Wall clock time and date at job start Sat Apr 11 2020 06:36:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30833 * 125.88540 * 2 1
4 4 N 1.40086 * 108.23335 * 179.97438 * 3 2 1
5 5 C 1.46497 * 126.03489 * 180.02562 * 4 3 2
6 6 C 1.34982 * 107.92829 * 0.02562 * 4 3 2
7 7 Cl 1.73602 * 126.14430 * 179.97438 * 6 4 3
8 8 C 1.35465 * 107.71720 * 359.97438 * 6 4 3
9 9 C 1.50699 * 126.05142 * 179.73663 * 8 6 4
10 10 C 1.50702 * 109.47083 * 90.02984 * 9 8 6
11 11 O 1.21277 * 119.99810 * 359.97438 * 10 9 8
12 12 N 1.34776 * 120.00111 * 180.02562 * 10 9 8
13 13 C 1.46500 * 119.99937 * 179.97438 * 12 10 9
14 14 H 1.08994 * 109.47236 * 325.00603 * 13 12 10
15 15 C 1.53001 * 109.46793 * 85.00412 * 13 12 10
16 16 C 1.53004 * 109.47021 * 204.99958 * 13 12 10
17 17 C 1.53000 * 109.46998 * 65.00294 * 16 13 12
18 18 H 1.08994 * 109.47286 * 304.99871 * 17 16 13
19 19 C 1.52998 * 109.47027 * 184.99590 * 17 16 13
20 20 N 1.46503 * 109.47077 * 65.00011 * 17 16 13
21 21 C 1.36932 * 119.99925 * 205.00187 * 20 17 16
22 22 H 1.07997 * 120.00222 * 359.97438 * 21 20 17
23 23 C 1.38817 * 119.99983 * 180.02562 * 21 20 17
24 24 N 1.31616 * 119.99732 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 119.99889 * 179.97438 * 23 21 20
26 26 H 1.48497 * 109.47088 * 359.97438 * 25 23 21
27 27 H 1.48494 * 109.47260 * 119.99776 * 25 23 21
28 28 H 1.48506 * 109.46885 * 239.99953 * 25 23 21
29 29 H 1.09007 * 109.47096 * 270.02682 * 1 2 3
30 30 H 1.08994 * 109.47522 * 30.02257 * 1 2 3
31 31 H 1.09001 * 109.47447 * 150.02708 * 1 2 3
32 32 H 1.09000 * 109.47174 * 269.96180 * 5 4 3
33 33 H 1.08997 * 109.47330 * 29.96100 * 5 4 3
34 34 H 1.09001 * 109.46988 * 149.96002 * 5 4 3
35 35 H 1.08999 * 109.47316 * 210.02893 * 9 8 6
36 36 H 1.08997 * 109.46997 * 330.02946 * 9 8 6
37 37 H 0.97000 * 120.00196 * 0.02562 * 12 10 9
38 38 H 1.09001 * 109.46737 * 299.99751 * 15 13 12
39 39 H 1.09000 * 109.47687 * 59.99800 * 15 13 12
40 40 H 1.09004 * 109.47362 * 180.02562 * 15 13 12
41 41 H 1.08997 * 109.46792 * 185.00179 * 16 13 12
42 42 H 1.09000 * 109.46911 * 305.00287 * 16 13 12
43 43 H 1.09001 * 109.46666 * 60.00163 * 19 17 16
44 44 H 1.08996 * 109.47359 * 179.97438 * 19 17 16
45 45 H 1.08994 * 109.47317 * 300.00262 * 19 17 16
46 46 H 0.96999 * 119.99632 * 24.99388 * 20 17 16
47 47 H 0.97005 * 119.99778 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2739 1.0600 0.0000
4 7 3.6088 0.6352 0.0006
5 6 4.7893 1.5028 0.0013
6 6 3.6153 -0.7146 0.0004
7 17 5.0221 -1.7318 0.0003
8 6 2.3269 -1.1331 0.0002
9 6 1.8598 -2.5658 -0.0056
10 6 1.7053 -3.0496 1.4133
11 8 1.9509 -2.3045 2.3381
12 7 1.2953 -4.3106 1.6544
13 6 1.1457 -4.7811 3.0337
14 1 1.9150 -4.3268 3.6580
15 6 -0.2361 -4.3874 3.5597
16 6 1.2911 -6.3037 3.0719
17 6 2.7142 -6.6905 2.6644
18 1 2.9444 -6.2561 1.6916
19 6 2.8247 -8.2142 2.5818
20 7 3.6618 -6.1856 3.6612
21 6 4.9618 -5.9407 3.3076
22 1 5.2887 -6.1202 2.2941
23 6 5.8598 -5.4628 4.2522
24 7 5.4614 -5.2446 5.4875
25 14 7.6334 -5.1295 3.7700
26 1 7.8252 -5.4541 2.3337
27 1 7.9482 -3.6967 4.0004
28 1 8.5370 -5.9734 4.5927
29 1 -0.3634 0.0005 1.0277
30 1 -0.3634 0.8897 -0.5141
31 1 -0.3634 -0.8902 -0.5134
32 1 5.0830 1.7175 -1.0262
33 1 4.5546 2.4352 0.5146
34 1 5.6086 1.0010 0.5161
35 1 0.9006 -2.6332 -0.5189
36 1 2.5928 -3.1848 -0.5228
37 1 1.0999 -4.9070 0.9147
38 1 -0.3396 -3.3026 3.5325
39 1 -1.0056 -4.8416 2.9354
40 1 -0.3473 -4.7370 4.5862
41 1 1.0920 -6.6625 4.0817
42 1 0.5798 -6.7540 2.3794
43 1 2.1197 -8.5898 1.8402
44 1 3.8384 -8.4898 2.2911
45 1 2.5945 -8.6485 3.5546
46 1 3.3681 -6.0246 4.5716
47 1 6.0889 -4.9102 6.1475
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001134889496.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:51
Heat of formation + Delta-G solvation = 32.880403 kcal
Electronic energy + Delta-G solvation = -28669.513362 eV
Core-core repulsion = 24722.001152 eV
Total energy + Delta-G solvation = -3947.512209 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.156 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.43278 -39.28560 -36.81384 -36.75170 -34.46039 -34.19360 -32.22735 -31.84119
-30.47995 -29.77732 -28.54887 -27.53142 -26.25178 -24.99848 -23.56520 -21.67478
-20.78886 -20.25540 -19.64605 -19.59840 -17.27336 -16.96714 -16.71804 -15.76660
-15.65915 -15.24498 -14.73125 -14.32118 -14.07304 -13.86297 -13.68464 -13.59201
-13.25408 -13.19451 -12.91520 -12.75529 -12.60465 -12.54100 -12.39027 -12.11419
-11.93851 -11.74162 -11.67688 -11.65856 -11.52165 -11.36346 -10.96963 -10.81056
-10.56418 -10.55795 -10.34494 -10.16226 -9.82910 -9.57629 -9.40234 -9.13542
-8.83486 -8.55148 -8.38212 -6.86324 -5.68460 -2.95487 1.48098 1.65695
2.52890 2.58494 3.14888 3.46033 3.50355 3.53463 3.71161 4.28196
4.65515 4.84356 4.94051 4.98502 5.01898 5.14011 5.21977 5.26032
5.35976 5.49010 5.51656 5.56808 5.61581 5.67902 5.73149 5.77120
5.82622 5.89453 5.96840 6.02128 6.07576 6.20244 6.35159 6.42759
6.47914 6.52454 6.63393 6.64761 6.81577 6.90599 7.04219 7.12933
7.52492 7.77025 7.97211 8.50083 8.75446 9.61498 10.19718 10.53739
11.54618
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.009273 B = 0.004555 C = 0.003389
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3018.634040 B = 6145.652607 C = 8261.196212
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.096 3.904
3 N -0.280 5.280
4 N -0.368 5.368
5 C 0.098 3.902
6 C 0.139 3.861
7 Cl 0.007 6.993
8 C -0.191 4.191
9 C -0.065 4.065
10 C 0.515 3.485
11 O -0.524 6.524
12 N -0.720 5.720
13 C 0.145 3.855
14 H 0.104 0.896
15 C -0.160 4.160
16 C -0.130 4.130
17 C 0.172 3.828
18 H 0.046 0.954
19 C -0.165 4.165
20 N -0.720 5.720
21 C -0.229 4.229
22 H 0.067 0.933
23 C -0.011 4.011
24 N -0.931 5.931
25 Si 0.897 3.103
26 H -0.282 1.282
27 H -0.292 1.292
28 H -0.292 1.292
29 H 0.081 0.919
30 H 0.074 0.926
31 H 0.078 0.922
32 H 0.077 0.923
33 H 0.094 0.906
34 H 0.089 0.911
35 H 0.100 0.900
36 H 0.099 0.901
37 H 0.392 0.608
38 H 0.055 0.945
39 H 0.049 0.951
40 H 0.061 0.939
41 H 0.073 0.927
42 H 0.060 0.940
43 H 0.034 0.966
44 H 0.051 0.949
45 H 0.045 0.955
46 H 0.383 0.617
47 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.908 7.108 -14.789 19.704
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.069 4.069
3 N -0.104 5.104
4 N -0.152 5.152
5 C -0.043 4.043
6 C -0.014 4.014
7 Cl 0.035 6.965
8 C -0.204 4.204
9 C -0.106 4.106
10 C 0.300 3.700
11 O -0.398 6.398
12 N -0.371 5.371
13 C 0.041 3.959
14 H 0.122 0.878
15 C -0.218 4.218
16 C -0.169 4.169
17 C 0.062 3.938
18 H 0.064 0.936
19 C -0.226 4.226
20 N -0.361 5.361
21 C -0.361 4.361
22 H 0.084 0.916
23 C -0.207 4.207
24 N -0.579 5.579
25 Si 0.729 3.271
26 H -0.207 1.207
27 H -0.220 1.220
28 H -0.220 1.220
29 H 0.100 0.900
30 H 0.092 0.908
31 H 0.097 0.903
32 H 0.096 0.904
33 H 0.112 0.888
34 H 0.108 0.892
35 H 0.118 0.882
36 H 0.117 0.883
37 H 0.226 0.774
38 H 0.074 0.926
39 H 0.068 0.932
40 H 0.080 0.920
41 H 0.092 0.908
42 H 0.079 0.921
43 H 0.053 0.947
44 H 0.070 0.930
45 H 0.064 0.936
46 H 0.216 0.784
47 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -10.235 8.973 -14.184 19.658
hybrid contribution 1.332 -1.063 -0.153 1.711
sum -8.902 7.910 -14.337 18.638
Atomic orbital electron populations
1.20201 0.86244 1.03145 1.03479 1.22018 0.96924 0.89584 0.98423
1.77408 0.85121 1.21690 1.26171 1.48348 1.06201 1.02777 1.57831
1.21934 0.83813 0.95004 1.03555 1.21480 0.90689 0.83924 1.05316
1.98453 1.37625 1.63683 1.96768 1.18860 0.89633 0.95590 1.16274
1.19959 1.03297 0.91841 0.95498 1.20386 0.76696 0.81992 0.90954
1.90726 1.48417 1.54958 1.45740 1.45957 1.69288 1.13129 1.08768
1.20974 0.97516 0.94495 0.82956 0.87848 1.22173 0.97051 1.01679
1.00901 1.22158 0.98404 0.94085 1.02243 1.20216 0.88080 0.91677
0.93829 0.93587 1.22459 1.00596 0.99583 0.99912 1.42396 1.06935
1.77684 1.09113 1.19172 0.86183 1.35695 0.95007 0.91551 1.24652
0.97828 1.02449 0.95769 1.69651 1.34089 1.52012 1.02191 0.86263
0.85916 0.77597 0.77368 1.20736 1.21969 1.21966 0.90028 0.90757
0.90341 0.90423 0.88750 0.89206 0.88176 0.88299 0.77440 0.92602
0.93226 0.91984 0.90830 0.92127 0.94745 0.92994 0.93592 0.78373
0.93724
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.72 10.26 36.01 0.37 -0.35 16
2 C 0.10 1.35 7.22 -82.41 -0.59 0.75 16
3 N -0.28 -4.23 12.57 33.67 0.42 -3.81 16
4 N -0.37 -5.28 4.01 -64.91 -0.26 -5.54 16
5 C 0.10 0.99 11.31 59.85 0.68 1.66 16
6 C 0.14 2.14 7.45 -17.16 -0.13 2.01 16
7 Cl 0.01 0.10 28.34 -51.86 -1.47 -1.37 16
8 C -0.19 -2.81 4.60 -105.01 -0.48 -3.29 16
9 C -0.06 -0.81 5.83 -29.03 -0.17 -0.98 16
10 C 0.51 8.35 7.79 -10.98 -0.09 8.26 16
11 O -0.52 -11.15 15.70 5.56 0.09 -11.06 16
12 N -0.72 -10.23 4.45 -53.81 -0.24 -10.47 16
13 C 0.14 2.34 2.52 -67.93 -0.17 2.17 16
14 H 0.10 2.24 7.05 -51.93 -0.37 1.88 16
15 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16
16 C -0.13 -1.97 4.29 -26.73 -0.11 -2.09 16
17 C 0.17 3.23 2.84 -67.93 -0.19 3.04 16
18 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16
19 C -0.17 -2.87 9.49 37.16 0.35 -2.52 16
20 N -0.72 -17.66 4.49 -53.43 -0.24 -17.90 16
21 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16
22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16
24 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16
25 Si 0.90 23.05 29.55 -169.99 -5.02 18.03 16
26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
27 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16
28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16
29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.08 0.60 7.25 -51.93 -0.38 0.23 16
32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16
33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.09 0.86 7.81 -51.93 -0.41 0.46 16
35 H 0.10 0.88 7.25 -51.93 -0.38 0.51 16
36 H 0.10 1.15 7.91 -51.93 -0.41 0.74 16
37 H 0.39 4.27 8.60 -40.82 -0.35 3.92 16
38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16
39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
45 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16
46 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16
47 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16
LS Contribution 407.06 15.07 6.13 6.13
Total: -1.00 -36.14 407.06 -7.91 -44.05
By element:
Atomic # 1 Polarization: 17.63 SS G_CDS: -7.62 Total: 10.01 kcal
Atomic # 6 Polarization: 0.33 SS G_CDS: -0.43 Total: -0.10 kcal
Atomic # 7 Polarization: -66.10 SS G_CDS: 0.41 Total: -65.69 kcal
Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal
Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal
Atomic # 17 Polarization: 0.10 SS G_CDS: -1.47 Total: -1.37 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -36.14 -7.91 -44.05 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001134889496.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.930 kcal
(2) G-P(sol) polarization free energy of solvation -36.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.793 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.880 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds