Wall clock time and date at job start Sat Apr 11 2020 06:36:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86797 * 120.00219 * 2 1
4 4 H 1.48500 * 109.47155 * 270.00267 * 3 2 1
5 5 H 1.48498 * 109.47134 * 30.00273 * 3 2 1
6 6 H 1.48503 * 109.47021 * 150.00309 * 3 2 1
7 7 C 1.38816 * 119.99889 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99912 * 179.97438 * 7 2 1
9 9 N 1.36942 * 119.99912 * 0.02562 * 7 2 1
10 10 C 1.46701 * 125.31865 * 179.97438 * 9 7 2
11 11 C 1.54049 * 106.82706 * 161.79653 * 10 9 7
12 12 H 1.08999 * 113.43585 * 262.67189 * 11 10 9
13 13 C 1.55122 * 108.25964 * 135.80623 * 11 10 9
14 14 C 1.54858 * 101.77617 * 286.09436 * 13 11 10
15 15 N 1.47395 * 104.81108 * 322.81211 * 14 13 11
16 16 C 1.34783 * 125.59077 * 204.60824 * 15 14 13
17 17 O 1.21276 * 119.99990 * 184.81327 * 16 15 14
18 18 C 1.50698 * 119.99928 * 4.81777 * 16 15 14
19 19 H 1.09004 * 109.69893 * 25.13266 * 18 16 15
20 20 C 1.53409 * 109.70067 * 145.69676 * 18 16 15
21 21 O 1.42829 * 108.37650 * 184.48096 * 20 18 16
22 22 C 1.35840 * 117.86643 * 310.87779 * 21 20 18
23 23 C 1.39144 * 118.49891 * 196.99958 * 22 21 20
24 24 C 1.37969 * 120.21910 * 180.20463 * 23 22 21
25 25 C 1.38283 * 119.95902 * 359.97438 * 24 23 22
26 26 C 1.38102 * 119.98376 * 359.91653 * 25 24 23
27 27 C 1.38372 * 121.81148 * 17.05459 * 22 21 20
28 28 C 1.50777 * 121.40876 * 359.69465 * 27 22 21
29 29 C 1.46728 * 108.82307 * 24.87398 * 15 14 13
30 30 H 1.08997 * 111.33667 * 235.86107 * 29 15 14
31 31 C 1.46630 * 125.32390 * 359.96901 * 9 7 2
32 32 H 0.96996 * 119.99953 * 359.97438 * 1 2 3
33 33 H 1.08998 * 109.99148 * 42.45953 * 10 9 7
34 34 H 1.09002 * 110.02474 * 281.15550 * 10 9 7
35 35 H 1.08995 * 110.97049 * 167.97254 * 13 11 10
36 36 H 1.09003 * 110.96913 * 44.21102 * 13 11 10
37 37 H 1.09007 * 110.36969 * 203.98086 * 14 13 11
38 38 H 1.09000 * 110.46600 * 81.69538 * 14 13 11
39 39 H 1.08999 * 109.68125 * 64.75874 * 20 18 16
40 40 H 1.08996 * 109.71215 * 304.22071 * 20 18 16
41 41 H 1.08004 * 119.88918 * 0.17429 * 23 22 21
42 42 H 1.08004 * 120.02068 * 179.97438 * 24 23 22
43 43 H 1.08004 * 120.00845 * 179.89927 * 25 24 23
44 44 H 1.08001 * 119.84188 * 180.02562 * 26 25 24
45 45 H 1.08994 * 109.43835 * 257.67370 * 28 27 22
46 46 H 1.09000 * 109.40099 * 137.77300 * 28 27 22
47 47 H 1.08994 * 109.76048 * 300.95898 * 31 9 7
48 48 H 1.09006 * 109.75290 * 61.65426 * 31 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4477 2.6526 0.7001
6 1 3.5478 1.4400 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0010
9 7 1.3255 -2.3881 -0.0016
10 6 1.9380 -3.7211 -0.0028
11 6 0.8514 -4.7116 0.4570
12 1 0.9100 -4.9581 1.5171
13 6 0.9031 -5.9545 -0.4698
14 6 0.2745 -5.4031 -1.7733
15 7 -0.7937 -4.4937 -1.3211
16 6 -1.8864 -4.1521 -2.0324
17 8 -2.6597 -3.3258 -1.5966
18 6 -2.1472 -4.7970 -3.3692
19 1 -1.6607 -5.7717 -3.4081
20 6 -3.6579 -4.9644 -3.5767
21 8 -3.8689 -5.6706 -4.8001
22 6 -3.2111 -5.2353 -5.9060
23 6 -3.6582 -5.6584 -7.1539
24 6 -3.0139 -5.2413 -8.3004
25 6 -1.9204 -4.3997 -8.2108
26 6 -1.4752 -3.9759 -6.9741
27 6 -2.1182 -4.3910 -5.8196
28 6 -1.6046 -3.9044 -4.4882
29 6 -0.4693 -4.0162 0.0279
30 1 -1.2758 -4.2307 0.7291
31 6 -0.1345 -2.5241 -0.0016
32 1 -0.4850 0.8400 0.0004
33 1 2.7803 -3.7448 0.6887
34 1 2.2739 -3.9767 -1.0078
35 1 0.3050 -6.7697 -0.0628
36 1 1.9319 -6.2734 -0.6376
37 1 -0.1451 -6.2163 -2.3657
38 1 1.0179 -4.8565 -2.3534
39 1 -4.1317 -3.9844 -3.6321
40 1 -4.0823 -5.5310 -2.7478
41 1 -4.5122 -6.3158 -7.2252
42 1 -3.3634 -5.5720 -9.2674
43 1 -1.4144 -4.0740 -9.1077
44 1 -0.6212 -3.3183 -6.9067
45 1 -1.9337 -2.8782 -4.3255
46 1 -0.5152 -3.9408 -4.4852
47 1 -0.5503 -2.0337 0.8785
48 1 -0.5466 -2.0724 -0.9041
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001076013875.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:14
Heat of formation + Delta-G solvation = -31.321011 kcal
Electronic energy + Delta-G solvation = -30784.612569 eV
Core-core repulsion = 26804.456477 eV
Total energy + Delta-G solvation = -3980.156093 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.18687 -41.30925 -39.48989 -38.36657 -36.58078 -35.39303 -33.91551 -32.48092
-31.85658 -31.24235 -30.47024 -28.02735 -26.89426 -26.63875 -25.62091 -23.82263
-23.44050 -22.60652 -21.51994 -20.79709 -19.81288 -19.09552 -18.78013 -18.36913
-17.61443 -17.20353 -16.84441 -16.62715 -16.19411 -15.70877 -15.69174 -15.43842
-15.38886 -14.90189 -14.73500 -14.64542 -14.40280 -14.24907 -14.12932 -13.91671
-13.87235 -13.39630 -13.01290 -12.92876 -12.84197 -12.75801 -12.58113 -12.45468
-12.22638 -12.14639 -11.94805 -11.87314 -11.81832 -11.63570 -11.60312 -11.40382
-10.87303 -10.70558 -9.77858 -9.67072 -9.17607 -8.91341 -7.85656 -5.24068
0.32902 0.44246 1.40630 1.43310 1.47614 1.52456 1.84681 2.27442
2.46275 2.78364 3.24012 3.31094 3.40583 3.50284 3.56203 3.63514
3.76233 3.79793 3.89098 3.98607 4.01399 4.23952 4.25352 4.33098
4.37864 4.42579 4.47339 4.52569 4.57606 4.58394 4.62361 4.70190
4.79883 4.82024 4.84791 4.93509 5.06739 5.10457 5.17091 5.27404
5.32581 5.39485 5.43348 5.50016 5.58567 5.61319 5.78647 5.83367
6.17213 6.37475 6.53698 7.05495 7.10635 7.77596 8.39051 9.22444
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.012386 B = 0.003342 C = 0.002974
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2260.077960 B = 8375.737436 C = 9412.961290
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.952 5.952
2 C -0.071 4.071
3 Si 0.978 3.022
4 H -0.287 1.287
5 H -0.298 1.298
6 H -0.262 1.262
7 C -0.241 4.241
8 H 0.088 0.912
9 N -0.624 5.624
10 C 0.134 3.866
11 C -0.097 4.097
12 H 0.118 0.882
13 C -0.105 4.105
14 C 0.090 3.910
15 N -0.600 5.600
16 C 0.529 3.471
17 O -0.580 6.580
18 C -0.125 4.125
19 H 0.129 0.871
20 C 0.085 3.915
21 O -0.315 6.315
22 C 0.106 3.894
23 C -0.155 4.155
24 C -0.085 4.085
25 C -0.150 4.150
26 C -0.094 4.094
27 C -0.166 4.166
28 C -0.061 4.061
29 C 0.117 3.883
30 H 0.076 0.924
31 C 0.195 3.805
32 H 0.242 0.758
33 H 0.044 0.956
34 H 0.031 0.969
35 H 0.101 0.899
36 H 0.113 0.887
37 H 0.108 0.892
38 H 0.062 0.938
39 H 0.058 0.942
40 H 0.126 0.874
41 H 0.144 0.856
42 H 0.160 0.840
43 H 0.149 0.851
44 H 0.131 0.869
45 H 0.056 0.944
46 H 0.091 0.909
47 H -0.001 1.001
48 H 0.003 0.997
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.952 -19.361 -13.385 23.619
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.601 5.601
2 C -0.264 4.264
3 Si 0.807 3.193
4 H -0.214 1.214
5 H -0.225 1.225
6 H -0.186 1.186
7 C -0.370 4.370
8 H 0.106 0.894
9 N -0.350 5.350
10 C 0.009 3.991
11 C -0.117 4.117
12 H 0.136 0.864
13 C -0.143 4.143
14 C -0.031 4.031
15 N -0.332 5.332
16 C 0.318 3.682
17 O -0.459 6.459
18 C -0.146 4.146
19 H 0.147 0.853
20 C 0.010 3.990
21 O -0.229 6.229
22 C 0.061 3.939
23 C -0.173 4.173
24 C -0.102 4.102
25 C -0.168 4.168
26 C -0.112 4.112
27 C -0.167 4.167
28 C -0.099 4.099
29 C 0.013 3.987
30 H 0.094 0.906
31 C 0.068 3.932
32 H 0.051 0.949
33 H 0.062 0.938
34 H 0.048 0.952
35 H 0.120 0.880
36 H 0.131 0.869
37 H 0.126 0.874
38 H 0.081 0.919
39 H 0.076 0.924
40 H 0.144 0.856
41 H 0.162 0.838
42 H 0.178 0.822
43 H 0.167 0.833
44 H 0.149 0.851
45 H 0.075 0.925
46 H 0.110 0.890
47 H 0.018 0.982
48 H 0.021 0.979
Dipole moment (debyes) X Y Z Total
from point charges -2.568 -18.873 -13.169 23.156
hybrid contribution 0.233 2.153 0.557 2.236
sum -2.336 -16.720 -12.613 21.073
Atomic orbital electron populations
1.70294 1.06576 1.24935 1.58259 1.25749 0.96452 1.01424 1.02739
0.85076 0.77806 0.79037 0.77429 1.21430 1.22496 1.18597 1.19480
0.91076 0.83627 1.42836 0.89395 1.44543 1.01839 1.01673 1.86973
1.21600 0.95222 0.84014 0.98224 1.23156 0.91551 0.95446 1.01529
0.86364 1.22797 1.03500 0.95705 0.92281 1.22694 0.89030 0.92667
0.98701 1.48493 1.21668 1.46533 1.16517 1.20372 0.80068 0.81560
0.86163 1.90739 1.48697 1.34535 1.71977 1.21853 0.99496 1.01909
0.91334 0.85325 1.22724 0.93214 0.97992 0.85093 1.86001 1.65706
1.54907 1.16244 1.19046 0.91572 0.95799 0.87457 1.20892 1.02776
1.04389 0.89267 1.21332 0.94514 0.95816 0.98566 1.21376 0.98277
0.99478 0.97667 1.21150 0.99555 0.98802 0.91733 1.19764 0.98154
1.03090 0.95706 1.20273 1.01652 0.97931 0.90026 1.22255 0.97841
0.94621 0.84016 0.90599 1.20657 0.84143 0.91020 0.97349 0.94884
0.93800 0.95155 0.88044 0.86908 0.87364 0.91929 0.92374 0.85566
0.83782 0.82223 0.83278 0.85094 0.92545 0.89016 0.98241 0.97894
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -61.71 10.24 21.65 0.22 -61.49 16
2 C -0.07 -4.22 5.48 84.86 0.47 -3.76 16
3 Si 0.98 47.55 29.55 68.60 2.03 49.58 16
4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16
5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16
6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16
7 C -0.24 -13.80 10.25 84.03 0.86 -12.94 16
8 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16
9 N -0.62 -32.57 3.38 -699.20 -2.36 -34.93 16
10 C 0.13 5.07 6.45 86.70 0.56 5.63 16
11 C -0.10 -2.87 4.35 -8.92 -0.04 -2.91 16
12 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16
13 C -0.11 -1.98 6.35 31.96 0.20 -1.78 16
14 C 0.09 2.08 6.25 86.84 0.54 2.62 16
15 N -0.60 -20.11 2.99 -787.12 -2.35 -22.46 16
16 C 0.53 19.20 6.46 87.66 0.57 19.76 16
17 O -0.58 -27.19 16.05 -3.02 -0.05 -27.23 16
18 C -0.12 -3.38 2.38 -11.38 -0.03 -3.41 16
19 H 0.13 2.73 6.39 -2.38 -0.02 2.71 16
20 C 0.09 2.26 5.90 72.12 0.43 2.68 16
21 O -0.31 -8.02 10.27 -91.75 -0.94 -8.96 16
22 C 0.11 2.61 6.47 22.52 0.15 2.75 16
23 C -0.15 -3.03 9.94 22.42 0.22 -2.81 16
24 C -0.08 -1.32 10.04 22.22 0.22 -1.10 16
25 C -0.15 -2.54 10.04 22.25 0.22 -2.32 16
26 C -0.09 -2.03 9.67 22.30 0.22 -1.82 16
27 C -0.17 -4.19 5.75 -19.74 -0.11 -4.30 16
28 C -0.06 -1.73 5.18 29.90 0.15 -1.58 16
29 C 0.12 4.55 3.58 45.72 0.16 4.72 16
30 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16
31 C 0.19 10.40 4.87 86.34 0.42 10.82 16
32 H 0.24 15.46 8.31 -92.71 -0.77 14.69 16
33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
34 H 0.03 1.10 6.53 -2.39 -0.02 1.08 16
35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16
36 H 0.11 1.59 8.08 -2.39 -0.02 1.57 16
37 H 0.11 1.72 6.60 -2.38 -0.02 1.71 16
38 H 0.06 1.59 7.19 -2.39 -0.02 1.57 16
39 H 0.06 1.77 8.03 -2.39 -0.02 1.75 16
40 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16
41 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16
42 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16
43 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16
44 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16
45 H 0.06 1.94 8.09 -2.39 -0.02 1.92 16
46 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16
47 H 0.00 -0.04 7.33 -2.39 -0.02 -0.05 16
48 H 0.00 0.18 6.52 -2.38 -0.02 0.16 16
Total: -1.00 -82.01 375.17 2.72 -79.30
By element:
Atomic # 1 Polarization: 14.97 SS G_CDS: 0.96 Total: 15.93 kcal
Atomic # 6 Polarization: 5.06 SS G_CDS: 5.21 Total: 10.27 kcal
Atomic # 7 Polarization: -114.39 SS G_CDS: -4.49 Total: -118.88 kcal
Atomic # 8 Polarization: -35.21 SS G_CDS: -0.99 Total: -36.20 kcal
Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal
Total: -82.01 2.72 -79.30 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001076013875.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.975 kcal
(2) G-P(sol) polarization free energy of solvation -82.014 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.039 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.296 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.321 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds