Wall clock time and date at job start Sat Apr 11 2020 06:37:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86802 * 119.99945 * 2 1
4 4 H 1.48497 * 109.46937 * 180.02562 * 3 2 1
5 5 H 1.48494 * 109.47215 * 300.00016 * 3 2 1
6 6 H 1.48494 * 109.47030 * 60.00139 * 3 2 1
7 7 C 1.37873 * 119.99978 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00063 * 180.02562 * 7 2 1
9 9 C 1.50703 * 120.00257 * 359.97438 * 7 2 1
10 10 H 1.08999 * 110.81239 * 56.66823 * 9 7 2
11 11 C 1.54890 * 110.75796 * 293.33369 * 9 7 2
12 12 C 1.54259 * 104.19578 * 203.74018 * 11 9 7
13 13 C 1.53878 * 106.60044 * 23.60930 * 12 11 9
14 14 H 1.09005 * 110.06919 * 240.69763 * 13 12 11
15 15 N 1.46494 * 110.03670 * 119.28771 * 13 12 11
16 16 C 1.34770 * 120.00370 * 87.82760 * 15 13 12
17 17 O 1.21592 * 120.00104 * 0.02562 * 16 15 13
18 18 N 1.34783 * 120.00264 * 180.02562 * 16 15 13
19 19 C 1.39954 * 120.00200 * 174.68886 * 18 16 15
20 20 C 1.38950 * 120.01533 * 146.40468 * 19 18 16
21 21 C 1.38174 * 120.16946 * 179.69374 * 20 19 18
22 22 C 1.38092 * 120.18536 * 0.60130 * 21 20 19
23 23 C 1.39307 * 120.02665 * 359.67847 * 22 21 20
24 24 C 1.48473 * 120.08626 * 180.02562 * 23 22 21
25 25 N 1.34050 * 126.67496 * 180.02562 * 24 23 22
26 26 N 1.28981 * 107.26783 * 180.02562 * 25 24 23
27 27 N 1.28729 * 108.94605 * 359.97438 * 26 25 24
28 28 H 0.97001 * 125.34585 * 180.02562 * 27 26 25
29 29 N 1.28878 * 109.31444 * 359.73087 * 27 26 25
30 30 C 1.38650 * 120.01031 * 326.67685 * 19 18 16
31 31 C 1.54265 * 106.59760 * 359.97438 * 13 12 11
32 32 H 0.96996 * 119.99679 * 0.02562 * 1 2 3
33 33 H 1.09002 * 110.48276 * 322.41685 * 11 9 7
34 34 H 1.09003 * 110.48585 * 85.05955 * 11 9 7
35 35 H 1.09006 * 110.03386 * 264.32505 * 12 11 9
36 36 H 1.08997 * 110.03285 * 142.89011 * 12 11 9
37 37 H 0.97003 * 119.99449 * 267.83680 * 15 13 12
38 38 H 0.96997 * 119.99654 * 354.68854 * 18 16 15
39 39 H 1.07998 * 119.91307 * 359.97438 * 20 19 18
40 40 H 1.07994 * 119.90435 * 180.30093 * 21 20 19
41 41 H 1.08009 * 119.98463 * 179.69577 * 22 21 20
42 42 H 1.08003 * 120.09634 * 359.97438 * 30 19 18
43 43 H 1.08996 * 110.48896 * 217.71452 * 31 13 12
44 44 H 1.08998 * 110.59914 * 95.12579 * 31 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8904 2.3964 -1.2124
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2510 -2.4992 -0.0005
10 1 0.5722 -2.5545 -0.8515
11 6 0.4803 -2.6881 1.3296
12 6 0.2972 -4.2153 1.4471
13 6 1.4102 -4.8579 0.6010
14 1 0.9739 -5.4599 -0.1961
15 7 2.2664 -5.6919 1.4480
16 6 1.9473 -6.9833 1.6646
17 8 0.9489 -7.4563 1.1566
18 7 2.7347 -7.7505 2.4443
19 6 2.3465 -9.0575 2.7600
20 6 3.3070 -10.0497 2.9149
21 6 2.9277 -11.3397 3.2328
22 6 1.5915 -11.6528 3.3860
23 6 0.6215 -10.6656 3.2269
24 6 -0.8155 -11.0006 3.3919
25 7 -1.8527 -10.1604 3.2692
26 7 -2.9255 -10.8417 3.4894
27 7 -2.6014 -12.0618 3.7415
28 1 -3.2243 -12.7782 3.9407
29 7 -1.3198 -12.1834 3.6817
30 6 1.0030 -9.3642 2.9128
31 6 2.2305 -3.6987 -0.0017
32 1 -0.4849 0.8400 -0.0004
33 1 1.0658 -2.3085 2.1670
34 1 -0.4883 -2.1901 1.2833
35 1 -0.6801 -4.5050 1.0607
36 1 0.3941 -4.5239 2.4880
37 1 3.0630 -5.3147 1.8530
38 1 3.5705 -7.3967 2.7866
39 1 4.3529 -9.8108 2.7909
40 1 3.6781 -12.1064 3.3569
41 1 1.2983 -12.6634 3.6297
42 1 0.2546 -8.5954 2.7889
43 1 2.5394 -3.9386 -1.0191
44 1 3.0999 -3.4811 0.6187
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001606351172.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:30
Heat of formation + Delta-G solvation = 91.887747 kcal
Electronic energy + Delta-G solvation = -28326.432370 eV
Core-core repulsion = 24280.371417 eV
Total energy + Delta-G solvation = -4046.060953 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.155 amu
Computer time = 2.66 seconds
Orbital eigenvalues (eV)
-45.48571 -41.72865 -40.01236 -38.71376 -36.06593 -35.35506 -35.31516 -34.37575
-33.74029 -31.62684 -30.57933 -29.89506 -28.47047 -25.90757 -25.73066 -25.57978
-23.86047 -22.70854 -21.90274 -21.24441 -20.90454 -20.32420 -19.32637 -18.69228
-18.30413 -18.16843 -17.14537 -16.88669 -16.58456 -16.36287 -16.09333 -15.60740
-15.56243 -15.21256 -14.96120 -14.50262 -14.38724 -14.05340 -13.99681 -13.62981
-13.38764 -13.00933 -12.80798 -12.76744 -12.66558 -12.50026 -12.41580 -12.34636
-12.17097 -12.11304 -12.06312 -11.65734 -11.40339 -11.31222 -11.10802 -11.02898
-10.79779 -10.44724 -10.04166 -9.70785 -9.05147 -8.08358 -6.18184 -0.29372
0.15610 0.39161 1.29347 1.40336 1.43465 1.45572 1.56285 1.61273
2.09810 2.46692 2.64802 2.89919 3.13260 3.23186 3.28560 3.93345
4.03172 4.06207 4.08284 4.21803 4.22515 4.36917 4.43104 4.54525
4.60577 4.71277 4.78380 4.92820 4.98286 5.05303 5.09585 5.19067
5.26221 5.31633 5.39324 5.42213 5.50383 5.52197 5.61653 5.67590
5.69655 5.93275 6.00470 6.01866 6.03486 6.39746 6.93514 7.04267
7.09876 7.49644 7.52770 9.01137
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.018175 B = 0.002116 C = 0.001927
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1540.223386 B =13228.129818 C =14529.817882
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C 0.008 3.992
3 Si 0.954 3.046
4 H -0.261 1.261
5 H -0.285 1.285
6 H -0.284 1.284
7 C -0.524 4.524
8 H 0.062 0.938
9 C 0.040 3.960
10 H 0.000 1.000
11 C -0.092 4.092
12 C -0.124 4.124
13 C 0.171 3.829
14 H 0.069 0.931
15 N -0.715 5.715
16 C 0.697 3.303
17 O -0.614 6.614
18 N -0.672 5.672
19 C 0.153 3.847
20 C -0.115 4.115
21 C -0.090 4.090
22 C -0.097 4.097
23 C -0.021 4.021
24 C 0.209 3.791
25 N -0.305 5.305
26 N -0.062 5.062
27 N -0.198 5.198
28 H 0.495 0.505
29 N -0.286 5.286
30 C -0.106 4.106
31 C -0.105 4.105
32 H 0.258 0.742
33 H 0.043 0.957
34 H 0.032 0.968
35 H 0.046 0.954
36 H 0.061 0.939
37 H 0.412 0.588
38 H 0.427 0.573
39 H 0.166 0.834
40 H 0.175 0.825
41 H 0.150 0.850
42 H 0.112 0.888
43 H 0.062 0.938
44 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.383 -28.284 11.026 31.243
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.191 4.191
3 Si 0.780 3.220
4 H -0.185 1.185
5 H -0.212 1.212
6 H -0.210 1.210
7 C -0.562 4.562
8 H 0.080 0.920
9 C 0.021 3.979
10 H 0.018 0.982
11 C -0.131 4.131
12 C -0.163 4.163
13 C 0.065 3.935
14 H 0.088 0.912
15 N -0.370 5.370
16 C 0.397 3.603
17 O -0.493 6.493
18 N -0.322 5.322
19 C 0.058 3.942
20 C -0.136 4.136
21 C -0.108 4.108
22 C -0.118 4.118
23 C -0.025 4.025
24 C -0.071 4.071
25 N -0.177 5.177
26 N -0.057 5.057
27 N -0.049 5.049
28 H 0.354 0.646
29 N -0.138 5.138
30 C -0.129 4.129
31 C -0.143 4.143
32 H 0.067 0.933
33 H 0.061 0.939
34 H 0.051 0.949
35 H 0.065 0.935
36 H 0.080 0.920
37 H 0.250 0.750
38 H 0.266 0.734
39 H 0.183 0.817
40 H 0.192 0.808
41 H 0.167 0.833
42 H 0.130 0.870
43 H 0.081 0.919
44 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 5.662 -28.357 10.554 30.783
hybrid contribution 0.120 1.309 0.199 1.330
sum 5.782 -27.048 10.753 29.676
Atomic orbital electron populations
1.70118 1.07458 1.27048 1.51661 1.25816 0.95585 1.02634 0.95039
0.85556 0.79384 0.79769 0.77241 1.18472 1.21159 1.21016 1.21521
0.93213 0.91471 1.49985 0.91962 1.19532 0.93001 0.92397 0.92955
0.98179 1.22123 0.99391 0.92454 0.99097 1.22524 0.97987 0.96364
0.99452 1.21346 0.90383 0.90397 0.91340 0.91245 1.45191 1.30053
1.08272 1.53493 1.16169 0.82933 0.81725 0.79450 1.90957 1.29284
1.73616 1.55481 1.42398 1.25511 1.12021 1.52242 1.17514 0.92702
0.84489 0.99503 1.21433 1.00076 0.91531 1.00585 1.21305 0.95541
0.96462 0.97506 1.21366 0.92477 0.98903 0.99029 1.17209 0.85401
0.94427 1.05504 1.23956 0.96683 0.85460 1.01020 1.76211 0.95392
1.27079 1.19017 1.78895 1.21352 0.91470 1.13972 1.47809 1.04808
1.10310 1.42021 0.64563 1.74829 0.93528 1.23541 1.21945 1.21052
0.96330 0.96252 0.99298 1.22556 0.98466 0.93301 1.00013 0.93270
0.93861 0.94910 0.93493 0.92015 0.75048 0.73365 0.81663 0.80771
0.83265 0.86961 0.91924 0.90290
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.31 12.42 21.45 0.27 -54.04 16
2 C 0.01 0.42 5.36 84.65 0.45 0.87 16
3 Si 0.95 43.12 29.54 68.60 2.03 45.15 16
4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16
5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16
6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
7 C -0.52 -27.94 8.49 25.60 0.22 -27.72 16
8 H 0.06 3.17 7.77 -2.91 -0.02 3.15 16
9 C 0.04 1.97 2.73 -10.26 -0.03 1.94 16
10 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16
11 C -0.09 -4.34 5.76 31.67 0.18 -4.16 16
12 C -0.12 -4.97 6.59 31.32 0.21 -4.76 16
13 C 0.17 6.10 3.25 45.72 0.15 6.24 16
14 H 0.07 2.71 7.56 -2.38 -0.02 2.69 16
15 N -0.72 -19.80 4.99 -454.35 -2.27 -22.07 16
16 C 0.70 20.71 8.30 179.05 1.49 22.19 16
17 O -0.61 -24.27 13.68 -4.01 -0.05 -24.32 16
18 N -0.67 -13.76 5.35 -317.26 -1.70 -15.46 16
19 C 0.15 3.29 6.28 38.11 0.24 3.53 16
20 C -0.11 -1.49 9.95 22.43 0.22 -1.27 16
21 C -0.09 -0.98 10.03 22.22 0.22 -0.75 16
22 C -0.10 -1.53 9.69 22.49 0.22 -1.31 16
23 C -0.02 -0.51 5.87 -20.06 -0.12 -0.63 16
24 C 0.21 5.39 7.94 137.38 1.09 6.48 16
25 N -0.31 -9.29 12.23 -52.17 -0.64 -9.93 16
26 N -0.06 -1.49 13.47 37.02 0.50 -0.99 16
27 N -0.20 -3.04 7.90 37.02 0.29 -2.75 16
28 H 0.50 2.02 8.96 -347.53 -3.12 -1.09 16
29 N -0.29 -5.57 12.08 -52.12 -0.63 -6.20 16
30 C -0.11 -2.96 8.31 22.60 0.19 -2.77 16
31 C -0.11 -3.98 5.94 31.66 0.19 -3.79 16
32 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16
33 H 0.04 2.03 8.04 -2.39 -0.02 2.01 16
34 H 0.03 1.73 7.64 -2.39 -0.02 1.71 16
35 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16
36 H 0.06 2.31 7.92 -2.39 -0.02 2.29 16
37 H 0.41 8.53 8.38 -92.71 -0.78 7.75 16
38 H 0.43 5.03 8.83 -92.71 -0.82 4.21 16
39 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16
40 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16
41 H 0.15 1.78 7.88 -2.91 -0.02 1.75 16
42 H 0.11 4.04 6.24 -2.91 -0.02 4.02 16
43 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16
44 H 0.08 2.70 7.63 -2.39 -0.02 2.68 16
Total: -1.00 -79.63 373.15 -0.91 -80.53
By element:
Atomic # 1 Polarization: 19.60 SS G_CDS: -3.62 Total: 15.97 kcal
Atomic # 6 Polarization: -10.82 SS G_CDS: 4.92 Total: -5.90 kcal
Atomic # 7 Polarization: -107.26 SS G_CDS: -4.17 Total: -111.43 kcal
Atomic # 8 Polarization: -24.27 SS G_CDS: -0.05 Total: -24.32 kcal
Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal
Total: -79.63 -0.91 -80.53 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001606351172.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 172.421 kcal
(2) G-P(sol) polarization free energy of solvation -79.626 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.794 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.907 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) 91.888 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.66 seconds