Wall clock time and date at job start Sat Apr 11 2020 06:36:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86802 * 119.99581 * 2 1
4 4 H 1.48502 * 109.46833 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47183 * 299.99457 * 3 2 1
6 6 H 1.48500 * 109.47259 * 59.99542 * 3 2 1
7 7 C 1.38809 * 120.00290 * 179.97438 * 2 1 3
8 8 H 1.08007 * 120.00158 * 197.38029 * 7 2 1
9 9 N 1.36941 * 120.00186 * 17.37867 * 7 2 1
10 10 C 1.46927 * 120.62489 * 27.65721 * 9 7 2
11 11 C 1.53200 * 108.76111 * 126.40559 * 10 9 7
12 12 C 1.53039 * 109.31092 * 54.65490 * 11 10 9
13 13 C 1.53040 * 109.53022 * 298.61238 * 12 11 10
14 14 H 1.09009 * 109.49705 * 301.42526 * 13 12 11
15 15 N 1.46496 * 109.50324 * 181.32578 * 13 12 11
16 16 C 1.34772 * 120.00306 * 155.00037 * 15 13 12
17 17 O 1.21580 * 120.00009 * 359.97438 * 16 15 13
18 18 C 1.47677 * 120.00158 * 180.02562 * 16 15 13
19 19 C 1.40215 * 120.49572 * 179.97438 * 18 16 15
20 20 C 1.38042 * 118.35138 * 179.97438 * 19 18 16
21 21 C 1.39144 * 119.25653 * 359.97438 * 20 19 18
22 22 N 1.39546 * 119.52812 * 179.97438 * 21 20 19
23 23 C 1.34881 * 126.84848 * 179.71369 * 22 21 20
24 24 N 1.30787 * 108.00397 * 179.83580 * 23 22 21
25 25 C 1.33322 * 109.85209 * 0.44848 * 24 23 22
26 26 N 1.30690 * 109.02731 * 359.72051 * 25 24 23
27 27 N 1.32430 * 120.94220 * 0.02562 * 21 20 19
28 28 C 1.31625 * 121.80668 * 359.71203 * 27 21 20
29 29 C 1.46914 * 120.63145 * 207.68085 * 9 7 2
30 30 H 0.96998 * 120.00359 * 0.02562 * 1 2 3
31 31 H 1.08995 * 109.58710 * 246.19755 * 10 9 7
32 32 H 1.08998 * 109.58751 * 6.62827 * 10 9 7
33 33 H 1.08994 * 109.50776 * 294.69361 * 11 10 9
34 34 H 1.08994 * 109.48272 * 174.59818 * 11 10 9
35 35 H 1.09000 * 109.45878 * 178.59534 * 12 11 10
36 36 H 1.09001 * 109.46168 * 58.62753 * 12 11 10
37 37 H 0.96997 * 119.99243 * 335.00030 * 15 13 12
38 38 H 1.07996 * 120.82806 * 359.95609 * 19 18 16
39 39 H 1.08000 * 120.37140 * 180.02562 * 20 19 18
40 40 H 1.07998 * 125.99468 * 359.97029 * 23 22 21
41 41 H 1.08004 * 125.48420 * 179.72096 * 25 24 23
42 42 H 1.08000 * 119.68921 * 180.27200 * 28 27 21
43 43 H 1.09007 * 109.58897 * 113.80283 * 29 9 7
44 44 H 1.08997 * 109.59275 * 353.37370 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8914 2.3964 -1.2126
6 1 1.8912 2.3966 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0534 -1.2233 0.2799
9 7 1.3726 -2.3612 -0.3532
10 6 0.2281 -2.3347 -1.2741
11 6 0.5014 -3.3049 -2.4278
12 6 0.8190 -4.6900 -1.8598
13 6 2.0746 -4.6101 -0.9885
14 1 2.9086 -4.2401 -1.5852
15 7 2.3962 -5.9423 -0.4707
16 6 3.6632 -6.2422 -0.1225
17 8 4.5394 -5.4073 -0.2384
18 6 3.9874 -7.5852 0.3990
19 6 5.3021 -7.9085 0.7639
20 6 5.5553 -9.1768 1.2466
21 6 4.5069 -10.0851 1.3550
22 7 4.7566 -11.3688 1.8418
23 6 3.8563 -12.3586 2.0123
24 7 4.4874 -13.4023 2.4844
25 6 5.7810 -13.1181 2.6374
26 7 5.9944 -11.8859 2.2577
27 7 3.2756 -9.7490 1.0018
28 6 2.9888 -8.5496 0.5417
29 6 1.8195 -3.6546 0.1814
30 1 -0.4850 0.8400 -0.0004
31 1 -0.6741 -2.6412 -0.7447
32 1 0.0988 -1.3264 -1.6675
33 1 1.3502 -2.9473 -3.0107
34 1 -0.3792 -3.3670 -3.0670
35 1 0.9895 -5.3882 -2.6793
36 1 -0.0202 -5.0363 -1.2565
37 1 1.6972 -6.6084 -0.3785
38 1 6.0969 -7.1835 0.6694
39 1 6.5559 -9.4605 1.5377
40 1 2.8000 -12.3002 1.7948
41 1 6.5317 -13.7970 3.0145
42 1 1.9717 -8.3108 0.2678
43 1 1.0470 -4.0687 0.8296
44 1 2.7401 -3.5172 0.7485
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001008114364.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:51
Heat of formation + Delta-G solvation = 108.908062 kcal
Electronic energy + Delta-G solvation = -28430.547114 eV
Core-core repulsion = 24385.224218 eV
Total energy + Delta-G solvation = -4045.322896 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.155 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-43.48937 -41.82382 -40.49972 -38.90844 -36.03907 -35.50760 -34.20125 -33.90213
-32.42877 -32.32519 -31.75034 -29.91669 -27.25310 -26.33755 -25.30849 -24.04734
-23.83632 -23.03540 -22.65849 -21.64266 -21.07366 -19.89194 -18.84857 -18.71738
-17.96014 -17.21647 -17.00578 -16.67980 -16.36985 -16.27581 -15.98512 -15.72781
-15.36505 -15.28477 -15.14365 -14.98290 -14.68199 -14.44942 -14.22482 -14.08086
-13.93556 -13.39739 -13.37451 -13.02837 -12.77815 -12.55692 -12.15828 -12.09489
-11.96569 -11.78210 -11.60042 -11.37044 -11.31364 -11.28440 -11.23980 -11.07756
-10.82940 -10.62183 -10.21555 -9.85454 -8.68943 -7.90639 -5.35409 -0.96470
-0.07892 0.55212 0.75027 1.43091 1.45353 1.56244 1.70117 1.81974
1.98555 2.49933 2.60440 2.91710 3.21199 3.23612 3.34790 3.43617
3.61931 3.70352 3.80570 3.91184 3.99580 4.06529 4.14030 4.27327
4.42489 4.50663 4.57506 4.63290 4.81079 4.85224 4.93632 4.96022
5.04794 5.09510 5.15081 5.17322 5.26568 5.30169 5.45313 5.56491
5.64732 5.68308 5.79000 6.27154 6.37080 6.49740 6.86434 7.12743
7.16777 7.83650 8.32269 9.14911
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.024838 B = 0.002001 C = 0.001921
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1127.037998 B =13986.392551 C =14568.725836
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C -0.045 4.045
3 Si 0.963 3.037
4 H -0.274 1.274
5 H -0.284 1.284
6 H -0.289 1.289
7 C -0.264 4.264
8 H 0.054 0.946
9 N -0.607 5.607
10 C 0.170 3.830
11 C -0.130 4.130
12 C -0.105 4.105
13 C 0.142 3.858
14 H 0.061 0.939
15 N -0.698 5.698
16 C 0.562 3.438
17 O -0.575 6.575
18 C -0.195 4.195
19 C 0.006 3.994
20 C -0.163 4.163
21 C 0.374 3.626
22 N -0.347 5.347
23 C 0.297 3.703
24 N -0.559 5.559
25 C 0.220 3.780
26 N -0.335 5.335
27 N -0.503 5.503
28 C 0.185 3.815
29 C 0.142 3.858
30 H 0.252 0.748
31 H 0.006 0.994
32 H 0.053 0.947
33 H 0.047 0.953
34 H 0.084 0.916
35 H 0.090 0.910
36 H 0.080 0.920
37 H 0.416 0.584
38 H 0.158 0.842
39 H 0.161 0.839
40 H 0.254 0.746
41 H 0.261 0.739
42 H 0.208 0.792
43 H 0.025 0.975
44 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.048 -26.546 -0.165 27.022
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.241 4.241
3 Si 0.791 3.209
4 H -0.199 1.199
5 H -0.211 1.211
6 H -0.216 1.216
7 C -0.394 4.394
8 H 0.071 0.929
9 N -0.331 5.331
10 C 0.045 3.955
11 C -0.170 4.170
12 C -0.143 4.143
13 C 0.036 3.964
14 H 0.080 0.920
15 N -0.350 5.350
16 C 0.349 3.651
17 O -0.454 6.454
18 C -0.201 4.201
19 C -0.021 4.021
20 C -0.185 4.185
21 C 0.146 3.854
22 N -0.132 5.132
23 C 0.001 3.999
24 N -0.284 5.284
25 C -0.082 4.082
26 N -0.160 5.160
27 N -0.216 5.216
28 C 0.025 3.975
29 C 0.015 3.985
30 H 0.061 0.939
31 H 0.025 0.975
32 H 0.071 0.929
33 H 0.066 0.934
34 H 0.103 0.897
35 H 0.109 0.891
36 H 0.098 0.902
37 H 0.255 0.745
38 H 0.176 0.824
39 H 0.179 0.821
40 H 0.270 0.730
41 H 0.277 0.723
42 H 0.225 0.775
43 H 0.043 0.957
44 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges 5.466 -26.428 -0.062 26.988
hybrid contribution 0.619 1.775 0.218 1.893
sum 6.086 -24.653 0.156 25.394
Atomic orbital electron populations
1.70165 1.06309 1.25875 1.55084 1.25696 0.96115 1.01154 1.01153
0.85281 0.78403 0.80104 0.77111 1.19867 1.21080 1.21634 1.19416
0.92592 0.86347 1.41078 0.92856 1.44233 1.36010 1.01544 1.51335
1.20741 0.87557 0.98208 0.89030 1.22016 1.01384 0.95390 0.98198
1.21631 0.95856 0.97604 0.99213 1.21311 0.98267 0.81493 0.95338
0.92050 1.45759 1.09156 1.15172 1.64867 1.18231 0.82818 0.86812
0.77250 1.90831 1.48345 1.50836 1.55433 1.20928 0.96441 0.95356
1.07355 1.21765 0.96396 0.95213 0.88725 1.21657 1.00881 0.92727
1.03261 1.18030 0.90888 0.82863 0.93593 1.47580 1.07609 1.09965
1.48069 1.27085 0.99615 0.81737 0.91413 1.70801 1.06516 1.27957
1.23158 1.27074 0.94125 0.91855 0.95138 1.78182 1.00937 1.13744
1.23116 1.66931 1.18490 1.21154 1.15001 1.23198 1.00238 0.84661
0.89365 1.21249 0.96622 0.86451 0.94134 0.93911 0.97546 0.92884
0.93448 0.89731 0.89116 0.90154 0.74502 0.82421 0.82098 0.73004
0.72337 0.77531 0.95739 0.95090
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.50 11.19 21.65 0.24 -54.26 16
2 C -0.05 -2.57 4.91 84.86 0.42 -2.15 16
3 Si 0.96 45.80 29.59 68.60 2.03 47.83 16
4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16
5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16
7 C -0.26 -15.03 9.59 84.03 0.81 -14.23 16
8 H 0.05 3.11 7.89 -2.91 -0.02 3.08 16
9 N -0.61 -30.63 2.99 -699.09 -2.09 -32.72 16
10 C 0.17 7.82 5.31 86.37 0.46 8.28 16
11 C -0.13 -4.37 6.08 30.67 0.19 -4.18 16
12 C -0.11 -2.74 5.35 30.62 0.16 -2.58 16
13 C 0.14 4.52 2.60 45.07 0.12 4.63 16
14 H 0.06 2.35 7.58 -2.38 -0.02 2.33 16
15 N -0.70 -15.91 5.03 -445.18 -2.24 -18.15 16
16 C 0.56 14.78 7.74 86.74 0.67 15.45 16
17 O -0.57 -21.04 16.08 -3.97 -0.06 -21.11 16
18 C -0.19 -3.72 5.89 -19.98 -0.12 -3.84 16
19 C 0.01 0.11 9.70 22.70 0.22 0.33 16
20 C -0.16 -2.81 9.70 22.44 0.22 -2.59 16
21 C 0.37 6.59 7.56 132.87 1.00 7.60 16
22 N -0.35 -6.11 3.80 -196.07 -0.75 -6.85 16
23 C 0.30 4.33 12.25 180.23 2.21 6.54 16
24 N -0.56 -9.09 11.19 -203.65 -2.28 -11.37 16
25 C 0.22 3.05 13.03 180.75 2.35 5.40 16
26 N -0.33 -5.99 11.99 -61.21 -0.73 -6.72 16
27 N -0.50 -7.74 9.86 -191.81 -1.89 -9.63 16
28 C 0.19 2.52 10.71 85.04 0.91 3.43 16
29 C 0.14 5.95 6.09 86.37 0.53 6.48 16
30 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16
31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16
32 H 0.05 2.82 6.04 -2.39 -0.01 2.80 16
33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16
35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16
36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16
37 H 0.42 5.67 6.66 -92.71 -0.62 5.05 16
38 H 0.16 3.00 7.73 -2.91 -0.02 2.98 16
39 H 0.16 2.54 7.71 -2.91 -0.02 2.52 16
40 H 0.25 2.01 8.06 -2.91 -0.02 1.99 16
41 H 0.26 1.26 8.06 -2.91 -0.02 1.24 16
42 H 0.21 1.24 6.41 -2.91 -0.02 1.22 16
43 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16
44 H 0.03 1.43 7.93 -2.39 -0.02 1.41 16
Total: -1.00 -77.80 370.78 2.80 -75.00
By element:
Atomic # 1 Polarization: 8.98 SS G_CDS: 0.43 Total: 9.41 kcal
Atomic # 6 Polarization: 18.42 SS G_CDS: 10.14 Total: 28.57 kcal
Atomic # 7 Polarization: -129.96 SS G_CDS: -9.74 Total: -139.70 kcal
Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.11 kcal
Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal
Total: -77.80 2.80 -75.00 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001008114364.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 183.908 kcal
(2) G-P(sol) polarization free energy of solvation -77.799 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.109 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.000 kcal
(6) G-S(sol) free energy of system = (1) + (5) 108.908 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds