -2.39 -0.02 -0.21 16
44 H 0.09 3.11 8.11 -2.39 -0.02 3.09 16
Total: -1.00 -97.82 356.14 2.40 -95.42
By element:
Atomic # 1 Polarization: 4.90 SS G_CDS: 0.98 Total: 5.88 kcal
Atomic # 6 Polarization: 8.33 SS G_CDS: 6.69 Total: 15.01 kcal
Atomic # 7 Polarization: -131.47 SS G_CDS: -7.10 Total: -138.57 kcal
Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.77 kcal
Atomic # 14 Polarization: 44.12 SS G_CDS: 1.89 Total: 46.01 kcal
Total: -97.82 2.40 -95.42 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602205601.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 219.241 kcal
(2) G-P(sol) polarization free energy of solvation -97.821 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.420 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.423 kcal
(6) G-S(sol) free energy of system = (1) + (5) 123.818 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds