Wall clock time and date at job start Sat Apr 11 2020 06:35:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86804 * 119.99950 * 2 1
4 4 H 1.48499 * 109.46816 * 269.99448 * 3 2 1
5 5 H 1.48501 * 109.46832 * 29.99411 * 3 2 1
6 6 H 1.48499 * 109.47337 * 149.99637 * 3 2 1
7 7 C 1.38810 * 120.00117 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00107 * 0.02562 * 7 2 1
9 9 N 1.36935 * 119.99944 * 180.02562 * 7 2 1
10 10 C 1.46507 * 120.00016 * 179.97438 * 9 7 2
11 11 C 1.53781 * 113.61483 * 154.99969 * 10 9 7
12 12 C 1.53775 * 87.07895 * 89.11629 * 11 10 9
13 13 C 1.53009 * 113.61195 * 139.98074 * 12 11 10
14 14 N 1.46497 * 109.47065 * 176.52774 * 13 12 11
15 15 C 1.34779 * 119.99724 * 179.97438 * 14 13 12
16 16 O 1.21570 * 120.00411 * 0.02562 * 15 14 13
17 17 C 1.47635 * 119.99620 * 179.97438 * 15 14 13
18 18 C 1.39625 * 120.19107 * 354.05014 * 17 15 14
19 19 C 1.37867 * 119.91766 * 179.97438 * 18 17 15
20 20 C 1.38508 * 120.29949 * 359.97438 * 19 18 17
21 21 C 1.38114 * 120.37958 * 0.02562 * 20 19 18
22 22 C 1.38703 * 120.07821 * 359.97438 * 21 20 19
23 23 N 1.39846 * 120.15309 * 179.97438 * 22 21 20
24 24 C 1.35152 * 127.39154 * 302.77378 * 23 22 21
25 25 N 1.30719 * 107.26296 * 179.97438 * 24 23 22
26 26 N 1.28417 * 110.65415 * 0.02562 * 25 24 23
27 27 N 1.28954 * 110.22263 * 359.74487 * 26 25 24
28 28 C 1.53784 * 87.17534 * 25.39042 * 12 11 10
29 29 H 0.96996 * 120.00277 * 0.02562 * 1 2 3
30 30 H 0.96998 * 120.00489 * 359.97438 * 9 7 2
31 31 H 1.09000 * 112.84447 * 23.79833 * 10 9 7
32 32 H 1.09002 * 113.60994 * 334.56661 * 11 10 9
33 33 H 1.09000 * 113.60912 * 203.66979 * 11 10 9
34 34 H 1.09002 * 113.61732 * 270.79822 * 12 11 10
35 35 H 1.08999 * 109.46774 * 56.52619 * 13 12 11
36 36 H 1.08999 * 109.46748 * 296.53071 * 13 12 11
37 37 H 0.97005 * 120.00015 * 0.02562 * 14 13 12
38 38 H 1.07993 * 120.03853 * 0.02562 * 18 17 15
39 39 H 1.08000 * 119.85161 * 179.72451 * 19 18 17
40 40 H 1.07999 * 119.80616 * 180.02562 * 20 19 18
41 41 H 1.07997 * 119.95604 * 180.02562 * 21 20 19
42 42 H 1.07998 * 126.37221 * 359.96584 * 24 23 22
43 43 H 1.09001 * 113.61301 * 89.15912 * 28 12 11
44 44 H 1.08998 * 113.61092 * 220.05412 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4978 2.0463 -1.4001
5 1 1.4475 2.6527 0.6999
6 1 3.5477 1.4403 0.7001
7 6 2.0102 -1.2021 0.0005
8 1 1.4703 -2.1375 0.0005
9 7 3.3796 -1.2021 0.0011
10 6 4.1122 -2.4708 0.0022
11 6 5.5263 -2.3662 -0.5928
12 6 6.0123 -2.0230 0.8252
13 6 7.3466 -2.6767 1.1907
14 7 7.7633 -2.2255 2.5207
15 6 8.9169 -2.6744 3.0538
16 8 9.6119 -3.4533 2.4308
17 6 9.3370 -2.2193 4.3940
18 6 8.6090 -1.2316 5.0603
19 6 9.0061 -0.8112 6.3118
20 6 10.1247 -1.3646 6.9126
21 6 10.8539 -2.3423 6.2646
22 6 10.4685 -2.7770 5.0051
23 7 11.2060 -3.7665 4.3474
24 6 12.5206 -3.7390 4.0351
25 7 12.7986 -4.8625 3.4274
26 7 11.7502 -5.5981 3.3335
27 7 10.7401 -5.0056 3.8735
28 6 4.7866 -2.7901 1.3488
29 1 -0.4850 0.8400 -0.0004
30 1 3.8646 -0.3621 0.0007
31 1 3.5280 -3.2972 -0.4028
32 1 5.6414 -1.5480 -1.3038
33 1 5.9126 -3.3132 -0.9696
34 1 5.9882 -0.9564 1.0489
35 1 8.1024 -2.3942 0.4579
36 1 7.2312 -3.7605 1.1943
37 1 7.2085 -1.6043 3.0180
38 1 7.7355 -0.7982 4.5962
39 1 8.4448 -0.0440 6.8244
40 1 10.4284 -1.0296 7.8934
41 1 11.7247 -2.7694 6.7396
42 1 13.2128 -2.9378 4.2479
43 1 4.9705 -3.8532 1.5039
44 1 4.3057 -2.3137 2.2030
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001091360092.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:40
Heat of formation + Delta-G solvation = 168.697029 kcal
Electronic energy + Delta-G solvation = -28664.443575 eV
Core-core repulsion = 24621.713323 eV
Total energy + Delta-G solvation = -4042.730252 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.155 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.27747 -40.78047 -39.29409 -38.46322 -35.63171 -34.76019 -33.38086 -32.40229
-32.04815 -30.72411 -30.62651 -27.80081 -25.44861 -25.24229 -24.52797 -23.56891
-22.92568 -22.52378 -21.77454 -20.90367 -19.30687 -18.65306 -17.87377 -17.68891
-16.96389 -16.38762 -16.20466 -15.84605 -15.62813 -15.23944 -15.12352 -14.95087
-14.52661 -14.12982 -14.00578 -13.62229 -13.57019 -13.12509 -12.97053 -12.82071
-12.56239 -12.47589 -12.24723 -12.11781 -11.66876 -11.44308 -11.38753 -11.15443
-10.98079 -10.66018 -10.57873 -10.34440 -10.24335 -10.00476 -9.84720 -9.73893
-9.61957 -9.53966 -9.19781 -8.97868 -7.37103 -5.85635 -3.22191 -0.09924
0.30266 0.98676 1.57266 2.17929 2.36015 2.79515 3.10356 3.26979
3.31218 3.37062 3.81545 3.94524 4.04586 4.22528 4.38160 4.49447
4.49820 4.55735 4.70051 4.82150 4.84548 4.97210 5.02491 5.04106
5.27058 5.32805 5.34882 5.39191 5.41935 5.45117 5.59972 5.67792
5.76617 5.80277 5.84086 6.06892 6.14369 6.17536 6.23211 6.41367
6.54380 6.65684 6.82034 7.20106 7.89332 7.92145 8.30399 8.33938
9.11386 9.83436 10.02623 11.32461
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.016124 B = 0.002387 C = 0.002159
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1736.084650 B =11729.651720 C =12963.806323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.005 3.995
3 Si 0.885 3.115
4 H -0.283 1.283
5 H -0.290 1.290
6 H -0.279 1.279
7 C -0.247 4.247
8 H 0.092 0.908
9 N -0.730 5.730
10 C 0.173 3.827
11 C -0.148 4.148
12 C -0.124 4.124
13 C 0.132 3.868
14 N -0.714 5.714
15 C 0.549 3.451
16 O -0.522 6.522
17 C -0.108 4.108
18 C -0.073 4.073
19 C -0.105 4.105
20 C -0.081 4.081
21 C -0.111 4.111
22 C 0.171 3.829
23 N -0.331 5.331
24 C 0.227 3.773
25 N -0.335 5.335
26 N -0.046 5.046
27 N -0.025 5.025
28 C -0.167 4.167
29 H 0.260 0.740
30 H 0.361 0.639
31 H 0.072 0.928
32 H 0.068 0.932
33 H 0.082 0.918
34 H 0.089 0.911
35 H 0.065 0.935
36 H 0.072 0.928
37 H 0.401 0.599
38 H 0.142 0.858
39 H 0.143 0.857
40 H 0.144 0.856
41 H 0.141 0.859
42 H 0.233 0.767
43 H 0.073 0.927
44 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.079 0.044 16.132 29.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.191 4.191
3 Si 0.715 3.285
4 H -0.210 1.210
5 H -0.217 1.217
6 H -0.205 1.205
7 C -0.377 4.377
8 H 0.110 0.890
9 N -0.370 5.370
10 C 0.061 3.939
11 C -0.188 4.188
12 C -0.143 4.143
13 C 0.010 3.990
14 N -0.366 5.366
15 C 0.334 3.666
16 O -0.398 6.398
17 C -0.114 4.114
18 C -0.093 4.093
19 C -0.123 4.123
20 C -0.099 4.099
21 C -0.131 4.131
22 C 0.078 3.922
23 N -0.123 5.123
24 C -0.071 4.071
25 N -0.182 5.182
26 N -0.041 5.041
27 N -0.010 5.010
28 C -0.208 4.208
29 H 0.071 0.929
30 H 0.194 0.806
31 H 0.090 0.910
32 H 0.086 0.914
33 H 0.101 0.899
34 H 0.108 0.892
35 H 0.084 0.916
36 H 0.090 0.910
37 H 0.236 0.764
38 H 0.160 0.840
39 H 0.161 0.839
40 H 0.161 0.839
41 H 0.159 0.841
42 H 0.249 0.751
43 H 0.092 0.908
44 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 25.004 -1.906 15.041 29.241
hybrid contribution 0.296 2.658 0.707 2.766
sum 25.300 0.752 15.748 29.810
Atomic orbital electron populations
1.69694 1.05088 1.25914 1.57143 1.24688 0.95254 0.97209 1.01900
0.86557 0.79036 0.85039 0.77858 1.21000 1.21665 1.20495 1.19117
0.80385 0.94869 1.43327 0.88996 1.42516 1.03968 1.01583 1.88913
1.21038 0.90093 0.89933 0.92815 1.23456 0.98773 1.01676 0.94852
1.22769 0.92561 0.99995 0.98975 1.21526 0.95975 0.99458 0.82069
1.45937 1.22459 1.48155 1.20031 1.17992 0.81909 0.81460 0.85221
1.90857 1.53412 1.33641 1.61897 1.20099 0.96596 0.98794 0.95867
1.21414 0.98574 0.94473 0.94800 1.21389 0.96528 0.99666 0.94735
1.21291 0.94077 0.94487 1.00093 1.21131 1.01656 0.98604 0.91755
1.17265 0.93341 0.89611 0.91988 1.48624 1.07820 1.14437 1.41409
1.27355 0.84869 0.99293 0.95584 1.74375 1.21865 1.02530 1.19462
1.78027 0.93171 1.21037 1.11895 1.82755 1.18186 0.88858 1.11196
1.23892 0.96376 0.98921 1.01566 0.92947 0.80564 0.90956 0.91367
0.89905 0.89245 0.91632 0.90995 0.76384 0.83997 0.83939 0.83869
0.84098 0.75056 0.90845 0.91311
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.55 13.97 55.49 0.78 -27.78 16
2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16
3 Si 0.88 21.22 27.74 -169.99 -4.71 16.51 16
4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
6 H -0.28 -6.16 6.52 56.52 0.37 -5.80 16
7 C -0.25 -6.74 10.45 -15.06 -0.16 -6.90 16
8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16
9 N -0.73 -16.37 5.11 -52.55 -0.27 -16.64 16
10 C 0.17 3.12 4.57 -67.03 -0.31 2.82 16
11 C -0.15 -2.15 7.39 -25.92 -0.19 -2.34 16
12 C -0.12 -1.64 3.62 -89.80 -0.33 -1.97 16
13 C 0.13 1.63 5.50 -4.04 -0.02 1.61 16
14 N -0.71 -7.81 5.50 -61.32 -0.34 -8.15 16
15 C 0.55 6.79 7.73 -12.42 -0.10 6.69 16
16 O -0.52 -8.43 13.20 5.30 0.07 -8.36 16
17 C -0.11 -0.99 5.89 -104.82 -0.62 -1.61 16
18 C -0.07 -0.44 9.52 -39.20 -0.37 -0.81 16
19 C -0.10 -0.40 10.03 -39.62 -0.40 -0.80 16
20 C -0.08 -0.26 10.03 -39.53 -0.40 -0.66 16
21 C -0.11 -0.54 9.81 -39.45 -0.39 -0.93 16
22 C 0.17 1.47 6.24 -83.30 -0.52 0.95 16
23 N -0.33 -3.65 2.61 -11.53 -0.03 -3.68 16
24 C 0.23 2.09 12.68 -90.09 -1.14 0.95 16
25 N -0.33 -4.38 12.15 29.65 0.36 -4.02 16
26 N -0.05 -0.72 13.39 60.35 0.81 0.09 16
27 N -0.02 -0.37 11.43 60.35 0.69 0.32 16
28 C -0.17 -2.53 7.44 -25.83 -0.19 -2.72 16
29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
30 H 0.36 7.91 5.76 -40.82 -0.24 7.67 16
31 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16
32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
33 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16
34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16
35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
36 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16
37 H 0.40 3.47 6.54 -40.82 -0.27 3.20 16
38 H 0.14 0.63 6.45 -52.49 -0.34 0.29 16
39 H 0.14 0.22 8.06 -52.49 -0.42 -0.20 16
40 H 0.14 0.07 8.06 -52.49 -0.42 -0.35 16
41 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16
42 H 0.23 0.78 8.06 -52.49 -0.42 0.35 16
43 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16
44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
LS Contribution 374.13 15.07 5.64 5.64
Total: -1.00 -37.16 374.13 -7.71 -44.87
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: -5.48 Total: 6.86 kcal
Atomic # 6 Polarization: -0.44 SS G_CDS: -5.22 Total: -5.66 kcal
Atomic # 7 Polarization: -61.85 SS G_CDS: 2.00 Total: -59.86 kcal
Atomic # 8 Polarization: -8.43 SS G_CDS: 0.07 Total: -8.36 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.51 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -37.16 -7.71 -44.87 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001091360092.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 213.567 kcal
(2) G-P(sol) polarization free energy of solvation -37.165 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.402 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.870 kcal
(6) G-S(sol) free energy of system = (1) + (5) 168.697 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds