Wall clock time and date at job start Sat Apr 11 2020 06:36:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30833 * 125.88540 * 2 1
4 4 N 1.40086 * 108.23335 * 179.97438 * 3 2 1
5 5 C 1.46497 * 126.03489 * 180.02562 * 4 3 2
6 6 C 1.34982 * 107.92829 * 0.02562 * 4 3 2
7 7 Cl 1.73602 * 126.14430 * 179.97438 * 6 4 3
8 8 C 1.35465 * 107.71720 * 359.97438 * 6 4 3
9 9 C 1.50699 * 126.05142 * 179.73663 * 8 6 4
10 10 C 1.50702 * 109.47083 * 90.02984 * 9 8 6
11 11 O 1.21277 * 119.99810 * 359.97438 * 10 9 8
12 12 N 1.34776 * 120.00111 * 180.02562 * 10 9 8
13 13 C 1.46500 * 119.99937 * 179.97438 * 12 10 9
14 14 H 1.08994 * 109.47236 * 325.00603 * 13 12 10
15 15 C 1.53001 * 109.46793 * 85.00412 * 13 12 10
16 16 C 1.53004 * 109.47021 * 204.99958 * 13 12 10
17 17 C 1.53000 * 109.46998 * 65.00294 * 16 13 12
18 18 H 1.08994 * 109.47286 * 304.99871 * 17 16 13
19 19 C 1.52998 * 109.47027 * 184.99590 * 17 16 13
20 20 N 1.46503 * 109.47077 * 65.00011 * 17 16 13
21 21 C 1.36932 * 119.99925 * 205.00187 * 20 17 16
22 22 H 1.07997 * 120.00222 * 359.97438 * 21 20 17
23 23 C 1.38817 * 119.99983 * 180.02562 * 21 20 17
24 24 N 1.31616 * 119.99732 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 119.99889 * 179.97438 * 23 21 20
26 26 H 1.48497 * 109.47088 * 359.97438 * 25 23 21
27 27 H 1.48494 * 109.47260 * 119.99776 * 25 23 21
28 28 H 1.48506 * 109.46885 * 239.99953 * 25 23 21
29 29 H 1.09007 * 109.47096 * 270.02682 * 1 2 3
30 30 H 1.08994 * 109.47522 * 30.02257 * 1 2 3
31 31 H 1.09001 * 109.47447 * 150.02708 * 1 2 3
32 32 H 1.09000 * 109.47174 * 269.96180 * 5 4 3
33 33 H 1.08997 * 109.47330 * 29.96100 * 5 4 3
34 34 H 1.09001 * 109.46988 * 149.96002 * 5 4 3
35 35 H 1.08999 * 109.47316 * 210.02893 * 9 8 6
36 36 H 1.08997 * 109.46997 * 330.02946 * 9 8 6
37 37 H 0.97000 * 120.00196 * 0.02562 * 12 10 9
38 38 H 1.09001 * 109.46737 * 299.99751 * 15 13 12
39 39 H 1.09000 * 109.47687 * 59.99800 * 15 13 12
40 40 H 1.09004 * 109.47362 * 180.02562 * 15 13 12
41 41 H 1.08997 * 109.46792 * 185.00179 * 16 13 12
42 42 H 1.09000 * 109.46911 * 305.00287 * 16 13 12
43 43 H 1.09001 * 109.46666 * 60.00163 * 19 17 16
44 44 H 1.08996 * 109.47359 * 179.97438 * 19 17 16
45 45 H 1.08994 * 109.47317 * 300.00262 * 19 17 16
46 46 H 0.96999 * 119.99632 * 24.99388 * 20 17 16
47 47 H 0.97005 * 119.99778 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2739 1.0600 0.0000
4 7 3.6088 0.6352 0.0006
5 6 4.7893 1.5028 0.0013
6 6 3.6153 -0.7146 0.0004
7 17 5.0221 -1.7318 0.0003
8 6 2.3269 -1.1331 0.0002
9 6 1.8598 -2.5658 -0.0056
10 6 1.7053 -3.0496 1.4133
11 8 1.9509 -2.3045 2.3381
12 7 1.2953 -4.3106 1.6544
13 6 1.1457 -4.7811 3.0337
14 1 1.9150 -4.3268 3.6580
15 6 -0.2361 -4.3874 3.5597
16 6 1.2911 -6.3037 3.0719
17 6 2.7142 -6.6905 2.6644
18 1 2.9444 -6.2561 1.6916
19 6 2.8247 -8.2142 2.5818
20 7 3.6618 -6.1856 3.6612
21 6 4.9618 -5.9407 3.3076
22 1 5.2887 -6.1202 2.2941
23 6 5.8598 -5.4628 4.2522
24 7 5.4614 -5.2446 5.4875
25 14 7.6334 -5.1295 3.7700
26 1 7.8252 -5.4541 2.3337
27 1 7.9482 -3.6967 4.0004
28 1 8.5370 -5.9734 4.5927
29 1 -0.3634 0.0005 1.0277
30 1 -0.3634 0.8897 -0.5141
31 1 -0.3634 -0.8902 -0.5134
32 1 5.0830 1.7175 -1.0262
33 1 4.5546 2.4352 0.5146
34 1 5.6086 1.0010 0.5161
35 1 0.9006 -2.6332 -0.5189
36 1 2.5928 -3.1848 -0.5228
37 1 1.0999 -4.9070 0.9147
38 1 -0.3396 -3.3026 3.5325
39 1 -1.0056 -4.8416 2.9354
40 1 -0.3473 -4.7370 4.5862
41 1 1.0920 -6.6625 4.0817
42 1 0.5798 -6.7540 2.3794
43 1 2.1197 -8.5898 1.8402
44 1 3.8384 -8.4898 2.2911
45 1 2.5945 -8.6485 3.5546
46 1 3.3681 -6.0246 4.5716
47 1 6.0889 -4.9102 6.1475
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001134889496.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:50
Heat of formation + Delta-G solvation = 7.760181 kcal
Electronic energy + Delta-G solvation = -28670.602656 eV
Core-core repulsion = 24722.001152 eV
Total energy + Delta-G solvation = -3948.601504 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.156 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.47735 -40.57030 -38.24060 -37.96609 -35.97669 -35.27804 -33.97442 -33.09812
-31.74091 -30.65293 -30.36743 -28.55385 -27.52868 -25.94971 -25.62032 -22.88760
-21.96260 -21.51215 -21.07931 -20.69793 -19.25697 -18.07594 -17.93034 -17.07680
-16.72877 -16.59625 -16.29290 -15.65394 -15.60021 -15.33847 -15.02551 -14.62711
-14.43754 -14.29993 -14.19432 -14.06405 -13.60498 -13.56904 -13.50658 -13.30465
-13.23126 -13.10620 -12.94101 -12.80688 -12.70602 -12.68171 -12.61376 -12.50602
-12.17125 -12.15448 -11.76986 -11.61016 -11.51297 -11.35622 -10.90976 -10.73263
-10.18140 -9.82335 -9.45530 -8.91773 -7.90831 -5.14747 0.36285 0.57315
1.39199 1.40600 1.47513 1.48732 1.62826 1.91727 2.54897 2.57356
3.34521 3.44548 3.87749 3.91695 3.96936 4.04482 4.12149 4.19825
4.25785 4.29059 4.38675 4.49081 4.50379 4.62060 4.65250 4.76846
4.81711 4.85283 4.86052 4.89667 4.98612 5.00752 5.01959 5.10370
5.15140 5.31997 5.41945 5.49587 5.54701 5.56989 5.67057 5.68089
5.81160 6.32856 6.47946 6.84323 7.38599 7.58190 8.20306 8.39132
9.33612
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.009273 B = 0.004555 C = 0.003389
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3018.634040 B = 6145.652607 C = 8261.196212
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C 0.089 3.911
3 N -0.303 5.303
4 N -0.374 5.374
5 C 0.088 3.912
6 C 0.119 3.881
7 Cl -0.002 7.002
8 C -0.204 4.204
9 C -0.057 4.057
10 C 0.510 3.490
11 O -0.583 6.583
12 N -0.706 5.706
13 C 0.148 3.852
14 H 0.040 0.960
15 C -0.149 4.149
16 C -0.117 4.117
17 C 0.164 3.836
18 H 0.046 0.954
19 C -0.156 4.156
20 N -0.731 5.731
21 C -0.215 4.215
22 H 0.070 0.930
23 C -0.077 4.077
24 N -0.969 5.969
25 Si 0.950 3.050
26 H -0.265 1.265
27 H -0.302 1.302
28 H -0.293 1.293
29 H 0.075 0.925
30 H 0.088 0.912
31 H 0.106 0.894
32 H 0.101 0.899
33 H 0.104 0.896
34 H 0.089 0.911
35 H 0.145 0.855
36 H 0.109 0.891
37 H 0.413 0.587
38 H 0.037 0.963
39 H 0.085 0.915
40 H 0.062 0.938
41 H 0.070 0.930
42 H 0.108 0.892
43 H 0.078 0.922
44 H 0.028 0.972
45 H 0.039 0.961
46 H 0.369 0.631
47 H 0.245 0.755
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.961 5.879 -17.461 22.526
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.077 4.077
3 N -0.127 5.127
4 N -0.159 5.159
5 C -0.051 4.051
6 C -0.035 4.035
7 Cl 0.026 6.974
8 C -0.217 4.217
9 C -0.098 4.098
10 C 0.297 3.703
11 O -0.462 6.462
12 N -0.359 5.359
13 C 0.043 3.957
14 H 0.058 0.942
15 C -0.207 4.207
16 C -0.155 4.155
17 C 0.056 3.944
18 H 0.064 0.936
19 C -0.216 4.216
20 N -0.371 5.371
21 C -0.348 4.348
22 H 0.088 0.912
23 C -0.269 4.269
24 N -0.622 5.622
25 Si 0.781 3.219
26 H -0.189 1.189
27 H -0.230 1.230
28 H -0.220 1.220
29 H 0.093 0.907
30 H 0.106 0.894
31 H 0.125 0.875
32 H 0.119 0.881
33 H 0.123 0.877
34 H 0.108 0.892
35 H 0.163 0.837
36 H 0.127 0.873
37 H 0.250 0.750
38 H 0.056 0.944
39 H 0.103 0.897
40 H 0.081 0.919
41 H 0.089 0.911
42 H 0.127 0.873
43 H 0.096 0.904
44 H 0.047 0.953
45 H 0.058 0.942
46 H 0.200 0.800
47 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -12.315 7.687 -16.943 22.312
hybrid contribution 1.908 -0.696 0.623 2.124
sum -10.408 6.991 -16.320 20.580
Atomic orbital electron populations
1.20362 0.83656 1.05292 1.03628 1.22649 0.98603 0.88998 0.97401
1.77355 0.85667 1.22635 1.27057 1.48689 1.06829 1.02896 1.57444
1.22227 0.82747 0.94874 1.05294 1.21729 0.90862 0.84539 1.06328
1.98437 1.38131 1.63972 1.96880 1.19253 0.89575 0.96853 1.16040
1.20042 1.05908 0.90635 0.93212 1.21053 0.75453 0.81895 0.91863
1.90711 1.51059 1.56623 1.47833 1.45825 1.68348 1.12962 1.08745
1.20734 0.97031 0.94788 0.83116 0.94171 1.22059 0.96299 1.00717
1.01655 1.22066 0.96827 0.93295 1.03354 1.20535 0.89000 0.92568
0.92320 0.93570 1.22309 1.00477 0.97875 1.00944 1.42626 1.06934
1.77875 1.09671 1.19511 0.87546 1.33001 0.94728 0.91182 1.25342
1.01443 1.04065 0.96031 1.69801 1.34891 1.54304 1.03167 0.85383
0.82000 0.76603 0.77886 1.18922 1.23049 1.22002 0.90673 0.89351
0.87530 0.88064 0.87742 0.89196 0.83695 0.87252 0.75002 0.94422
0.89654 0.91895 0.91105 0.87325 0.90363 0.95276 0.94151 0.79984
0.94582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.27 10.26 71.24 0.73 -0.54 16
2 C 0.09 2.40 7.22 43.10 0.31 2.71 16
3 N -0.30 -9.04 12.57 -47.39 -0.60 -9.64 16
4 N -0.37 -10.74 4.01 -359.27 -1.44 -12.18 16
5 C 0.09 1.76 11.31 127.77 1.44 3.21 16
6 C 0.12 3.65 7.45 83.57 0.62 4.28 16
7 Cl 0.00 -0.07 28.34 -2.72 -0.08 -0.15 16
8 C -0.20 -5.81 4.60 -20.11 -0.09 -5.90 16
9 C -0.06 -1.31 5.83 29.10 0.17 -1.14 16
10 C 0.51 16.05 7.79 87.66 0.68 16.74 16
11 O -0.58 -25.46 15.70 -3.02 -0.05 -25.51 16
12 N -0.71 -18.56 4.45 -442.53 -1.97 -20.53 16
13 C 0.15 4.63 2.52 44.99 0.11 4.74 16
14 H 0.04 1.80 7.05 -2.39 -0.02 1.79 16
15 C -0.15 -3.82 9.48 71.98 0.68 -3.14 16
16 C -0.12 -3.22 4.29 30.60 0.13 -3.09 16
17 C 0.16 5.84 2.84 44.99 0.13 5.97 16
18 H 0.05 1.66 7.56 -2.39 -0.02 1.64 16
19 C -0.16 -4.99 9.49 71.98 0.68 -4.31 16
20 N -0.73 -36.19 4.49 -322.94 -1.45 -37.65 16
21 C -0.22 -12.07 9.93 84.04 0.83 -11.23 16
22 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16
23 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16
24 N -0.97 -61.91 13.06 21.65 0.28 -61.62 16
25 Si 0.95 48.30 29.55 68.60 2.03 50.33 16
26 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16
27 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16
28 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16
29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16
30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
31 H 0.11 1.25 7.25 -2.39 -0.02 1.23 16
32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16
34 H 0.09 1.76 7.81 -2.39 -0.02 1.74 16
35 H 0.15 1.93 7.25 -2.39 -0.02 1.92 16
36 H 0.11 2.28 7.91 -2.39 -0.02 2.27 16
37 H 0.41 7.34 8.60 -92.71 -0.80 6.55 16
38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16
39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16
41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
42 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16
43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16
46 H 0.37 20.15 7.80 -92.71 -0.72 19.43 16
47 H 0.25 15.36 8.31 -92.70 -0.77 14.59 16
Total: -1.00 -83.45 407.06 3.10 -80.35
By element:
Atomic # 1 Polarization: 32.96 SS G_CDS: -0.53 Total: 32.43 kcal
Atomic # 6 Polarization: -2.74 SS G_CDS: 6.91 Total: 4.16 kcal
Atomic # 7 Polarization: -136.44 SS G_CDS: -5.17 Total: -141.62 kcal
Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal
Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.33 kcal
Atomic # 17 Polarization: -0.07 SS G_CDS: -0.08 Total: -0.15 kcal
Total: -83.45 3.10 -80.35 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001134889496.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.108 kcal
(2) G-P(sol) polarization free energy of solvation -83.451 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.657 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.760 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds