Wall clock time and date at job start Sat Apr 11 2020 06:35:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86804 * 119.99950 * 2 1
4 4 H 1.48499 * 109.46816 * 269.99448 * 3 2 1
5 5 H 1.48501 * 109.46832 * 29.99411 * 3 2 1
6 6 H 1.48499 * 109.47337 * 149.99637 * 3 2 1
7 7 C 1.38810 * 120.00117 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00107 * 0.02562 * 7 2 1
9 9 N 1.36935 * 119.99944 * 180.02562 * 7 2 1
10 10 C 1.46507 * 120.00016 * 179.97438 * 9 7 2
11 11 C 1.53781 * 113.61483 * 154.99969 * 10 9 7
12 12 C 1.53775 * 87.07895 * 89.11629 * 11 10 9
13 13 C 1.53009 * 113.61195 * 139.98074 * 12 11 10
14 14 N 1.46497 * 109.47065 * 176.52774 * 13 12 11
15 15 C 1.34779 * 119.99724 * 179.97438 * 14 13 12
16 16 O 1.21570 * 120.00411 * 0.02562 * 15 14 13
17 17 C 1.47635 * 119.99620 * 179.97438 * 15 14 13
18 18 C 1.39625 * 120.19107 * 354.05014 * 17 15 14
19 19 C 1.37867 * 119.91766 * 179.97438 * 18 17 15
20 20 C 1.38508 * 120.29949 * 359.97438 * 19 18 17
21 21 C 1.38114 * 120.37958 * 0.02562 * 20 19 18
22 22 C 1.38703 * 120.07821 * 359.97438 * 21 20 19
23 23 N 1.39846 * 120.15309 * 179.97438 * 22 21 20
24 24 C 1.35152 * 127.39154 * 302.77378 * 23 22 21
25 25 N 1.30719 * 107.26296 * 179.97438 * 24 23 22
26 26 N 1.28417 * 110.65415 * 0.02562 * 25 24 23
27 27 N 1.28954 * 110.22263 * 359.74487 * 26 25 24
28 28 C 1.53784 * 87.17534 * 25.39042 * 12 11 10
29 29 H 0.96996 * 120.00277 * 0.02562 * 1 2 3
30 30 H 0.96998 * 120.00489 * 359.97438 * 9 7 2
31 31 H 1.09000 * 112.84447 * 23.79833 * 10 9 7
32 32 H 1.09002 * 113.60994 * 334.56661 * 11 10 9
33 33 H 1.09000 * 113.60912 * 203.66979 * 11 10 9
34 34 H 1.09002 * 113.61732 * 270.79822 * 12 11 10
35 35 H 1.08999 * 109.46774 * 56.52619 * 13 12 11
36 36 H 1.08999 * 109.46748 * 296.53071 * 13 12 11
37 37 H 0.97005 * 120.00015 * 0.02562 * 14 13 12
38 38 H 1.07993 * 120.03853 * 0.02562 * 18 17 15
39 39 H 1.08000 * 119.85161 * 179.72451 * 19 18 17
40 40 H 1.07999 * 119.80616 * 180.02562 * 20 19 18
41 41 H 1.07997 * 119.95604 * 180.02562 * 21 20 19
42 42 H 1.07998 * 126.37221 * 359.96584 * 24 23 22
43 43 H 1.09001 * 113.61301 * 89.15912 * 28 12 11
44 44 H 1.08998 * 113.61092 * 220.05412 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4978 2.0463 -1.4001
5 1 1.4475 2.6527 0.6999
6 1 3.5477 1.4403 0.7001
7 6 2.0102 -1.2021 0.0005
8 1 1.4703 -2.1375 0.0005
9 7 3.3796 -1.2021 0.0011
10 6 4.1122 -2.4708 0.0022
11 6 5.5263 -2.3662 -0.5928
12 6 6.0123 -2.0230 0.8252
13 6 7.3466 -2.6767 1.1907
14 7 7.7633 -2.2255 2.5207
15 6 8.9169 -2.6744 3.0538
16 8 9.6119 -3.4533 2.4308
17 6 9.3370 -2.2193 4.3940
18 6 8.6090 -1.2316 5.0603
19 6 9.0061 -0.8112 6.3118
20 6 10.1247 -1.3646 6.9126
21 6 10.8539 -2.3423 6.2646
22 6 10.4685 -2.7770 5.0051
23 7 11.2060 -3.7665 4.3474
24 6 12.5206 -3.7390 4.0351
25 7 12.7986 -4.8625 3.4274
26 7 11.7502 -5.5981 3.3335
27 7 10.7401 -5.0056 3.8735
28 6 4.7866 -2.7901 1.3488
29 1 -0.4850 0.8400 -0.0004
30 1 3.8646 -0.3621 0.0007
31 1 3.5280 -3.2972 -0.4028
32 1 5.6414 -1.5480 -1.3038
33 1 5.9126 -3.3132 -0.9696
34 1 5.9882 -0.9564 1.0489
35 1 8.1024 -2.3942 0.4579
36 1 7.2312 -3.7605 1.1943
37 1 7.2085 -1.6043 3.0180
38 1 7.7355 -0.7982 4.5962
39 1 8.4448 -0.0440 6.8244
40 1 10.4284 -1.0296 7.8934
41 1 11.7247 -2.7694 6.7396
42 1 13.2128 -2.9378 4.2479
43 1 4.9705 -3.8532 1.5039
44 1 4.3057 -2.3137 2.2030
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001091360092.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:35:39
Heat of formation + Delta-G solvation = 142.659241 kcal
Electronic energy + Delta-G solvation = -28665.572659 eV
Core-core repulsion = 24621.713323 eV
Total energy + Delta-G solvation = -4043.859335 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.155 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-44.11194 -41.50430 -40.32976 -39.40139 -36.46085 -35.87222 -35.01862 -33.24221
-32.93272 -32.30803 -31.20756 -28.93929 -26.51544 -26.23375 -25.48856 -24.90324
-23.86642 -23.35997 -22.83807 -21.70414 -20.33887 -19.69312 -19.58495 -18.57411
-17.71446 -17.21729 -17.02601 -16.76506 -16.55218 -16.25755 -16.09382 -15.81798
-15.63575 -15.25459 -15.13231 -14.67477 -14.63770 -14.49362 -14.13673 -13.76410
-13.53624 -13.39680 -13.13485 -13.07733 -13.03117 -12.72767 -12.68595 -12.19887
-12.12240 -12.00759 -11.89367 -11.69247 -11.61369 -11.47696 -11.08490 -10.98001
-10.82872 -10.35681 -10.11543 -9.99256 -9.31489 -8.02936 -5.37425 -0.65634
-0.10833 0.28431 0.92684 1.30533 1.36431 1.42294 1.49093 1.71083
1.99219 2.48054 2.54494 3.26720 3.26916 3.43522 3.47618 3.52729
3.67695 3.74178 3.77880 3.90378 3.95313 4.05031 4.18314 4.22225
4.27557 4.30960 4.35122 4.46131 4.62238 4.64668 4.72332 4.88432
4.92260 4.98691 5.03776 5.14571 5.18332 5.26335 5.28522 5.40308
5.40803 5.48820 5.73885 5.79610 6.21859 6.37227 7.04912 7.06958
7.41768 7.82703 8.02588 9.18566
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.016124 B = 0.002387 C = 0.002159
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1736.084650 B =11729.651720 C =12963.806323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.985 5.985
2 C -0.066 4.066
3 Si 0.958 3.042
4 H -0.281 1.281
5 H -0.296 1.296
6 H -0.245 1.245
7 C -0.234 4.234
8 H 0.054 0.946
9 N -0.732 5.732
10 C 0.147 3.853
11 C -0.135 4.135
12 C -0.102 4.102
13 C 0.143 3.857
14 N -0.708 5.708
15 C 0.543 3.457
16 O -0.568 6.568
17 C -0.135 4.135
18 C -0.074 4.074
19 C -0.096 4.096
20 C -0.064 4.064
21 C -0.101 4.101
22 C 0.139 3.861
23 N -0.324 5.324
24 C 0.241 3.759
25 N -0.366 5.366
26 N -0.080 5.080
27 N -0.064 5.064
28 C -0.155 4.155
29 H 0.258 0.742
30 H 0.368 0.632
31 H 0.055 0.945
32 H 0.070 0.930
33 H 0.101 0.899
34 H 0.096 0.904
35 H 0.063 0.937
36 H 0.059 0.941
37 H 0.413 0.587
38 H 0.154 0.846
39 H 0.174 0.826
40 H 0.182 0.818
41 H 0.164 0.836
42 H 0.288 0.712
43 H 0.085 0.915
44 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 27.852 2.889 18.830 33.744
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.635 5.635
2 C -0.257 4.257
3 Si 0.785 3.215
4 H -0.208 1.208
5 H -0.223 1.223
6 H -0.169 1.169
7 C -0.365 4.365
8 H 0.072 0.928
9 N -0.374 5.374
10 C 0.038 3.962
11 C -0.174 4.174
12 C -0.121 4.121
13 C 0.019 3.981
14 N -0.360 5.360
15 C 0.330 3.670
16 O -0.448 6.448
17 C -0.140 4.140
18 C -0.093 4.093
19 C -0.114 4.114
20 C -0.082 4.082
21 C -0.121 4.121
22 C 0.047 3.953
23 N -0.116 5.116
24 C -0.056 4.056
25 N -0.214 5.214
26 N -0.075 5.075
27 N -0.050 5.050
28 C -0.195 4.195
29 H 0.067 0.933
30 H 0.202 0.798
31 H 0.074 0.926
32 H 0.089 0.911
33 H 0.119 0.881
34 H 0.114 0.886
35 H 0.081 0.919
36 H 0.078 0.922
37 H 0.250 0.750
38 H 0.171 0.829
39 H 0.191 0.809
40 H 0.199 0.801
41 H 0.182 0.818
42 H 0.303 0.697
43 H 0.103 0.897
44 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 27.811 0.927 17.768 33.015
hybrid contribution -0.606 1.759 -0.032 1.861
sum 27.206 2.686 17.735 32.587
Atomic orbital electron populations
1.69892 1.07291 1.26781 1.59526 1.25561 0.96154 1.01477 1.02540
0.85368 0.78814 0.79258 0.78056 1.20758 1.22260 1.16881 1.19049
0.82585 0.93437 1.41450 0.92787 1.42397 1.02220 1.03399 1.89344
1.21343 0.91464 0.87897 0.95532 1.23357 0.95553 1.02860 0.95627
1.22579 0.92006 1.00017 0.97518 1.21273 0.95242 0.98596 0.82982
1.45833 1.22480 1.48145 1.19521 1.18581 0.81464 0.80612 0.86315
1.90841 1.54774 1.35735 1.63412 1.19973 0.98135 1.01071 0.94836
1.21621 0.98527 0.93565 0.95631 1.21814 0.96516 0.99481 0.93593
1.21792 0.92797 0.92625 1.01035 1.21454 1.02296 0.98396 0.90002
1.17732 0.94034 0.89922 0.93583 1.48702 1.08447 1.13712 1.40749
1.28322 0.84961 0.99059 0.93218 1.74255 1.21953 1.04108 1.21131
1.77984 0.93959 1.22456 1.13146 1.82630 1.18872 0.91001 1.12481
1.23725 0.96578 0.99983 0.99206 0.93305 0.79845 0.92638 0.91147
0.88056 0.88571 0.91895 0.92244 0.74974 0.82876 0.80895 0.80065
0.81830 0.69738 0.89655 0.92356
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -62.21 13.97 21.65 0.30 -61.91 16
2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16
3 Si 0.96 43.43 27.74 68.60 1.90 45.34 16
4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
5 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16
6 H -0.24 -9.59 6.52 99.48 0.65 -8.94 16
7 C -0.23 -13.04 10.45 84.03 0.88 -12.16 16
8 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16
9 N -0.73 -32.36 5.11 -320.16 -1.64 -34.00 16
10 C 0.15 5.25 4.57 45.57 0.21 5.46 16
11 C -0.13 -3.67 7.39 31.12 0.23 -3.44 16
12 C -0.10 -2.51 3.62 -10.27 -0.04 -2.54 16
13 C 0.14 3.35 5.50 86.38 0.47 3.82 16
14 N -0.71 -14.62 5.50 -466.17 -2.57 -17.18 16
15 C 0.54 13.22 7.73 86.72 0.67 13.89 16
16 O -0.57 -18.84 13.20 -3.94 -0.05 -18.89 16
17 C -0.14 -2.26 5.89 -19.99 -0.12 -2.38 16
18 C -0.07 -0.65 9.52 22.52 0.21 -0.44 16
19 C -0.10 -0.26 10.03 22.25 0.22 -0.04 16
20 C -0.06 -0.07 10.03 22.30 0.22 0.15 16
21 C -0.10 -0.59 9.81 22.35 0.22 -0.37 16
22 C 0.14 2.13 6.24 38.44 0.24 2.37 16
23 N -0.32 -6.97 2.61 -190.39 -0.50 -7.47 16
24 C 0.24 4.15 12.68 180.16 2.28 6.43 16
25 N -0.37 -9.71 12.15 -60.09 -0.73 -10.44 16
26 N -0.08 -2.62 13.39 37.02 0.50 -2.12 16
27 N -0.06 -2.00 11.43 37.02 0.42 -1.58 16
28 C -0.15 -4.52 7.44 31.18 0.23 -4.29 16
29 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16
30 H 0.37 15.26 5.76 -92.71 -0.53 14.73 16
31 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16
32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
33 H 0.10 2.42 8.10 -2.39 -0.02 2.40 16
34 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16
35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16
36 H 0.06 1.57 7.87 -2.39 -0.02 1.55 16
37 H 0.41 6.29 6.54 -92.70 -0.61 5.68 16
38 H 0.15 0.87 6.45 -2.91 -0.02 0.85 16
39 H 0.17 -0.52 8.06 -2.91 -0.02 -0.54 16
40 H 0.18 -1.09 8.06 -2.91 -0.02 -1.11 16
41 H 0.16 0.17 8.06 -2.91 -0.02 0.15 16
42 H 0.29 0.98 8.06 -2.91 -0.02 0.95 16
43 H 0.08 2.31 7.92 -2.39 -0.02 2.29 16
44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
Total: -1.00 -88.09 374.13 3.91 -84.17
By element:
Atomic # 1 Polarization: 21.06 SS G_CDS: -0.14 Total: 20.92 kcal
Atomic # 6 Polarization: -3.25 SS G_CDS: 6.41 Total: 3.16 kcal
Atomic # 7 Polarization: -130.50 SS G_CDS: -4.21 Total: -134.70 kcal
Atomic # 8 Polarization: -18.84 SS G_CDS: -0.05 Total: -18.89 kcal
Atomic # 14 Polarization: 43.43 SS G_CDS: 1.90 Total: 45.34 kcal
Total: -88.09 3.91 -84.17 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001091360092.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 226.834 kcal
(2) G-P(sol) polarization free energy of solvation -88.088 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.175 kcal
(6) G-S(sol) free energy of system = (1) + (5) 142.659 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds