Wall clock time and date at job start Sat Apr 11 2020 06:36:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86800 * 120.00250 * 2 1
4 4 H 1.48495 * 109.46934 * 270.26927 * 3 2 1
5 5 H 1.48501 * 109.46920 * 30.26974 * 3 2 1
6 6 H 1.48504 * 109.47086 * 150.27007 * 3 2 1
7 7 C 1.38809 * 119.99797 * 180.26662 * 2 1 3
8 8 H 1.08000 * 120.00256 * 176.05053 * 7 2 1
9 9 N 1.36936 * 119.99973 * 356.05023 * 7 2 1
10 10 C 1.47239 * 121.39442 * 215.28730 * 9 7 2
11 11 C 1.52747 * 107.70612 * 238.33923 * 10 9 7
12 12 C 1.53087 * 110.93484 * 302.04188 * 11 10 9
13 13 H 1.08998 * 112.14591 * 287.60041 * 12 11 10
14 14 C 1.55402 * 106.23132 * 164.37502 * 12 11 10
15 15 N 1.48919 * 106.07141 * 268.59270 * 14 12 11
16 16 C 1.34773 * 125.45623 * 178.83606 * 15 14 12
17 17 O 1.21589 * 120.00142 * 185.52908 * 16 15 14
18 18 C 1.47537 * 120.00056 * 5.51980 * 16 15 14
19 19 C 1.39527 * 120.04950 * 352.78170 * 18 16 15
20 20 C 1.37784 * 120.18358 * 179.83743 * 19 18 16
21 21 C 1.38649 * 119.97717 * 0.34994 * 20 19 18
22 22 C 1.37661 * 120.31439 * 359.72573 * 21 20 19
23 23 C 1.38878 * 120.88185 * 0.27647 * 22 21 20
24 24 O 1.35849 * 111.31855 * 179.30298 * 23 22 21
25 25 C 1.43763 * 109.29621 * 18.84452 * 24 23 22
26 26 C 1.51681 * 132.13076 * 180.52384 * 22 21 20
27 27 C 1.47851 * 108.89522 * 358.81437 * 15 14 12
28 28 C 1.53852 * 103.99080 * 336.67030 * 27 15 14
29 29 H 1.09001 * 109.15556 * 283.00935 * 28 27 15
30 30 C 1.46711 * 121.39306 * 35.00873 * 9 7 2
31 31 H 0.97009 * 119.99514 * 359.73079 * 1 2 3
32 32 H 1.08997 * 109.80842 * 357.89082 * 10 9 7
33 33 H 1.09001 * 109.80925 * 118.72476 * 10 9 7
34 34 H 1.09001 * 109.18430 * 62.42127 * 11 10 9
35 35 H 1.09007 * 109.18425 * 181.66946 * 11 10 9
36 36 H 1.09003 * 109.97055 * 28.13972 * 14 12 11
37 37 H 1.09006 * 109.96940 * 149.40140 * 14 12 11
38 38 H 1.08001 * 119.90860 * 0.06106 * 19 18 16
39 39 H 1.07997 * 120.01434 * 180.08186 * 20 19 18
40 40 H 1.07997 * 119.84272 * 179.69472 * 21 20 19
41 41 H 1.09000 * 110.75348 * 90.66861 * 25 24 23
42 42 H 1.09000 * 110.75745 * 213.84744 * 25 24 23
43 43 H 1.08996 * 110.94575 * 46.13090 * 26 22 21
44 44 H 1.09002 * 110.97620 * 282.44317 * 26 22 21
45 45 H 1.08999 * 110.52798 * 218.04090 * 27 15 14
46 46 H 1.09005 * 110.64410 * 95.35101 * 27 15 14
47 47 H 1.09003 * 109.11737 * 248.30621 * 30 9 7
48 48 H 1.08997 * 109.11928 * 7.38994 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4920 2.0496 -1.4000
5 1 1.4505 2.6510 0.7058
6 1 3.5506 1.4384 0.6943
7 6 2.0101 -1.2021 -0.0056
8 1 3.0882 -1.2030 -0.0700
9 7 1.3279 -2.3870 0.0706
10 6 1.8764 -3.5424 0.8000
11 6 1.9886 -4.7036 -0.1861
12 6 0.6262 -5.0309 -0.8030
13 1 -0.0407 -5.5176 -0.0914
14 6 0.9143 -5.9159 -2.0475
15 7 1.0431 -4.9795 -3.1983
16 6 1.3169 -5.3355 -4.4690
17 8 1.4993 -4.4806 -5.3141
18 6 1.3956 -6.7627 -4.8346
19 6 1.3370 -7.7423 -3.8427
20 6 1.4069 -9.0761 -4.1814
21 6 1.5431 -9.4472 -5.5103
22 6 1.6035 -8.4888 -6.4967
23 6 1.5354 -7.1377 -6.1829
24 8 1.6283 -6.3665 -7.2974
25 6 1.3269 -7.1651 -8.4542
26 6 1.7371 -8.5874 -8.0044
27 6 0.8211 -3.5985 -2.7191
28 6 -0.0088 -3.7788 -1.4363
29 1 -1.0416 -3.9993 -1.7064
30 6 0.0170 -2.5563 -0.5661
31 1 -0.4850 0.8402 0.0039
32 1 2.8622 -3.2961 1.1944
33 1 1.2087 -3.8140 1.6176
34 1 2.6856 -4.4337 -0.9795
35 1 2.3654 -5.5826 0.3370
36 1 1.8400 -6.4727 -1.9021
37 1 0.0867 -6.6057 -2.2134
38 1 1.2329 -7.4544 -2.8070
39 1 1.3599 -9.8320 -3.4116
40 1 1.6027 -10.4931 -5.7728
41 1 0.2622 -7.1250 -8.6844
42 1 1.9182 -6.8426 -9.3111
43 1 1.0551 -9.3358 -8.4079
44 1 2.7658 -8.8054 -8.2915
45 1 0.2631 -3.0228 -3.4575
46 1 1.7706 -3.1123 -2.4948
47 1 -0.7448 -2.6584 0.2069
48 1 -0.2035 -1.6754 -1.1690
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001088116020.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:50
Heat of formation + Delta-G solvation = 18.141330 kcal
Electronic energy + Delta-G solvation = -30568.970013 eV
Core-core repulsion = 26590.958768 eV
Total energy + Delta-G solvation = -3978.011245 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.42532 -40.05669 -38.11975 -37.32862 -35.22239 -33.08789 -32.51484 -31.14478
-30.53047 -30.16161 -29.41589 -27.42836 -25.79746 -24.53729 -23.41388 -22.62975
-22.24528 -21.57151 -21.20791 -19.53921 -18.38432 -17.55851 -17.15294 -16.71390
-16.48406 -16.05022 -15.62382 -15.35483 -15.08738 -14.68533 -14.22569 -13.81703
-13.72212 -13.56858 -13.38045 -13.32669 -13.23799 -12.74652 -12.67463 -12.50878
-12.20502 -12.06399 -12.01096 -11.83885 -11.75008 -11.27271 -11.07614 -10.97753
-10.86068 -10.72386 -10.55738 -10.32490 -10.20289 -9.91331 -9.56600 -9.44833
-9.36365 -9.10879 -8.49654 -8.40382 -8.18674 -6.54743 -5.78796 -3.31161
0.74341 1.11081 2.92169 3.08095 3.21377 3.39692 3.46342 3.47325
3.74010 4.10205 4.27638 4.47987 4.49296 4.65407 4.70452 4.82271
4.92072 5.02203 5.11170 5.15887 5.17260 5.28425 5.39098 5.39681
5.42651 5.44143 5.54481 5.68366 5.70981 5.82848 5.91261 5.98175
6.03618 6.14823 6.18441 6.27150 6.36239 6.37337 6.46630 6.46749
6.59939 6.74477 6.85702 6.87322 6.97810 7.00975 7.33194 7.76337
7.79911 7.81283 8.46904 8.52009 9.24510 9.82877 10.45327 11.27888
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.018821 B = 0.002866 C = 0.002607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1487.375364 B = 9765.829590 C =10736.067762
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.011 3.989
3 Si 0.902 3.098
4 H -0.287 1.287
5 H -0.290 1.290
6 H -0.279 1.279
7 C -0.251 4.251
8 H 0.063 0.937
9 N -0.590 5.590
10 C 0.142 3.858
11 C -0.130 4.130
12 C -0.088 4.088
13 H 0.089 0.911
14 C 0.091 3.909
15 N -0.613 5.613
16 C 0.565 3.435
17 O -0.530 6.530
18 C -0.147 4.147
19 C -0.093 4.093
20 C -0.159 4.159
21 C -0.050 4.050
22 C -0.192 4.192
23 C 0.166 3.834
24 O -0.276 6.276
25 C 0.044 3.956
26 C -0.107 4.107
27 C 0.124 3.876
28 C -0.112 4.112
29 H 0.062 0.938
30 C 0.173 3.827
31 H 0.255 0.745
32 H 0.055 0.945
33 H 0.021 0.979
34 H 0.060 0.940
35 H 0.049 0.951
36 H 0.077 0.923
37 H 0.071 0.929
38 H 0.172 0.828
39 H 0.133 0.867
40 H 0.126 0.874
41 H 0.078 0.922
42 H 0.108 0.892
43 H 0.092 0.908
44 H 0.091 0.909
45 H 0.070 0.930
46 H 0.082 0.918
47 H 0.019 0.981
48 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.257 -22.212 -9.929 24.331
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.188 4.188
3 Si 0.731 3.269
4 H -0.213 1.213
5 H -0.216 1.216
6 H -0.204 1.204
7 C -0.380 4.380
8 H 0.081 0.919
9 N -0.313 5.313
10 C 0.016 3.984
11 C -0.170 4.170
12 C -0.107 4.107
13 H 0.108 0.892
14 C -0.031 4.031
15 N -0.347 5.347
16 C 0.355 3.645
17 O -0.408 6.408
18 C -0.151 4.151
19 C -0.110 4.110
20 C -0.177 4.177
21 C -0.068 4.068
22 C -0.193 4.193
23 C 0.118 3.882
24 O -0.188 6.188
25 C -0.031 4.031
26 C -0.144 4.144
27 C 0.003 3.997
28 C -0.133 4.133
29 H 0.081 0.919
30 C 0.046 3.954
31 H 0.065 0.935
32 H 0.073 0.927
33 H 0.039 0.961
34 H 0.079 0.921
35 H 0.068 0.932
36 H 0.095 0.905
37 H 0.089 0.911
38 H 0.188 0.812
39 H 0.151 0.849
40 H 0.144 0.856
41 H 0.096 0.904
42 H 0.126 0.874
43 H 0.110 0.890
44 H 0.109 0.891
45 H 0.088 0.912
46 H 0.100 0.900
47 H 0.037 0.963
48 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 0.328 -21.320 -10.516 23.774
hybrid contribution 0.372 0.509 -0.173 0.654
sum 0.700 -20.811 -10.689 23.406
Atomic orbital electron populations
1.69870 1.05329 1.25504 1.54114 1.25311 0.95540 0.98263 0.99688
0.86305 0.79164 0.83663 0.77753 1.21345 1.21570 1.20418 1.19081
0.90637 0.82902 1.45401 0.91886 1.43941 1.19806 1.09504 1.58013
1.20902 0.97494 0.87773 0.92240 1.22069 0.95518 0.99141 1.00236
1.22201 0.98097 0.95635 0.94718 0.89245 1.23203 1.00217 0.92816
0.86867 1.48994 1.69724 1.09615 1.06415 1.17745 0.77661 0.87877
0.81251 1.90824 1.49788 1.51700 1.48454 1.19306 1.11251 0.94238
0.90327 1.22705 0.94559 0.92325 1.01413 1.21014 1.04816 0.96063
0.95857 1.20471 0.95901 0.98610 0.91821 1.20776 1.09212 0.93258
0.96079 1.19495 0.91810 0.89039 0.87812 1.87033 1.83233 1.35615
1.12897 1.23933 1.01848 0.88808 0.88496 1.21794 1.03426 0.98152
0.91052 1.22224 1.01140 0.81274 0.95020 1.22102 0.97563 0.97930
0.95673 0.91913 1.20130 0.87112 0.94073 0.94039 0.93489 0.92685
0.96074 0.92115 0.93195 0.90515 0.91073 0.81170 0.84917 0.85583
0.90380 0.87380 0.88985 0.89085 0.91174 0.89965 0.96271 0.87880
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.59 10.67 55.49 0.59 -25.00 16
2 C 0.01 0.29 5.33 -17.43 -0.09 0.20 16
3 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16
4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
7 C -0.25 -6.72 9.64 -15.06 -0.15 -6.87 16
8 H 0.06 1.69 7.83 -52.49 -0.41 1.27 16
9 N -0.59 -14.14 2.83 -174.35 -0.49 -14.63 16
10 C 0.14 2.81 6.52 -3.77 -0.02 2.78 16
11 C -0.13 -2.09 4.78 -26.82 -0.13 -2.22 16
12 C -0.09 -1.30 3.58 -88.77 -0.32 -1.62 16
13 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16
14 C 0.09 1.19 4.24 -1.43 -0.01 1.19 16
15 N -0.61 -10.50 3.38 -176.85 -0.60 -11.09 16
16 C 0.57 10.54 7.80 -12.47 -0.10 10.44 16
17 O -0.53 -11.99 16.22 -9.98 -0.16 -12.15 16
18 C -0.15 -2.25 5.89 -104.72 -0.62 -2.86 16
19 C -0.09 -1.07 8.62 -39.27 -0.34 -1.41 16
20 C -0.16 -1.47 10.05 -39.60 -0.40 -1.87 16
21 C -0.05 -0.45 10.02 -39.64 -0.40 -0.85 16
22 C -0.19 -2.10 6.27 -104.11 -0.65 -2.76 16
23 C 0.17 2.44 6.73 -38.44 -0.26 2.18 16
24 O -0.28 -4.23 10.15 -34.53 -0.35 -4.58 16
25 C 0.04 0.41 8.01 38.06 0.30 0.72 16
26 C -0.11 -0.84 7.12 -26.50 -0.19 -1.03 16
27 C 0.12 2.43 5.81 -2.86 -0.02 2.41 16
28 C -0.11 -2.04 2.82 -91.10 -0.26 -2.29 16
29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
30 C 0.17 3.93 4.62 -5.38 -0.02 3.91 16
31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16
32 H 0.05 1.08 7.96 -51.93 -0.41 0.67 16
33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
34 H 0.06 1.09 7.11 -51.93 -0.37 0.72 16
35 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16
36 H 0.08 0.88 6.33 -51.93 -0.33 0.55 16
37 H 0.07 0.78 6.81 -51.93 -0.35 0.42 16
38 H 0.17 1.72 2.65 -61.69 -0.16 1.55 16
39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16
40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16
41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
42 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16
43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
45 H 0.07 1.45 8.12 -51.93 -0.42 1.03 16
46 H 0.08 1.83 7.46 -51.93 -0.39 1.44 16
47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
48 H 0.10 2.70 5.96 -51.93 -0.31 2.39 16
LS Contribution 369.90 15.07 5.57 5.57
Total: -1.00 -33.48 369.90 -11.06 -44.54
By element:
Atomic # 1 Polarization: 7.58 SS G_CDS: -6.94 Total: 0.64 kcal
Atomic # 6 Polarization: 3.71 SS G_CDS: -3.66 Total: 0.05 kcal
Atomic # 7 Polarization: -50.22 SS G_CDS: -0.50 Total: -50.72 kcal
Atomic # 8 Polarization: -16.22 SS G_CDS: -0.51 Total: -16.73 kcal
Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -33.48 -11.06 -44.54 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088116020.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.677 kcal
(2) G-P(sol) polarization free energy of solvation -33.476 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.141 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds