Wall clock time and date at job start Sat Apr 11 2020 06:35:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35972 * 116.99782 * 2 1
4 4 C 1.38548 * 120.08390 * 359.97438 * 3 2 1
5 5 C 1.38244 * 120.01314 * 179.97438 * 4 3 2
6 6 C 1.38276 * 120.18025 * 359.97438 * 5 4 3
7 7 C 1.38186 * 120.16605 * 0.02562 * 6 5 4
8 8 C 1.38728 * 119.98114 * 359.74374 * 7 6 5
9 9 N 1.40129 * 120.08649 * 180.27424 * 8 7 6
10 10 C 1.46763 * 124.34790 * 269.96140 * 9 8 7
11 11 C 1.54662 * 105.38390 * 162.85761 * 10 9 8
12 12 C 1.54630 * 101.68378 * 25.76465 * 11 10 9
13 13 H 1.08996 * 110.48226 * 216.31219 * 12 11 10
14 14 N 1.46495 * 110.59768 * 93.72328 * 12 11 10
15 15 C 1.35314 * 125.86999 * 278.41852 * 14 12 11
16 16 C 1.35350 * 106.17539 * 179.90567 * 15 14 12
17 17 C 1.50703 * 126.74825 * 180.12686 * 16 15 14
18 18 C 1.50700 * 109.47168 * 125.24770 * 17 16 15
19 19 H 1.08000 * 119.99908 * 0.02562 * 18 17 16
20 20 C 1.37873 * 120.00138 * 179.97438 * 18 17 16
21 21 N 1.31510 * 120.00059 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 120.00181 * 179.97438 * 20 18 17
23 23 H 1.48504 * 109.46899 * 60.00173 * 22 20 18
24 24 H 1.48500 * 109.47425 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.47126 * 300.00771 * 22 20 18
26 26 N 1.33769 * 106.49594 * 0.35498 * 16 15 14
27 27 N 1.28628 * 108.88765 * 359.76945 * 26 16 15
28 28 C 1.34414 * 124.35443 * 90.26352 * 9 8 7
29 29 O 1.21303 * 124.93798 * 0.42241 * 28 9 8
30 30 H 1.09001 * 109.46558 * 60.00246 * 1 2 3
31 31 H 1.09001 * 109.47103 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47187 * 300.00198 * 1 2 3
33 33 H 1.07997 * 119.99071 * 359.94930 * 4 3 2
34 34 H 1.08002 * 119.90727 * 179.97438 * 5 4 3
35 35 H 1.07999 * 119.91604 * 179.97438 * 6 5 4
36 36 H 1.08003 * 120.01070 * 179.97438 * 7 6 5
37 37 H 1.09010 * 110.24375 * 281.98290 * 10 9 8
38 38 H 1.09001 * 110.24858 * 43.98354 * 10 9 8
39 39 H 1.09002 * 111.18955 * 267.59261 * 11 10 9
40 40 H 1.08997 * 110.85179 * 143.78925 * 11 10 9
41 41 H 1.08003 * 126.91363 * 0.02562 * 15 14 12
42 42 H 1.09004 * 109.46699 * 245.24389 * 17 16 15
43 43 H 1.08998 * 109.47176 * 5.24732 * 17 16 15
44 44 H 0.97002 * 120.00050 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0463 1.2115 0.0000
4 6 1.2934 2.3746 -0.0005
5 6 1.9225 3.6056 0.0000
6 6 3.3032 3.6807 0.0016
7 6 4.0614 2.5254 0.0021
8 6 3.4372 1.2865 0.0065
9 7 4.2039 0.1136 0.0128
10 6 4.6584 -0.5852 -1.1951
11 6 5.7961 -1.5210 -0.7242
12 6 5.4256 -1.7418 0.7607
13 1 6.3250 -1.7991 1.3738
14 7 4.6222 -2.9569 0.9163
15 6 3.2900 -3.0593 0.7026
16 6 2.9648 -4.3477 0.9598
17 6 1.5949 -4.9684 0.8635
18 6 1.6504 -6.1697 -0.0448
19 1 2.5844 -6.4553 -0.5059
20 6 0.5092 -6.9046 -0.2864
21 7 -0.6279 -6.5570 0.2754
22 14 0.5778 -8.3931 -1.4129
23 1 1.5345 -9.3867 -0.8625
24 1 -0.7720 -9.0049 -1.5077
25 1 1.0256 -7.9709 -2.7644
26 7 4.0977 -4.9605 1.3211
27 7 5.0613 -4.1093 1.2851
28 6 4.6128 -0.5193 1.1259
29 8 4.3657 -0.1622 2.2586
30 1 -0.3632 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5139 0.8900
33 1 0.2148 2.3194 -0.0018
34 1 1.3339 4.5111 -0.0008
35 1 3.7902 4.6446 0.0016
36 1 5.1397 2.5869 0.0030
37 1 3.8419 -1.1660 -1.6245
38 1 5.0377 0.1303 -1.9247
39 1 6.7682 -1.0364 -0.8158
40 1 5.7779 -2.4615 -1.2748
41 1 2.6211 -2.2719 0.3881
42 1 1.2658 -5.2779 1.8555
43 1 0.8932 -4.2391 0.4589
44 1 -1.4310 -7.0739 0.1051
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000603232543.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:37
Heat of formation + Delta-G solvation = 74.294920 kcal
Electronic energy + Delta-G solvation = -30104.726933 eV
Core-core repulsion = 26025.610347 eV
Total energy + Delta-G solvation = -4079.116586 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.148 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.72783 -41.18132 -39.83349 -37.64984 -36.79977 -34.69940 -33.33221 -31.86653
-30.96320 -30.54423 -29.30983 -27.88924 -27.43582 -27.21704 -23.68374 -23.31736
-23.01792 -22.46469 -21.31887 -20.30317 -19.97493 -18.46151 -17.67729 -17.50889
-16.56174 -16.26387 -15.93507 -15.66695 -15.46677 -15.32045 -14.96542 -14.77722
-14.47218 -14.15841 -14.09264 -13.92836 -13.69606 -13.23390 -12.90245 -12.66099
-12.39208 -12.24157 -12.13576 -12.03131 -11.81395 -11.58369 -11.40546 -11.34301
-11.01584 -10.74714 -10.67243 -10.50928 -10.03520 -9.69480 -9.44781 -9.32340
-9.25713 -9.22219 -8.49736 -8.42253 -8.11653 -5.97931 -3.98379 0.81820
1.07317 1.78449 2.16035 2.48958 2.98853 3.06944 3.30063 3.38459
3.41472 3.43576 3.52684 3.79391 4.04612 4.34314 4.49849 4.51630
4.54569 4.56794 4.78319 4.92115 4.99452 5.03958 5.06565 5.11151
5.19602 5.24870 5.35402 5.38981 5.42152 5.52644 5.55349 5.84565
5.89325 5.94096 6.09326 6.09939 6.19858 6.26865 6.44013 6.61197
7.10452 7.11894 7.14275 7.54662 7.64210 7.79145 7.99667 8.38338
9.04486 9.28656 9.64087 11.13171
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.012982 B = 0.003466 C = 0.002962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2156.393084 B = 8075.698340 C = 9451.133286
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.305 6.305
3 C 0.144 3.856
4 C -0.205 4.205
5 C -0.071 4.071
6 C -0.154 4.154
7 C -0.069 4.069
8 C 0.103 3.897
9 N -0.560 5.560
10 C 0.100 3.900
11 C -0.140 4.140
12 C 0.123 3.877
13 H 0.143 0.857
14 N -0.293 5.293
15 C -0.073 4.073
16 C 0.037 3.963
17 C 0.094 3.906
18 C -0.502 4.502
19 H 0.059 0.941
20 C 0.057 3.943
21 N -0.899 5.899
22 Si 0.896 3.104
23 H -0.275 1.275
24 H -0.288 1.288
25 H -0.278 1.278
26 N -0.254 5.254
27 N -0.103 5.103
28 C 0.523 3.477
29 O -0.493 6.493
30 H 0.057 0.943
31 H 0.112 0.888
32 H 0.057 0.943
33 H 0.135 0.865
34 H 0.129 0.871
35 H 0.129 0.871
36 H 0.132 0.868
37 H 0.085 0.915
38 H 0.090 0.910
39 H 0.108 0.892
40 H 0.107 0.893
41 H 0.181 0.819
42 H 0.039 0.961
43 H 0.035 0.965
44 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.685 24.367 -5.656 26.169
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.217 6.217
3 C 0.096 3.904
4 C -0.224 4.224
5 C -0.089 4.089
6 C -0.173 4.173
7 C -0.088 4.088
8 C 0.013 3.987
9 N -0.291 5.291
10 C -0.021 4.021
11 C -0.179 4.179
12 C 0.015 3.985
13 H 0.160 0.840
14 N -0.090 5.090
15 C -0.221 4.221
16 C -0.099 4.099
17 C 0.055 3.945
18 C -0.541 4.541
19 H 0.077 0.923
20 C -0.143 4.143
21 N -0.538 5.538
22 Si 0.724 3.276
23 H -0.201 1.201
24 H -0.214 1.214
25 H -0.204 1.204
26 N -0.121 5.121
27 N -0.081 5.081
28 C 0.308 3.692
29 O -0.364 6.364
30 H 0.075 0.925
31 H 0.130 0.870
32 H 0.075 0.925
33 H 0.153 0.847
34 H 0.147 0.853
35 H 0.147 0.853
36 H 0.150 0.850
37 H 0.104 0.896
38 H 0.109 0.891
39 H 0.126 0.874
40 H 0.126 0.874
41 H 0.198 0.802
42 H 0.057 0.943
43 H 0.053 0.947
44 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 8.646 23.535 -4.580 25.488
hybrid contribution -1.224 0.118 -0.998 1.584
sum 7.422 23.652 -5.578 25.409
Atomic orbital electron populations
1.23221 0.77328 1.05365 1.01124 1.86170 1.22165 1.25823 1.87583
1.19374 0.91360 0.85328 0.94315 1.21234 1.00479 0.91837 1.08832
1.21050 0.94685 0.97097 0.96036 1.20937 0.93796 0.98041 1.04556
1.21130 1.00316 0.90480 0.96898 1.16626 0.86304 0.85509 1.10222
1.45240 1.52076 1.24303 1.07500 1.22371 0.97398 0.95369 0.87005
1.23135 0.99463 1.02122 0.93211 1.21946 0.95508 0.80864 1.00162
0.83968 1.46743 1.07123 1.08554 1.46549 1.23412 0.85019 1.01214
1.12417 1.22985 0.98164 0.89814 0.98974 1.17712 0.82993 0.95379
0.98381 1.21002 0.95073 1.10637 1.27394 0.92297 1.24960 0.95376
0.97702 0.96305 1.69937 0.99591 1.40185 1.44106 0.86585 0.76951
0.83022 0.81041 1.20074 1.21354 1.20357 1.75062 0.97384 1.22760
1.16922 1.78250 1.23439 0.87786 1.18605 1.20511 0.79841 0.84227
0.84638 1.90788 1.56124 1.68616 1.20914 0.92480 0.86977 0.92457
0.84697 0.85327 0.85263 0.85013 0.89639 0.89122 0.87399 0.87418
0.80230 0.94292 0.94662 0.92908
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.25 9.81 101.05 0.99 1.24 16
2 O -0.31 -4.05 9.72 -19.65 -0.19 -4.24 16
3 C 0.14 1.73 6.70 -39.08 -0.26 1.46 16
4 C -0.20 -1.92 9.04 -39.46 -0.36 -2.28 16
5 C -0.07 -0.55 10.04 -39.57 -0.40 -0.94 16
6 C -0.15 -1.19 10.04 -39.59 -0.40 -1.58 16
7 C -0.07 -0.63 9.96 -39.42 -0.39 -1.03 16
8 C 0.10 1.21 5.40 -83.49 -0.45 0.75 16
9 N -0.56 -6.58 2.70 -112.01 -0.30 -6.89 16
10 C 0.10 0.90 7.29 -3.02 -0.02 0.87 16
11 C -0.14 -1.21 6.90 -25.00 -0.17 -1.38 16
12 C 0.12 1.59 3.95 -67.94 -0.27 1.32 16
13 H 0.14 1.59 8.14 -51.93 -0.42 1.17 16
14 N -0.29 -5.26 3.30 -54.78 -0.18 -5.44 16
15 C -0.07 -1.45 10.68 -17.05 -0.18 -1.64 16
16 C 0.04 0.89 6.44 -82.78 -0.53 0.35 16
17 C 0.09 2.51 5.55 -29.03 -0.16 2.35 16
18 C -0.50 -14.51 9.09 -34.44 -0.31 -14.82 16
19 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16
20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16
21 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16
22 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16
23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
26 N -0.25 -6.20 12.40 33.29 0.41 -5.79 16
27 N -0.10 -2.16 13.16 60.35 0.79 -1.37 16
28 C 0.52 7.57 6.60 -10.86 -0.07 7.50 16
29 O -0.49 -9.11 17.71 5.54 0.10 -9.02 16
30 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16
31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16
32 H 0.06 0.51 7.67 -51.93 -0.40 0.12 16
33 H 0.14 1.01 6.30 -52.49 -0.33 0.68 16
34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16
35 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16
36 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16
37 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16
38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
39 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16
41 H 0.18 3.33 7.38 -52.48 -0.39 2.94 16
42 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16
43 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16
44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16
LS Contribution 380.38 15.07 5.73 5.73
Total: -1.00 -37.00 380.38 -6.71 -43.71
By element:
Atomic # 1 Polarization: 4.10 SS G_CDS: -5.70 Total: -1.60 kcal
Atomic # 6 Polarization: -3.19 SS G_CDS: -3.09 Total: -6.28 kcal
Atomic # 7 Polarization: -46.75 SS G_CDS: 1.46 Total: -45.29 kcal
Atomic # 8 Polarization: -13.17 SS G_CDS: -0.09 Total: -13.26 kcal
Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -37.00 -6.71 -43.71 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000603232543.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.002 kcal
(2) G-P(sol) polarization free energy of solvation -36.998 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.295 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds