Wall clock time and date at job start Sat Apr 11 2020 06:36:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86797 * 120.00219 * 2 1
4 4 H 1.48500 * 109.47155 * 270.00267 * 3 2 1
5 5 H 1.48498 * 109.47134 * 30.00273 * 3 2 1
6 6 H 1.48503 * 109.47021 * 150.00309 * 3 2 1
7 7 C 1.38816 * 119.99889 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99912 * 179.97438 * 7 2 1
9 9 N 1.36942 * 119.99912 * 0.02562 * 7 2 1
10 10 C 1.46701 * 125.31865 * 179.97438 * 9 7 2
11 11 C 1.54049 * 106.82706 * 161.79653 * 10 9 7
12 12 H 1.08999 * 113.43585 * 262.67189 * 11 10 9
13 13 C 1.55122 * 108.25964 * 135.80623 * 11 10 9
14 14 C 1.54858 * 101.77617 * 286.09436 * 13 11 10
15 15 N 1.47395 * 104.81108 * 322.81211 * 14 13 11
16 16 C 1.34783 * 125.59077 * 204.60824 * 15 14 13
17 17 O 1.21276 * 119.99990 * 184.81327 * 16 15 14
18 18 C 1.50698 * 119.99928 * 4.81777 * 16 15 14
19 19 H 1.09004 * 109.69893 * 25.13266 * 18 16 15
20 20 C 1.53409 * 109.70067 * 145.69676 * 18 16 15
21 21 O 1.42829 * 108.37650 * 184.48096 * 20 18 16
22 22 C 1.35840 * 117.86643 * 310.87779 * 21 20 18
23 23 C 1.39144 * 118.49891 * 196.99958 * 22 21 20
24 24 C 1.37969 * 120.21910 * 180.20463 * 23 22 21
25 25 C 1.38283 * 119.95902 * 359.97438 * 24 23 22
26 26 C 1.38102 * 119.98376 * 359.91653 * 25 24 23
27 27 C 1.38372 * 121.81148 * 17.05459 * 22 21 20
28 28 C 1.50777 * 121.40876 * 359.69465 * 27 22 21
29 29 C 1.46728 * 108.82307 * 24.87398 * 15 14 13
30 30 H 1.08997 * 111.33667 * 235.86107 * 29 15 14
31 31 C 1.46630 * 125.32390 * 359.96901 * 9 7 2
32 32 H 0.96996 * 119.99953 * 359.97438 * 1 2 3
33 33 H 1.08998 * 109.99148 * 42.45953 * 10 9 7
34 34 H 1.09002 * 110.02474 * 281.15550 * 10 9 7
35 35 H 1.08995 * 110.97049 * 167.97254 * 13 11 10
36 36 H 1.09003 * 110.96913 * 44.21102 * 13 11 10
37 37 H 1.09007 * 110.36969 * 203.98086 * 14 13 11
38 38 H 1.09000 * 110.46600 * 81.69538 * 14 13 11
39 39 H 1.08999 * 109.68125 * 64.75874 * 20 18 16
40 40 H 1.08996 * 109.71215 * 304.22071 * 20 18 16
41 41 H 1.08004 * 119.88918 * 0.17429 * 23 22 21
42 42 H 1.08004 * 120.02068 * 179.97438 * 24 23 22
43 43 H 1.08004 * 120.00845 * 179.89927 * 25 24 23
44 44 H 1.08001 * 119.84188 * 180.02562 * 26 25 24
45 45 H 1.08994 * 109.43835 * 257.67370 * 28 27 22
46 46 H 1.09000 * 109.40099 * 137.77300 * 28 27 22
47 47 H 1.08994 * 109.76048 * 300.95898 * 31 9 7
48 48 H 1.09006 * 109.75290 * 61.65426 * 31 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4477 2.6526 0.7001
6 1 3.5478 1.4400 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0010
9 7 1.3255 -2.3881 -0.0016
10 6 1.9380 -3.7211 -0.0028
11 6 0.8514 -4.7116 0.4570
12 1 0.9100 -4.9581 1.5171
13 6 0.9031 -5.9545 -0.4698
14 6 0.2745 -5.4031 -1.7733
15 7 -0.7937 -4.4937 -1.3211
16 6 -1.8864 -4.1521 -2.0324
17 8 -2.6597 -3.3258 -1.5966
18 6 -2.1472 -4.7970 -3.3692
19 1 -1.6607 -5.7717 -3.4081
20 6 -3.6579 -4.9644 -3.5767
21 8 -3.8689 -5.6706 -4.8001
22 6 -3.2111 -5.2353 -5.9060
23 6 -3.6582 -5.6584 -7.1539
24 6 -3.0139 -5.2413 -8.3004
25 6 -1.9204 -4.3997 -8.2108
26 6 -1.4752 -3.9759 -6.9741
27 6 -2.1182 -4.3910 -5.8196
28 6 -1.6046 -3.9044 -4.4882
29 6 -0.4693 -4.0162 0.0279
30 1 -1.2758 -4.2307 0.7291
31 6 -0.1345 -2.5241 -0.0016
32 1 -0.4850 0.8400 0.0004
33 1 2.7803 -3.7448 0.6887
34 1 2.2739 -3.9767 -1.0078
35 1 0.3050 -6.7697 -0.0628
36 1 1.9319 -6.2734 -0.6376
37 1 -0.1451 -6.2163 -2.3657
38 1 1.0179 -4.8565 -2.3534
39 1 -4.1317 -3.9844 -3.6321
40 1 -4.0823 -5.5310 -2.7478
41 1 -4.5122 -6.3158 -7.2252
42 1 -3.3634 -5.5720 -9.2674
43 1 -1.4144 -4.0740 -9.1077
44 1 -0.6212 -3.3183 -6.9067
45 1 -1.9337 -2.8782 -4.3255
46 1 -0.5152 -3.9408 -4.4852
47 1 -0.5503 -2.0337 0.8785
48 1 -0.5466 -2.0724 -0.9041
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001076013875.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:15
Heat of formation + Delta-G solvation = -10.390362 kcal
Electronic energy + Delta-G solvation = -30783.704948 eV
Core-core repulsion = 26804.456477 eV
Total energy + Delta-G solvation = -3979.248472 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.06806 -40.05506 -38.12703 -37.38287 -34.85964 -34.24402 -32.18279 -30.90836
-30.85237 -30.36259 -28.79740 -26.47509 -25.87781 -24.79598 -24.43144 -22.78479
-22.39454 -21.00315 -20.24801 -19.47495 -18.47798 -17.96702 -17.35121 -16.72977
-16.53262 -16.04298 -15.55317 -15.16468 -14.83964 -14.54706 -14.30281 -14.19525
-13.88998 -13.80140 -13.57572 -13.27960 -13.23089 -13.19139 -12.80009 -12.58778
-12.18311 -11.93279 -11.87034 -11.60858 -11.58373 -11.28419 -11.14191 -11.01968
-10.88230 -10.73890 -10.65776 -10.47851 -10.25166 -10.17544 -9.88725 -9.69882
-9.39632 -8.92198 -8.58175 -8.28599 -8.22074 -6.80834 -5.67135 -3.03308
1.17463 1.29519 2.85251 3.04416 3.32976 3.40637 3.45177 3.48029
3.63776 4.38387 4.48830 4.51825 4.56061 4.71843 4.73951 4.75123
4.94747 4.95879 5.07277 5.13494 5.23207 5.32042 5.44293 5.47037
5.48025 5.49878 5.52995 5.59318 5.71873 5.72991 5.81147 5.82841
5.85046 5.96568 5.99644 6.15031 6.18525 6.29294 6.33948 6.39701
6.44734 6.53374 6.61772 6.63514 6.83788 7.31488 7.54626 7.65816
7.87528 7.93237 8.29794 8.47881 9.24175 9.85245 10.48479 11.42538
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.012386 B = 0.003342 C = 0.002974
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2260.077960 B = 8375.737436 C = 9412.961290
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.914 5.914
2 C -0.005 4.005
3 Si 0.910 3.090
4 H -0.289 1.289
5 H -0.290 1.290
6 H -0.281 1.281
7 C -0.234 4.234
8 H 0.077 0.923
9 N -0.602 5.602
10 C 0.142 3.858
11 C -0.110 4.110
12 H 0.098 0.902
13 C -0.124 4.124
14 C 0.099 3.901
15 N -0.599 5.599
16 C 0.536 3.464
17 O -0.525 6.525
18 C -0.141 4.141
19 H 0.100 0.900
20 C 0.081 3.919
21 O -0.314 6.314
22 C 0.130 3.870
23 C -0.150 4.150
24 C -0.092 4.092
25 C -0.153 4.153
26 C -0.082 4.082
27 C -0.151 4.151
28 C -0.066 4.066
29 C 0.115 3.885
30 H 0.078 0.922
31 C 0.176 3.824
32 H 0.253 0.747
33 H 0.034 0.966
34 H 0.018 0.982
35 H 0.071 0.929
36 H 0.082 0.918
37 H 0.070 0.930
38 H 0.072 0.928
39 H 0.080 0.920
40 H 0.112 0.888
41 H 0.129 0.871
42 H 0.126 0.874
43 H 0.123 0.877
44 H 0.126 0.874
45 H 0.090 0.910
46 H 0.088 0.912
47 H 0.052 0.948
48 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.723 -15.949 -11.520 20.023
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.202 4.202
3 Si 0.741 3.259
4 H -0.217 1.217
5 H -0.217 1.217
6 H -0.207 1.207
7 C -0.363 4.363
8 H 0.095 0.905
9 N -0.329 5.329
10 C 0.016 3.984
11 C -0.130 4.130
12 H 0.117 0.883
13 C -0.162 4.162
14 C -0.024 4.024
15 N -0.333 5.333
16 C 0.323 3.677
17 O -0.401 6.401
18 C -0.163 4.163
19 H 0.119 0.881
20 C 0.006 3.994
21 O -0.227 6.227
22 C 0.085 3.915
23 C -0.169 4.169
24 C -0.110 4.110
25 C -0.171 4.171
26 C -0.100 4.100
27 C -0.152 4.152
28 C -0.104 4.104
29 C 0.012 3.988
30 H 0.096 0.904
31 C 0.050 3.950
32 H 0.063 0.937
33 H 0.052 0.948
34 H 0.035 0.965
35 H 0.090 0.910
36 H 0.101 0.899
37 H 0.088 0.912
38 H 0.090 0.910
39 H 0.098 0.902
40 H 0.130 0.870
41 H 0.147 0.853
42 H 0.144 0.856
43 H 0.141 0.859
44 H 0.144 0.856
45 H 0.108 0.892
46 H 0.107 0.893
47 H 0.070 0.930
48 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -4.406 -15.391 -11.287 19.588
hybrid contribution 0.751 1.074 0.058 1.312
sum -3.655 -14.317 -11.229 18.559
Atomic orbital electron populations
1.69991 1.04756 1.25080 1.56287 1.24835 0.95683 0.97680 1.02044
0.86151 0.78568 0.83672 0.77532 1.21656 1.21652 1.20698 1.18997
0.90331 0.82337 1.44601 0.90488 1.44227 1.01471 0.99923 1.87284
1.21301 0.93933 0.85960 0.97256 1.23158 0.95840 0.94615 0.99407
0.88348 1.22751 1.01210 0.97375 0.94896 1.22364 0.90161 0.92546
0.97339 1.48398 1.21066 1.46438 1.17403 1.19627 0.80582 0.82330
0.85194 1.90768 1.46692 1.32114 1.70525 1.21932 0.98786 1.01353
0.94180 0.88144 1.22808 0.93697 0.98604 0.84284 1.86001 1.65441
1.55008 1.16286 1.18740 0.91120 0.94767 0.86869 1.20576 1.02265
1.04369 0.89654 1.20909 0.95393 0.97037 0.97624 1.21014 0.98357
1.00269 0.97483 1.20950 0.99183 0.98491 0.91380 1.19818 0.97270
1.02007 0.96077 1.20392 1.01512 0.99625 0.88850 1.22528 0.95908
0.98225 0.82176 0.90425 1.21130 0.84256 0.87312 1.02259 0.93663
0.94768 0.96494 0.91012 0.89902 0.91194 0.90974 0.90180 0.87044
0.85326 0.85567 0.85900 0.85590 0.89152 0.89318 0.93017 0.92616
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -27.69 10.24 55.49 0.57 -27.12 16
2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16
3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16
4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
7 C -0.23 -6.55 10.25 -15.06 -0.15 -6.70 16
8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16
9 N -0.60 -15.29 3.38 -172.35 -0.58 -15.87 16
10 C 0.14 2.78 6.45 -3.38 -0.02 2.76 16
11 C -0.11 -1.76 4.35 -87.73 -0.38 -2.14 16
12 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16
13 C -0.12 -1.47 6.35 -24.63 -0.16 -1.63 16
14 C 0.10 1.29 6.25 -2.57 -0.02 1.27 16
15 N -0.60 -10.08 2.99 -162.72 -0.49 -10.57 16
16 C 0.54 9.33 6.46 -10.98 -0.07 9.26 16
17 O -0.53 -11.34 16.05 5.56 0.09 -11.25 16
18 C -0.14 -1.90 2.38 -91.52 -0.22 -2.12 16
19 H 0.10 1.18 6.39 -51.93 -0.33 0.85 16
20 C 0.08 1.05 5.90 37.37 0.22 1.27 16
21 O -0.31 -4.09 10.27 -19.24 -0.20 -4.29 16
22 C 0.13 1.66 6.47 -39.20 -0.25 1.41 16
23 C -0.15 -1.63 9.94 -39.34 -0.39 -2.03 16
24 C -0.09 -0.87 10.04 -39.66 -0.40 -1.26 16
25 C -0.15 -1.50 10.04 -39.61 -0.40 -1.90 16
26 C -0.08 -0.92 9.67 -39.53 -0.38 -1.31 16
27 C -0.15 -1.91 5.75 -104.43 -0.60 -2.51 16
28 C -0.07 -0.90 5.18 -27.81 -0.14 -1.05 16
29 C 0.12 2.19 3.58 -66.61 -0.24 1.96 16
30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16
31 C 0.18 4.40 4.87 -4.00 -0.02 4.38 16
32 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16
33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16
34 H 0.02 0.33 6.53 -51.93 -0.34 -0.01 16
35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16
37 H 0.07 0.72 6.60 -51.93 -0.34 0.38 16
38 H 0.07 1.01 7.19 -51.93 -0.37 0.64 16
39 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16
40 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16
41 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16
42 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16
43 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16
44 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16
45 H 0.09 1.40 8.09 -51.93 -0.42 0.98 16
46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
47 H 0.05 1.47 7.33 -51.93 -0.38 1.09 16
48 H 0.06 1.61 6.52 -51.93 -0.34 1.27 16
LS Contribution 375.17 15.07 5.65 5.65
Total: -1.00 -33.76 375.17 -10.83 -44.59
By element:
Atomic # 1 Polarization: 9.23 SS G_CDS: -7.14 Total: 2.09 kcal
Atomic # 6 Polarization: 3.13 SS G_CDS: -3.72 Total: -0.59 kcal
Atomic # 7 Polarization: -53.06 SS G_CDS: -0.50 Total: -53.56 kcal
Atomic # 8 Polarization: -15.44 SS G_CDS: -0.11 Total: -15.55 kcal
Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -33.76 -10.83 -44.59 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001076013875.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.204 kcal
(2) G-P(sol) polarization free energy of solvation -33.761 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.390 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds