Wall clock time and date at job start Sat Apr 11 2020 06:37:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86802 * 119.99945 * 2 1
4 4 H 1.48497 * 109.46937 * 180.02562 * 3 2 1
5 5 H 1.48494 * 109.47215 * 300.00016 * 3 2 1
6 6 H 1.48494 * 109.47030 * 60.00139 * 3 2 1
7 7 C 1.37873 * 119.99978 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00063 * 180.02562 * 7 2 1
9 9 C 1.50703 * 120.00257 * 359.97438 * 7 2 1
10 10 H 1.08999 * 110.81239 * 56.66823 * 9 7 2
11 11 C 1.54890 * 110.75796 * 293.33369 * 9 7 2
12 12 C 1.54259 * 104.19578 * 203.74018 * 11 9 7
13 13 C 1.53878 * 106.60044 * 23.60930 * 12 11 9
14 14 H 1.09005 * 110.06919 * 240.69763 * 13 12 11
15 15 N 1.46494 * 110.03670 * 119.28771 * 13 12 11
16 16 C 1.34770 * 120.00370 * 87.82760 * 15 13 12
17 17 O 1.21592 * 120.00104 * 0.02562 * 16 15 13
18 18 N 1.34783 * 120.00264 * 180.02562 * 16 15 13
19 19 C 1.39954 * 120.00200 * 174.68886 * 18 16 15
20 20 C 1.38950 * 120.01533 * 146.40468 * 19 18 16
21 21 C 1.38174 * 120.16946 * 179.69374 * 20 19 18
22 22 C 1.38092 * 120.18536 * 0.60130 * 21 20 19
23 23 C 1.39307 * 120.02665 * 359.67847 * 22 21 20
24 24 C 1.48473 * 120.08626 * 180.02562 * 23 22 21
25 25 N 1.34050 * 126.67496 * 180.02562 * 24 23 22
26 26 N 1.28981 * 107.26783 * 180.02562 * 25 24 23
27 27 N 1.28729 * 108.94605 * 359.97438 * 26 25 24
28 28 H 0.97001 * 125.34585 * 180.02562 * 27 26 25
29 29 N 1.28878 * 109.31444 * 359.73087 * 27 26 25
30 30 C 1.38650 * 120.01031 * 326.67685 * 19 18 16
31 31 C 1.54265 * 106.59760 * 359.97438 * 13 12 11
32 32 H 0.96996 * 119.99679 * 0.02562 * 1 2 3
33 33 H 1.09002 * 110.48276 * 322.41685 * 11 9 7
34 34 H 1.09003 * 110.48585 * 85.05955 * 11 9 7
35 35 H 1.09006 * 110.03386 * 264.32505 * 12 11 9
36 36 H 1.08997 * 110.03285 * 142.89011 * 12 11 9
37 37 H 0.97003 * 119.99449 * 267.83680 * 15 13 12
38 38 H 0.96997 * 119.99654 * 354.68854 * 18 16 15
39 39 H 1.07998 * 119.91307 * 359.97438 * 20 19 18
40 40 H 1.07994 * 119.90435 * 180.30093 * 21 20 19
41 41 H 1.08009 * 119.98463 * 179.69577 * 22 21 20
42 42 H 1.08003 * 120.09634 * 359.97438 * 30 19 18
43 43 H 1.08996 * 110.48896 * 217.71452 * 31 13 12
44 44 H 1.08998 * 110.59914 * 95.12579 * 31 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8904 2.3964 -1.2124
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2510 -2.4992 -0.0005
10 1 0.5722 -2.5545 -0.8515
11 6 0.4803 -2.6881 1.3296
12 6 0.2972 -4.2153 1.4471
13 6 1.4102 -4.8579 0.6010
14 1 0.9739 -5.4599 -0.1961
15 7 2.2664 -5.6919 1.4480
16 6 1.9473 -6.9833 1.6646
17 8 0.9489 -7.4563 1.1566
18 7 2.7347 -7.7505 2.4443
19 6 2.3465 -9.0575 2.7600
20 6 3.3070 -10.0497 2.9149
21 6 2.9277 -11.3397 3.2328
22 6 1.5915 -11.6528 3.3860
23 6 0.6215 -10.6656 3.2269
24 6 -0.8155 -11.0006 3.3919
25 7 -1.8527 -10.1604 3.2692
26 7 -2.9255 -10.8417 3.4894
27 7 -2.6014 -12.0618 3.7415
28 1 -3.2243 -12.7782 3.9407
29 7 -1.3198 -12.1834 3.6817
30 6 1.0030 -9.3642 2.9128
31 6 2.2305 -3.6987 -0.0017
32 1 -0.4849 0.8400 -0.0004
33 1 1.0658 -2.3085 2.1670
34 1 -0.4883 -2.1901 1.2833
35 1 -0.6801 -4.5050 1.0607
36 1 0.3941 -4.5239 2.4880
37 1 3.0630 -5.3147 1.8530
38 1 3.5705 -7.3967 2.7866
39 1 4.3529 -9.8108 2.7909
40 1 3.6781 -12.1064 3.3569
41 1 1.2983 -12.6634 3.6297
42 1 0.2546 -8.5954 2.7889
43 1 2.5394 -3.9386 -1.0191
44 1 3.0999 -3.4811 0.6187
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001606351172.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:32
Heat of formation + Delta-G solvation = 116.135294 kcal
Electronic energy + Delta-G solvation = -28325.380917 eV
Core-core repulsion = 24280.371417 eV
Total energy + Delta-G solvation = -4045.009500 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.155 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-44.63329 -40.67486 -38.99677 -37.21633 -35.06615 -34.45829 -33.74984 -33.45785
-31.98717 -30.84581 -29.60192 -28.12667 -26.87745 -24.96310 -24.76569 -23.93689
-22.87837 -21.84358 -20.80122 -19.68081 -19.54110 -19.18264 -18.19759 -17.64932
-17.31972 -16.57450 -16.26320 -15.61651 -15.26346 -15.07736 -14.62210 -14.39941
-14.22938 -14.11805 -13.96228 -13.60955 -13.21273 -12.63756 -12.54639 -12.33474
-12.05639 -11.77585 -11.74262 -11.55870 -11.33069 -11.27398 -11.11262 -11.02803
-10.92808 -10.54058 -10.37457 -10.28317 -10.00717 -9.82702 -9.54134 -9.22090
-8.93024 -8.81179 -8.69300 -8.36834 -8.19072 -6.00567 -4.03764 0.49154
1.01045 1.18163 2.02138 2.15374 2.64791 3.21498 3.29571 3.38036
3.40686 3.48070 3.70104 4.00830 4.28575 4.44300 4.70958 4.81580
4.95835 5.14933 5.20965 5.31538 5.34218 5.34766 5.52181 5.68973
5.73559 5.84100 6.03195 6.12043 6.15801 6.24446 6.29716 6.34215
6.36795 6.57610 6.67459 6.75384 6.81706 6.89595 6.92517 6.98141
7.28183 7.36046 7.71242 7.87650 7.96961 8.02495 8.04582 8.43277
8.64915 8.99049 9.60418 11.09093
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.018175 B = 0.002116 C = 0.001927
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1540.223386 B =13228.129818 C =14529.817882
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.062 3.938
3 Si 0.889 3.111
4 H -0.274 1.274
5 H -0.285 1.285
6 H -0.285 1.285
7 C -0.513 4.513
8 H 0.056 0.944
9 C 0.052 3.948
10 H 0.036 0.964
11 C -0.103 4.103
12 C -0.135 4.135
13 C 0.155 3.845
14 H 0.082 0.918
15 N -0.726 5.726
16 C 0.697 3.303
17 O -0.570 6.570
18 N -0.692 5.692
19 C 0.174 3.826
20 C -0.131 4.131
21 C -0.102 4.102
22 C -0.103 4.103
23 C -0.002 4.002
24 C 0.223 3.777
25 N -0.257 5.257
26 N -0.049 5.049
27 N -0.231 5.231
28 H 0.474 0.526
29 N -0.297 5.297
30 C -0.079 4.079
31 C -0.121 4.121
32 H 0.259 0.741
33 H 0.046 0.954
34 H 0.066 0.934
35 H 0.058 0.942
36 H 0.050 0.950
37 H 0.395 0.605
38 H 0.407 0.593
39 H 0.130 0.870
40 H 0.133 0.867
41 H 0.131 0.869
42 H 0.153 0.847
43 H 0.054 0.946
44 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.970 -25.921 9.895 28.028
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.526 5.526
2 C -0.140 4.140
3 Si 0.717 3.283
4 H -0.199 1.199
5 H -0.211 1.211
6 H -0.211 1.211
7 C -0.552 4.552
8 H 0.074 0.926
9 C 0.033 3.967
10 H 0.054 0.946
11 C -0.141 4.141
12 C -0.174 4.174
13 C 0.051 3.949
14 H 0.101 0.899
15 N -0.379 5.379
16 C 0.398 3.602
17 O -0.446 6.446
18 N -0.339 5.339
19 C 0.079 3.921
20 C -0.153 4.153
21 C -0.121 4.121
22 C -0.125 4.125
23 C -0.006 4.006
24 C -0.057 4.057
25 N -0.130 5.130
26 N -0.044 5.044
27 N -0.077 5.077
28 H 0.328 0.672
29 N -0.149 5.149
30 C -0.101 4.101
31 C -0.159 4.159
32 H 0.069 0.931
33 H 0.065 0.935
34 H 0.084 0.916
35 H 0.076 0.924
36 H 0.069 0.931
37 H 0.229 0.771
38 H 0.243 0.757
39 H 0.148 0.852
40 H 0.151 0.849
41 H 0.149 0.851
42 H 0.171 0.829
43 H 0.072 0.928
44 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 2.201 -25.969 9.381 27.699
hybrid contribution 1.227 0.739 0.514 1.522
sum 3.428 -25.230 9.895 27.317
Atomic orbital electron populations
1.69969 1.05875 1.26378 1.50357 1.24987 0.94825 0.99030 0.95110
0.86593 0.80107 0.84068 0.77541 1.19851 1.21093 1.21116 1.21120
0.92740 0.90406 1.50900 0.92621 1.19556 0.92362 0.90890 0.93898
0.94606 1.22344 1.01477 0.90507 0.99797 1.22655 0.97592 0.98688
0.98438 1.21823 0.90775 0.90678 0.91613 0.89947 1.45579 1.29937
1.08579 1.53814 1.16058 0.83153 0.81647 0.79362 1.90967 1.27200
1.72774 1.53677 1.42711 1.25512 1.12302 1.53420 1.17290 0.92784
0.83869 0.98203 1.21047 0.99156 0.92221 1.02900 1.20800 0.95534
0.95904 0.99856 1.21067 0.92210 0.98896 1.00279 1.17026 0.85057
0.94197 1.04313 1.23672 0.96286 0.85127 1.00603 1.76229 0.94312
1.25415 1.17067 1.78978 1.21790 0.90440 1.13207 1.47741 1.04864
1.10529 1.44523 0.67172 1.74875 0.93024 1.24668 1.22286 1.21263
0.95931 0.96252 0.96677 1.22768 0.99112 0.95186 0.98884 0.93088
0.93506 0.91567 0.92370 0.93125 0.77110 0.75717 0.85200 0.84932
0.85059 0.82937 0.92759 0.92117
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.29 12.42 55.43 0.69 -24.60 16
2 C 0.06 1.70 5.36 -17.82 -0.10 1.60 16
3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16
4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16
5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
7 C -0.51 -13.62 8.49 -34.44 -0.29 -13.91 16
8 H 0.06 1.45 7.77 -52.48 -0.41 1.04 16
9 C 0.05 1.24 2.73 -89.79 -0.24 1.00 16
10 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16
11 C -0.10 -2.34 5.76 -25.08 -0.14 -2.48 16
12 C -0.13 -2.62 6.59 -25.61 -0.17 -2.79 16
13 C 0.15 2.76 3.25 -66.81 -0.22 2.55 16
14 H 0.08 1.58 7.56 -51.93 -0.39 1.18 16
15 N -0.73 -10.45 4.99 -57.58 -0.29 -10.74 16
16 C 0.70 10.49 8.30 -86.92 -0.72 9.77 16
17 O -0.57 -10.88 13.68 5.28 0.07 -10.81 16
18 N -0.69 -7.63 5.35 -14.25 -0.08 -7.70 16
19 C 0.17 1.99 6.28 -83.73 -0.53 1.47 16
20 C -0.13 -1.11 9.95 -39.34 -0.39 -1.50 16
21 C -0.10 -0.78 10.03 -39.66 -0.40 -1.18 16
22 C -0.10 -0.95 9.69 -39.24 -0.38 -1.33 16
23 C 0.00 -0.02 5.87 -104.92 -0.62 -0.64 16
24 C 0.22 2.83 7.94 -156.30 -1.24 1.59 16
25 N -0.26 -3.70 12.23 32.16 0.39 -3.31 16
26 N -0.05 -0.57 13.47 60.35 0.81 0.24 16
27 N -0.23 -1.85 7.90 60.35 0.48 -1.37 16
28 H 0.47 1.29 8.96 -340.36 -3.05 -1.76 16
29 N -0.30 -3.01 12.08 32.17 0.39 -2.63 16
30 C -0.08 -1.06 8.31 -39.07 -0.32 -1.39 16
31 C -0.12 -2.33 5.94 -25.09 -0.15 -2.48 16
32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
33 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16
34 H 0.07 1.66 7.64 -51.93 -0.40 1.26 16
35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
36 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16
37 H 0.39 4.57 8.38 -40.82 -0.34 4.22 16
38 H 0.41 2.99 8.83 -40.82 -0.36 2.63 16
39 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16
40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16
41 H 0.13 1.00 7.88 -52.48 -0.41 0.58 16
42 H 0.15 2.51 6.24 -52.48 -0.33 2.18 16
43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
44 H 0.06 1.10 7.63 -51.93 -0.40 0.71 16
LS Contribution 373.15 15.07 5.62 5.62
Total: -1.00 -34.30 373.15 -11.00 -45.30
By element:
Atomic # 1 Polarization: 11.98 SS G_CDS: -8.17 Total: 3.81 kcal
Atomic # 6 Polarization: -3.82 SS G_CDS: -5.91 Total: -9.73 kcal
Atomic # 7 Polarization: -52.51 SS G_CDS: 2.40 Total: -50.11 kcal
Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -34.30 -11.00 -45.30 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001606351172.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 161.436 kcal
(2) G-P(sol) polarization free energy of solvation -34.297 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.139 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) 116.135 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds