Wall clock time and date at job start Sat Apr 11 2020 06:36:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86796 * 120.00414 * 2 1
4 4 H 1.48501 * 109.46721 * 90.00232 * 3 2 1
5 5 H 1.48499 * 109.47520 * 210.00224 * 3 2 1
6 6 H 1.48500 * 109.46964 * 330.00525 * 3 2 1
7 7 C 1.38815 * 119.99688 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00179 * 23.64953 * 7 2 1
9 9 N 1.36939 * 119.99679 * 203.65649 * 7 2 1
10 10 C 1.47416 * 125.64950 * 14.56490 * 9 7 2
11 11 C 1.55135 * 104.72564 * 155.81761 * 10 9 7
12 12 C 1.55160 * 101.48110 * 37.29431 * 11 10 9
13 13 H 1.08999 * 110.87479 * 82.76936 * 12 11 10
14 14 N 1.46509 * 110.71923 * 205.97270 * 12 11 10
15 15 C 1.35308 * 125.86964 * 79.97059 * 14 12 11
16 16 C 1.35344 * 106.17843 * 180.02562 * 15 14 12
17 17 C 1.50698 * 126.75640 * 179.97438 * 16 15 14
18 18 N 1.46497 * 109.47399 * 94.99848 * 17 16 15
19 19 C 1.34773 * 120.00503 * 180.02562 * 18 17 16
20 20 O 1.21517 * 119.99568 * 0.02562 * 19 18 17
21 21 C 1.48148 * 120.00293 * 180.02562 * 19 18 17
22 22 C 1.39816 * 120.92440 * 359.71446 * 21 19 18
23 23 C 1.38145 * 119.00268 * 179.75686 * 22 21 19
24 24 N 1.31814 * 120.89744 * 0.53665 * 23 22 21
25 25 C 1.31818 * 122.04859 * 359.73867 * 24 23 22
26 26 C 1.38149 * 120.89337 * 359.97438 * 25 24 23
27 27 N 1.33776 * 106.49557 * 0.02562 * 16 15 14
28 28 N 1.28633 * 108.88206 * 359.73670 * 27 16 15
29 29 C 1.47021 * 125.64344 * 194.86790 * 9 7 2
30 30 H 0.96998 * 120.00089 * 174.68800 * 1 2 3
31 31 H 1.09003 * 110.36554 * 274.74278 * 10 9 7
32 32 H 1.08998 * 110.37084 * 37.06936 * 10 9 7
33 33 H 1.08998 * 111.18992 * 279.19469 * 11 10 9
34 34 H 1.08995 * 110.93995 * 155.28620 * 11 10 9
35 35 H 1.08009 * 126.91241 * 359.97438 * 15 14 12
36 36 H 1.08996 * 109.47488 * 215.00038 * 17 16 15
37 37 H 1.09004 * 109.47055 * 334.99839 * 17 16 15
38 38 H 0.97009 * 119.99776 * 0.02562 * 18 17 16
39 39 H 1.07997 * 120.49488 * 0.02562 * 22 21 19
40 40 H 1.07999 * 119.55174 * 180.27665 * 23 22 21
41 41 H 1.07997 * 119.55255 * 180.02562 * 25 24 23
42 42 H 1.08001 * 120.49588 * 180.02562 * 26 25 24
43 43 H 1.08991 * 109.88882 * 300.43929 * 29 9 7
44 44 H 1.08999 * 109.88521 * 61.61213 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 2.4978 2.0462 1.4001
5 1 3.5478 1.4401 -0.7001
6 1 1.4477 2.6526 -0.6999
7 6 2.0102 -1.2022 -0.0005
8 1 1.5382 -2.0980 -0.3761
9 7 3.2933 -1.2522 0.4753
10 6 3.9514 -0.2092 1.2829
11 6 5.0663 -0.9572 2.0602
12 6 5.5477 -1.9824 0.9996
13 1 6.2633 -1.5265 0.3155
14 7 6.1297 -3.1617 1.6454
15 6 5.4387 -4.1944 2.1810
16 6 6.3633 -5.0557 2.6658
17 6 6.0981 -6.3660 3.3615
18 7 6.1609 -7.4579 2.3868
19 6 5.9537 -8.7289 2.7844
20 8 5.7143 -8.9690 3.9513
21 6 6.0177 -9.8331 1.7988
22 6 6.2858 -9.5781 0.4505
23 6 6.3414 -10.6383 -0.4335
24 7 6.1355 -11.8737 -0.0226
25 6 5.8744 -12.1572 1.2380
26 6 5.8059 -11.1586 2.1902
27 7 7.5591 -4.5147 2.4070
28 7 7.3863 -3.3953 1.7971
29 6 4.2446 -2.3523 0.2601
30 1 -0.4850 -0.8364 -0.0778
31 1 4.3836 0.5547 0.6365
32 1 3.2403 0.2381 1.9772
33 1 4.6635 -1.4629 2.9377
34 1 5.8707 -0.2766 2.3389
35 1 4.3652 -4.3081 2.2156
36 1 6.8496 -6.5255 4.1347
37 1 5.1080 -6.3417 3.8167
38 1 6.3516 -7.2661 1.4552
39 1 6.4513 -8.5680 0.1061
40 1 6.5523 -10.4519 -1.4761
41 1 5.7127 -13.1842 1.5305
42 1 5.5920 -11.3983 3.2213
43 1 3.8382 -3.2787 0.6659
44 1 4.4432 -2.4676 -0.8055
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000999961938.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:31
Heat of formation + Delta-G solvation = 138.291861 kcal
Electronic energy + Delta-G solvation = -28270.803194 eV
Core-core repulsion = 24226.754475 eV
Total energy + Delta-G solvation = -4044.048719 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.155 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-43.44121 -40.94785 -39.37093 -38.34692 -35.64704 -34.19987 -33.23521 -32.32585
-31.80636 -31.33247 -29.87832 -28.50135 -27.38733 -24.84270 -24.54159 -23.80256
-22.85714 -21.72517 -21.18734 -21.12293 -20.21505 -18.88008 -17.84077 -17.33861
-17.02113 -16.30065 -16.14952 -15.80712 -15.71247 -15.61536 -15.52051 -14.98239
-14.39186 -14.27777 -14.21898 -13.89406 -13.86024 -13.68276 -13.42832 -12.96687
-12.92914 -12.23701 -12.15949 -11.97265 -11.72852 -11.56710 -11.36545 -11.12495
-10.99695 -10.73750 -10.41185 -10.35559 -10.01004 -9.93847 -9.81539 -9.66476
-9.48944 -9.44521 -9.41836 -8.76043 -7.38549 -6.54036 -3.48725 0.27276
0.63300 1.45742 2.08304 2.22763 2.50679 2.94962 3.24484 3.35096
3.43132 3.50067 3.96538 4.01282 4.12981 4.32299 4.38378 4.39513
4.49040 4.53027 4.61648 4.63075 4.70563 4.88926 4.89501 5.03748
5.20055 5.23654 5.29312 5.31653 5.39444 5.40969 5.49449 5.59219
5.74340 5.81468 5.89420 5.91631 5.95064 6.05729 6.13517 6.24589
6.36029 6.57759 7.02817 7.39118 7.45022 7.72278 8.10231 8.38924
8.77902 9.29901 9.94364 10.93176
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.015121 B = 0.002206 C = 0.002058
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1851.319349 B =12688.599190 C =13601.816280
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C -0.013 4.013
3 Si 1.062 2.938
4 H -0.291 1.291
5 H -0.285 1.285
6 H -0.295 1.295
7 C -0.337 4.337
8 H 0.078 0.922
9 N -0.602 5.602
10 C 0.105 3.895
11 C -0.135 4.135
12 C 0.122 3.878
13 H 0.124 0.876
14 N -0.270 5.270
15 C -0.012 4.012
16 C -0.061 4.061
17 C 0.214 3.786
18 N -0.715 5.715
19 C 0.560 3.440
20 O -0.528 6.528
21 C -0.085 4.085
22 C -0.141 4.141
23 C 0.098 3.902
24 N -0.470 5.470
25 C 0.096 3.904
26 C -0.115 4.115
27 N -0.260 5.260
28 N -0.082 5.082
29 C 0.130 3.870
30 H 0.265 0.735
31 H 0.042 0.958
32 H 0.072 0.928
33 H 0.080 0.920
34 H 0.083 0.917
35 H 0.193 0.807
36 H 0.090 0.910
37 H 0.091 0.909
38 H 0.403 0.597
39 H 0.139 0.861
40 H 0.163 0.837
41 H 0.164 0.836
42 H 0.149 0.851
43 H 0.041 0.959
44 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.397 -16.275 2.781 21.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.215 4.215
3 Si 0.894 3.106
4 H -0.219 1.219
5 H -0.212 1.212
6 H -0.222 1.222
7 C -0.463 4.463
8 H 0.095 0.905
9 N -0.330 5.330
10 C -0.020 4.020
11 C -0.175 4.175
12 C 0.020 3.980
13 H 0.142 0.858
14 N -0.062 5.062
15 C -0.165 4.165
16 C -0.199 4.199
17 C 0.090 3.910
18 N -0.367 5.367
19 C 0.346 3.654
20 O -0.404 6.404
21 C -0.097 4.097
22 C -0.161 4.161
23 C -0.059 4.059
24 N -0.180 5.180
25 C -0.061 4.061
26 C -0.136 4.136
27 N -0.127 5.127
28 N -0.061 5.061
29 C 0.003 3.997
30 H 0.076 0.924
31 H 0.059 0.941
32 H 0.090 0.910
33 H 0.099 0.901
34 H 0.101 0.899
35 H 0.210 0.790
36 H 0.108 0.892
37 H 0.109 0.891
38 H 0.239 0.761
39 H 0.157 0.843
40 H 0.180 0.820
41 H 0.181 0.819
42 H 0.167 0.833
43 H 0.059 0.941
44 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 14.396 -14.898 2.794 20.905
hybrid contribution -0.880 -0.980 0.048 1.318
sum 13.516 -15.879 2.842 21.045
Atomic orbital electron populations
1.70909 1.05766 1.30252 1.48228 1.25956 0.96402 1.00974 0.98211
0.83871 0.74355 0.75937 0.76477 1.21858 1.21208 1.22244 1.20011
0.86017 0.96733 1.43575 0.90465 1.44742 1.10741 1.17538 1.59976
1.22166 0.93421 0.92647 0.93794 1.23250 0.99500 0.97340 0.97414
1.23050 0.96976 0.82077 0.95861 0.85795 1.47583 1.05259 1.16514
1.36799 1.23491 1.01369 0.89662 1.01999 1.21692 0.89885 0.99917
1.08412 1.19351 1.03316 0.78781 0.89585 1.45928 1.71955 1.05855
1.12967 1.18134 0.77147 0.82383 0.87758 1.90802 1.47921 1.83772
1.17950 1.20366 1.00921 0.94545 0.93835 1.22392 0.99238 1.01487
0.93027 1.22801 0.95360 0.87334 1.00422 1.67586 1.09588 1.22681
1.18123 1.22858 0.95285 1.00014 0.87937 1.22349 0.97126 0.91794
1.02308 1.75060 1.23078 1.02245 1.12289 1.78322 0.98225 1.12492
1.17102 1.21623 0.86664 0.93940 0.97497 0.92409 0.94094 0.90965
0.90147 0.89885 0.78973 0.89220 0.89121 0.76106 0.84301 0.81956
0.81871 0.83282 0.94089 0.93747
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -26.77 13.70 55.49 0.76 -26.01 16
2 C -0.01 -0.37 5.42 -17.43 -0.09 -0.46 16
3 Si 1.06 24.31 24.69 -169.99 -4.20 20.11 16
4 H -0.29 -6.23 6.66 56.52 0.38 -5.86 16
5 H -0.29 -6.08 6.22 56.52 0.35 -5.73 16
6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
7 C -0.34 -8.73 10.44 -15.06 -0.16 -8.89 16
8 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16
9 N -0.60 -12.85 3.25 -169.94 -0.55 -13.40 16
10 C 0.11 1.95 4.71 -2.41 -0.01 1.94 16
11 C -0.14 -1.94 6.78 -24.46 -0.17 -2.10 16
12 C 0.12 1.70 3.98 -66.09 -0.26 1.43 16
13 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16
14 N -0.27 -3.64 3.36 -52.97 -0.18 -3.82 16
15 C -0.01 -0.15 10.44 -17.05 -0.18 -0.32 16
16 C -0.06 -0.72 6.61 -82.78 -0.55 -1.26 16
17 C 0.21 2.16 6.23 -5.20 -0.03 2.13 16
18 N -0.71 -6.65 5.51 -62.34 -0.34 -7.00 16
19 C 0.56 5.97 7.80 -12.19 -0.10 5.88 16
20 O -0.53 -7.24 16.45 5.35 0.09 -7.15 16
21 C -0.09 -0.77 5.91 -104.65 -0.62 -1.39 16
22 C -0.14 -1.03 9.62 -39.03 -0.38 -1.40 16
23 C 0.10 0.73 11.17 -17.59 -0.20 0.53 16
24 N -0.47 -4.21 10.34 -13.31 -0.14 -4.34 16
25 C 0.10 0.73 11.17 -17.59 -0.20 0.53 16
26 C -0.12 -0.95 9.68 -39.02 -0.38 -1.33 16
27 N -0.26 -3.70 12.41 33.29 0.41 -3.29 16
28 N -0.08 -1.22 13.16 60.35 0.79 -0.42 16
29 C 0.13 2.18 6.86 -3.06 -0.02 2.16 16
30 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16
31 H 0.04 0.76 5.50 -51.93 -0.29 0.48 16
32 H 0.07 1.44 6.38 -51.93 -0.33 1.11 16
33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
35 H 0.19 2.06 7.06 -52.48 -0.37 1.69 16
36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16
37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
38 H 0.40 3.15 6.61 -40.82 -0.27 2.88 16
39 H 0.14 0.71 6.54 -52.49 -0.34 0.37 16
40 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16
41 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16
42 H 0.15 1.13 7.74 -52.49 -0.41 0.72 16
43 H 0.04 0.66 6.01 -51.93 -0.31 0.35 16
44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
LS Contribution 367.27 15.07 5.53 5.53
Total: -1.00 -32.86 367.27 -6.50 -39.36
By element:
Atomic # 1 Polarization: 8.35 SS G_CDS: -5.35 Total: 2.99 kcal
Atomic # 6 Polarization: 0.77 SS G_CDS: -3.33 Total: -2.56 kcal
Atomic # 7 Polarization: -59.05 SS G_CDS: 0.76 Total: -58.29 kcal
Atomic # 8 Polarization: -7.24 SS G_CDS: 0.09 Total: -7.15 kcal
Atomic # 14 Polarization: 24.31 SS G_CDS: -4.20 Total: 20.11 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -32.86 -6.50 -39.36 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999961938.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 177.651 kcal
(2) G-P(sol) polarization free energy of solvation -32.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.791 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal
(6) G-S(sol) free energy of system = (1) + (5) 138.292 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds