Wall clock time and date at job start Sat Apr 11 2020 06:36:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86796 * 120.00414 * 2 1
4 4 H 1.48501 * 109.46721 * 90.00232 * 3 2 1
5 5 H 1.48499 * 109.47520 * 210.00224 * 3 2 1
6 6 H 1.48500 * 109.46964 * 330.00525 * 3 2 1
7 7 C 1.38815 * 119.99688 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00179 * 23.64953 * 7 2 1
9 9 N 1.36939 * 119.99679 * 203.65649 * 7 2 1
10 10 C 1.47416 * 125.64950 * 14.56490 * 9 7 2
11 11 C 1.55135 * 104.72564 * 155.81761 * 10 9 7
12 12 C 1.55160 * 101.48110 * 37.29431 * 11 10 9
13 13 H 1.08999 * 110.87479 * 82.76936 * 12 11 10
14 14 N 1.46509 * 110.71923 * 205.97270 * 12 11 10
15 15 C 1.35308 * 125.86964 * 79.97059 * 14 12 11
16 16 C 1.35344 * 106.17843 * 180.02562 * 15 14 12
17 17 C 1.50698 * 126.75640 * 179.97438 * 16 15 14
18 18 N 1.46497 * 109.47399 * 94.99848 * 17 16 15
19 19 C 1.34773 * 120.00503 * 180.02562 * 18 17 16
20 20 O 1.21517 * 119.99568 * 0.02562 * 19 18 17
21 21 C 1.48148 * 120.00293 * 180.02562 * 19 18 17
22 22 C 1.39816 * 120.92440 * 359.71446 * 21 19 18
23 23 C 1.38145 * 119.00268 * 179.75686 * 22 21 19
24 24 N 1.31814 * 120.89744 * 0.53665 * 23 22 21
25 25 C 1.31818 * 122.04859 * 359.73867 * 24 23 22
26 26 C 1.38149 * 120.89337 * 359.97438 * 25 24 23
27 27 N 1.33776 * 106.49557 * 0.02562 * 16 15 14
28 28 N 1.28633 * 108.88206 * 359.73670 * 27 16 15
29 29 C 1.47021 * 125.64344 * 194.86790 * 9 7 2
30 30 H 0.96998 * 120.00089 * 174.68800 * 1 2 3
31 31 H 1.09003 * 110.36554 * 274.74278 * 10 9 7
32 32 H 1.08998 * 110.37084 * 37.06936 * 10 9 7
33 33 H 1.08998 * 111.18992 * 279.19469 * 11 10 9
34 34 H 1.08995 * 110.93995 * 155.28620 * 11 10 9
35 35 H 1.08009 * 126.91241 * 359.97438 * 15 14 12
36 36 H 1.08996 * 109.47488 * 215.00038 * 17 16 15
37 37 H 1.09004 * 109.47055 * 334.99839 * 17 16 15
38 38 H 0.97009 * 119.99776 * 0.02562 * 18 17 16
39 39 H 1.07997 * 120.49488 * 0.02562 * 22 21 19
40 40 H 1.07999 * 119.55174 * 180.27665 * 23 22 21
41 41 H 1.07997 * 119.55255 * 180.02562 * 25 24 23
42 42 H 1.08001 * 120.49588 * 180.02562 * 26 25 24
43 43 H 1.08991 * 109.88882 * 300.43929 * 29 9 7
44 44 H 1.08999 * 109.88521 * 61.61213 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 2.4978 2.0462 1.4001
5 1 3.5478 1.4401 -0.7001
6 1 1.4477 2.6526 -0.6999
7 6 2.0102 -1.2022 -0.0005
8 1 1.5382 -2.0980 -0.3761
9 7 3.2933 -1.2522 0.4753
10 6 3.9514 -0.2092 1.2829
11 6 5.0663 -0.9572 2.0602
12 6 5.5477 -1.9824 0.9996
13 1 6.2633 -1.5265 0.3155
14 7 6.1297 -3.1617 1.6454
15 6 5.4387 -4.1944 2.1810
16 6 6.3633 -5.0557 2.6658
17 6 6.0981 -6.3660 3.3615
18 7 6.1609 -7.4579 2.3868
19 6 5.9537 -8.7289 2.7844
20 8 5.7143 -8.9690 3.9513
21 6 6.0177 -9.8331 1.7988
22 6 6.2858 -9.5781 0.4505
23 6 6.3414 -10.6383 -0.4335
24 7 6.1355 -11.8737 -0.0226
25 6 5.8744 -12.1572 1.2380
26 6 5.8059 -11.1586 2.1902
27 7 7.5591 -4.5147 2.4070
28 7 7.3863 -3.3953 1.7971
29 6 4.2446 -2.3523 0.2601
30 1 -0.4850 -0.8364 -0.0778
31 1 4.3836 0.5547 0.6365
32 1 3.2403 0.2381 1.9772
33 1 4.6635 -1.4629 2.9377
34 1 5.8707 -0.2766 2.3389
35 1 4.3652 -4.3081 2.2156
36 1 6.8496 -6.5255 4.1347
37 1 5.1080 -6.3417 3.8167
38 1 6.3516 -7.2661 1.4552
39 1 6.4513 -8.5680 0.1061
40 1 6.5523 -10.4519 -1.4761
41 1 5.7127 -13.1842 1.5305
42 1 5.5920 -11.3983 3.2213
43 1 3.8382 -3.2787 0.6659
44 1 4.4432 -2.4676 -0.8055
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000999961938.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:30
Heat of formation + Delta-G solvation = 114.010760 kcal
Electronic energy + Delta-G solvation = -28271.856101 eV
Core-core repulsion = 24226.754475 eV
Total energy + Delta-G solvation = -4045.101627 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.155 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-44.47923 -41.63332 -40.13392 -39.70454 -36.58973 -35.56489 -34.15146 -33.80612
-32.55330 -32.10100 -31.39329 -29.82488 -28.27235 -26.26762 -25.43984 -24.40024
-24.09409 -22.93698 -22.45081 -21.90537 -21.47585 -19.73558 -19.55199 -18.40446
-17.85609 -17.27281 -17.09033 -16.74231 -16.55695 -16.49186 -16.33757 -16.17935
-15.70637 -15.49992 -15.32266 -14.94645 -14.85524 -14.57805 -14.41659 -14.27735
-13.89446 -13.68134 -13.30467 -13.14233 -12.91662 -12.76974 -12.68369 -12.49367
-12.09562 -11.88093 -11.62011 -11.53997 -11.35622 -11.08367 -11.03830 -10.68773
-10.61255 -10.39495 -10.30046 -10.22542 -9.22846 -8.64197 -5.51629 -0.38948
0.07000 0.44626 1.10131 1.15850 1.42609 1.55485 1.70469 1.73818
2.12535 2.52713 2.81649 2.99431 3.03851 3.24464 3.33035 3.40046
3.43631 3.48674 3.65354 3.77809 3.81433 3.91297 3.91732 4.04390
4.14303 4.20675 4.37533 4.47860 4.51876 4.61827 4.67931 4.75824
4.77198 4.78038 4.78856 4.84160 4.93761 4.99595 5.02782 5.12463
5.49044 5.55949 5.58128 6.06806 6.26796 6.76436 6.87637 6.92931
7.34482 7.39112 8.02198 8.83343
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.015121 B = 0.002206 C = 0.002058
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1851.319349 B =12688.599190 C =13601.816280
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.955 5.955
2 C -0.072 4.072
3 Si 1.100 2.900
4 H -0.268 1.268
5 H -0.258 1.258
6 H -0.310 1.310
7 C -0.318 4.318
8 H 0.046 0.954
9 N -0.623 5.623
10 C 0.096 3.904
11 C -0.122 4.122
12 C 0.137 3.863
13 H 0.143 0.857
14 N -0.270 5.270
15 C -0.012 4.012
16 C -0.048 4.048
17 C 0.217 3.783
18 N -0.705 5.705
19 C 0.561 3.439
20 O -0.564 6.564
21 C -0.102 4.102
22 C -0.136 4.136
23 C 0.092 3.908
24 N -0.492 5.492
25 C 0.094 3.906
26 C -0.123 4.123
27 N -0.276 5.276
28 N -0.097 5.097
29 C 0.128 3.872
30 H 0.250 0.750
31 H 0.051 0.949
32 H 0.055 0.945
33 H 0.080 0.920
34 H 0.114 0.886
35 H 0.206 0.794
36 H 0.086 0.914
37 H 0.100 0.900
38 H 0.412 0.588
39 H 0.160 0.840
40 H 0.188 0.812
41 H 0.188 0.812
42 H 0.151 0.849
43 H 0.048 0.952
44 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.827 -16.290 2.759 22.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.598 5.598
2 C -0.267 4.267
3 Si 0.925 3.075
4 H -0.194 1.194
5 H -0.183 1.183
6 H -0.239 1.239
7 C -0.446 4.446
8 H 0.064 0.936
9 N -0.351 5.351
10 C -0.028 4.028
11 C -0.161 4.161
12 C 0.035 3.965
13 H 0.161 0.839
14 N -0.062 5.062
15 C -0.165 4.165
16 C -0.187 4.187
17 C 0.092 3.908
18 N -0.358 5.358
19 C 0.349 3.651
20 O -0.443 6.443
21 C -0.113 4.113
22 C -0.156 4.156
23 C -0.064 4.064
24 N -0.201 5.201
25 C -0.062 4.062
26 C -0.143 4.143
27 N -0.143 5.143
28 N -0.076 5.076
29 C 0.002 3.998
30 H 0.059 0.941
31 H 0.069 0.931
32 H 0.074 0.926
33 H 0.099 0.901
34 H 0.132 0.868
35 H 0.223 0.777
36 H 0.104 0.896
37 H 0.118 0.882
38 H 0.249 0.751
39 H 0.178 0.822
40 H 0.204 0.796
41 H 0.205 0.795
42 H 0.168 0.832
43 H 0.065 0.935
44 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 16.894 -14.938 2.768 22.721
hybrid contribution -1.610 -1.150 0.046 1.979
sum 15.285 -16.089 2.814 22.369
Atomic orbital electron populations
1.71029 1.07197 1.29363 1.52168 1.27158 0.96324 1.04529 0.98685
0.83425 0.74165 0.72009 0.77857 1.19408 1.18276 1.23855 1.19853
0.88156 0.95326 1.41314 0.93575 1.44715 1.10337 1.19484 1.60577
1.22287 0.94165 0.92678 0.93701 1.23163 0.98758 0.97410 0.96750
1.22835 0.95903 0.81994 0.95728 0.83884 1.47473 1.05179 1.16589
1.36952 1.23748 1.01960 0.89286 1.01481 1.21814 0.89111 1.00127
1.07642 1.19346 1.03715 0.78256 0.89477 1.45826 1.71293 1.05363
1.13292 1.18370 0.76340 0.82887 0.87537 1.90781 1.49787 1.84295
1.19469 1.20373 1.02353 0.94276 0.94314 1.22590 0.98279 1.02588
0.92145 1.23254 0.94637 0.86911 1.01621 1.67638 1.10222 1.23570
1.18708 1.23234 0.94540 1.01014 0.87435 1.22469 0.97304 0.91888
1.02671 1.75051 1.24088 1.02442 1.12715 1.78319 0.98528 1.12893
1.17848 1.21681 0.87358 0.92608 0.98184 0.94087 0.93137 0.92636
0.90090 0.86762 0.77736 0.89608 0.88225 0.75098 0.82240 0.79553
0.79497 0.83163 0.93457 0.93523
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -57.92 13.70 21.65 0.30 -57.63 16
2 C -0.07 -3.98 5.42 84.86 0.46 -3.52 16
3 Si 1.10 48.34 24.69 68.60 1.69 50.03 16
4 H -0.27 -10.69 6.66 99.48 0.66 -10.02 16
5 H -0.26 -10.02 6.22 99.48 0.62 -9.40 16
6 H -0.31 -14.29 7.11 99.48 0.71 -13.59 16
7 C -0.32 -16.64 10.44 84.03 0.88 -15.76 16
8 H 0.05 2.64 8.06 -2.91 -0.02 2.61 16
9 N -0.62 -25.65 3.25 -691.56 -2.25 -27.90 16
10 C 0.10 3.31 4.71 86.94 0.41 3.72 16
11 C -0.12 -3.01 6.78 32.07 0.22 -2.79 16
12 C 0.14 3.32 3.98 46.18 0.18 3.51 16
13 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16
14 N -0.27 -6.44 3.36 -321.51 -1.08 -7.52 16
15 C -0.01 -0.25 10.44 83.49 0.87 0.62 16
16 C -0.05 -1.03 6.61 41.59 0.28 -0.76 16
17 C 0.22 4.02 6.23 85.63 0.53 4.55 16
18 N -0.71 -12.04 5.51 -469.43 -2.58 -14.63 16
19 C 0.56 11.52 7.80 86.88 0.68 12.20 16
20 O -0.56 -15.35 16.45 -3.77 -0.06 -15.42 16
21 C -0.10 -1.74 5.91 -19.88 -0.12 -1.86 16
22 C -0.14 -1.73 9.62 22.63 0.22 -1.52 16
23 C 0.09 1.20 11.17 84.67 0.95 2.15 16
24 N -0.49 -8.08 10.34 -196.01 -2.03 -10.10 16
25 C 0.09 1.32 11.17 84.67 0.95 2.26 16
26 C -0.12 -1.95 9.68 22.63 0.22 -1.73 16
27 N -0.28 -7.24 12.41 -48.60 -0.60 -7.84 16
28 N -0.10 -2.59 13.16 37.02 0.49 -2.11 16
29 C 0.13 3.99 6.86 86.73 0.59 4.59 16
30 H 0.25 15.26 8.73 -92.71 -0.81 14.45 16
31 H 0.05 1.68 5.50 -2.39 -0.01 1.66 16
32 H 0.06 2.10 6.38 -2.39 -0.02 2.08 16
33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
34 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16
35 H 0.21 3.85 7.06 -2.91 -0.02 3.83 16
36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
37 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16
38 H 0.41 5.57 6.61 -92.70 -0.61 4.96 16
39 H 0.16 1.24 6.54 -2.91 -0.02 1.22 16
40 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16
41 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16
42 H 0.15 2.26 7.74 -2.91 -0.02 2.24 16
43 H 0.05 1.43 6.01 -2.39 -0.01 1.42 16
44 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
Total: -1.00 -72.66 367.27 1.46 -71.19
By element:
Atomic # 1 Polarization: 15.99 SS G_CDS: 0.27 Total: 16.27 kcal
Atomic # 6 Polarization: -1.67 SS G_CDS: 7.31 Total: 5.65 kcal
Atomic # 7 Polarization: -119.97 SS G_CDS: -7.75 Total: -127.72 kcal
Atomic # 8 Polarization: -15.35 SS G_CDS: -0.06 Total: -15.42 kcal
Atomic # 14 Polarization: 48.34 SS G_CDS: 1.69 Total: 50.03 kcal
Total: -72.66 1.46 -71.19 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999961938.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 185.205 kcal
(2) G-P(sol) polarization free energy of solvation -72.658 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.547 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) 114.011 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds