Wall clock time and date at job start Sat Apr 11 2020 06:36:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86800 * 120.00250 * 2 1
4 4 H 1.48495 * 109.46934 * 270.26927 * 3 2 1
5 5 H 1.48501 * 109.46920 * 30.26974 * 3 2 1
6 6 H 1.48504 * 109.47086 * 150.27007 * 3 2 1
7 7 C 1.38809 * 119.99797 * 180.26662 * 2 1 3
8 8 H 1.08000 * 120.00256 * 176.05053 * 7 2 1
9 9 N 1.36936 * 119.99973 * 356.05023 * 7 2 1
10 10 C 1.47239 * 121.39442 * 215.28730 * 9 7 2
11 11 C 1.52747 * 107.70612 * 238.33923 * 10 9 7
12 12 C 1.53087 * 110.93484 * 302.04188 * 11 10 9
13 13 H 1.08998 * 112.14591 * 287.60041 * 12 11 10
14 14 C 1.55402 * 106.23132 * 164.37502 * 12 11 10
15 15 N 1.48919 * 106.07141 * 268.59270 * 14 12 11
16 16 C 1.34773 * 125.45623 * 178.83606 * 15 14 12
17 17 O 1.21589 * 120.00142 * 185.52908 * 16 15 14
18 18 C 1.47537 * 120.00056 * 5.51980 * 16 15 14
19 19 C 1.39527 * 120.04950 * 352.78170 * 18 16 15
20 20 C 1.37784 * 120.18358 * 179.83743 * 19 18 16
21 21 C 1.38649 * 119.97717 * 0.34994 * 20 19 18
22 22 C 1.37661 * 120.31439 * 359.72573 * 21 20 19
23 23 C 1.38878 * 120.88185 * 0.27647 * 22 21 20
24 24 O 1.35849 * 111.31855 * 179.30298 * 23 22 21
25 25 C 1.43763 * 109.29621 * 18.84452 * 24 23 22
26 26 C 1.51681 * 132.13076 * 180.52384 * 22 21 20
27 27 C 1.47851 * 108.89522 * 358.81437 * 15 14 12
28 28 C 1.53852 * 103.99080 * 336.67030 * 27 15 14
29 29 H 1.09001 * 109.15556 * 283.00935 * 28 27 15
30 30 C 1.46711 * 121.39306 * 35.00873 * 9 7 2
31 31 H 0.97009 * 119.99514 * 359.73079 * 1 2 3
32 32 H 1.08997 * 109.80842 * 357.89082 * 10 9 7
33 33 H 1.09001 * 109.80925 * 118.72476 * 10 9 7
34 34 H 1.09001 * 109.18430 * 62.42127 * 11 10 9
35 35 H 1.09007 * 109.18425 * 181.66946 * 11 10 9
36 36 H 1.09003 * 109.97055 * 28.13972 * 14 12 11
37 37 H 1.09006 * 109.96940 * 149.40140 * 14 12 11
38 38 H 1.08001 * 119.90860 * 0.06106 * 19 18 16
39 39 H 1.07997 * 120.01434 * 180.08186 * 20 19 18
40 40 H 1.07997 * 119.84272 * 179.69472 * 21 20 19
41 41 H 1.09000 * 110.75348 * 90.66861 * 25 24 23
42 42 H 1.09000 * 110.75745 * 213.84744 * 25 24 23
43 43 H 1.08996 * 110.94575 * 46.13090 * 26 22 21
44 44 H 1.09002 * 110.97620 * 282.44317 * 26 22 21
45 45 H 1.08999 * 110.52798 * 218.04090 * 27 15 14
46 46 H 1.09005 * 110.64410 * 95.35101 * 27 15 14
47 47 H 1.09003 * 109.11737 * 248.30621 * 30 9 7
48 48 H 1.08997 * 109.11928 * 7.38994 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4920 2.0496 -1.4000
5 1 1.4505 2.6510 0.7058
6 1 3.5506 1.4384 0.6943
7 6 2.0101 -1.2021 -0.0056
8 1 3.0882 -1.2030 -0.0700
9 7 1.3279 -2.3870 0.0706
10 6 1.8764 -3.5424 0.8000
11 6 1.9886 -4.7036 -0.1861
12 6 0.6262 -5.0309 -0.8030
13 1 -0.0407 -5.5176 -0.0914
14 6 0.9143 -5.9159 -2.0475
15 7 1.0431 -4.9795 -3.1983
16 6 1.3169 -5.3355 -4.4690
17 8 1.4993 -4.4806 -5.3141
18 6 1.3956 -6.7627 -4.8346
19 6 1.3370 -7.7423 -3.8427
20 6 1.4069 -9.0761 -4.1814
21 6 1.5431 -9.4472 -5.5103
22 6 1.6035 -8.4888 -6.4967
23 6 1.5354 -7.1377 -6.1829
24 8 1.6283 -6.3665 -7.2974
25 6 1.3269 -7.1651 -8.4542
26 6 1.7371 -8.5874 -8.0044
27 6 0.8211 -3.5985 -2.7191
28 6 -0.0088 -3.7788 -1.4363
29 1 -1.0416 -3.9993 -1.7064
30 6 0.0170 -2.5563 -0.5661
31 1 -0.4850 0.8402 0.0039
32 1 2.8622 -3.2961 1.1944
33 1 1.2087 -3.8140 1.6176
34 1 2.6856 -4.4337 -0.9795
35 1 2.3654 -5.5826 0.3370
36 1 1.8400 -6.4727 -1.9021
37 1 0.0867 -6.6057 -2.2134
38 1 1.2329 -7.4544 -2.8070
39 1 1.3599 -9.8320 -3.4116
40 1 1.6027 -10.4931 -5.7728
41 1 0.2622 -7.1250 -8.6844
42 1 1.9182 -6.8426 -9.3111
43 1 1.0551 -9.3358 -8.4079
44 1 2.7658 -8.8054 -8.2915
45 1 0.2631 -3.0228 -3.4575
46 1 1.7706 -3.1123 -2.4948
47 1 -0.7448 -2.6584 0.2069
48 1 -0.2035 -1.6754 -1.1690
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001088116020.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:47
Heat of formation + Delta-G solvation = -2.418290 kcal
Electronic energy + Delta-G solvation = -30569.861545 eV
Core-core repulsion = 26590.958768 eV
Total energy + Delta-G solvation = -3978.902777 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-42.33604 -41.35609 -39.52721 -38.28953 -36.88480 -34.42543 -33.82068 -32.48328
-32.17830 -31.16088 -30.32898 -28.87186 -27.44359 -25.92231 -24.48992 -23.70283
-23.33550 -23.05669 -22.42540 -20.74801 -19.98890 -18.79404 -18.41650 -17.69334
-17.63244 -17.29991 -17.03946 -16.52462 -16.43655 -15.98613 -15.79098 -15.26907
-15.15948 -14.76990 -14.66599 -14.41007 -14.21858 -13.97866 -13.83428 -13.75188
-13.57058 -13.40755 -13.20102 -12.86468 -12.81933 -12.74158 -12.64449 -12.51628
-12.34251 -12.15735 -11.98726 -11.88665 -11.81259 -11.46411 -11.05859 -10.98732
-10.81899 -10.52058 -9.99258 -9.71596 -9.14840 -8.50668 -7.86326 -5.40447
-0.16393 0.30768 1.43654 1.45089 1.53301 1.80900 1.88790 2.29908
2.48796 2.76904 3.27919 3.36996 3.42591 3.55229 3.65687 3.73496
3.81270 3.94520 3.98194 4.11254 4.23996 4.27788 4.32251 4.38654
4.44847 4.48960 4.54841 4.55978 4.70730 4.72806 4.79912 4.84667
4.88712 4.95515 5.01205 5.08901 5.12908 5.17116 5.21103 5.28194
5.33627 5.35627 5.41375 5.41708 5.62797 5.67265 5.68295 5.84561
6.14659 6.45810 6.48946 7.09267 7.19555 7.88555 8.43573 9.17144
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.018821 B = 0.002866 C = 0.002607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1487.375364 B = 9765.829590 C =10736.067762
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C -0.042 4.042
3 Si 0.960 3.040
4 H -0.292 1.292
5 H -0.290 1.290
6 H -0.268 1.268
7 C -0.257 4.257
8 H 0.058 0.942
9 N -0.609 5.609
10 C 0.137 3.863
11 C -0.120 4.120
12 C -0.079 4.079
13 H 0.126 0.874
14 C 0.093 3.907
15 N -0.613 5.613
16 C 0.556 3.444
17 O -0.592 6.592
18 C -0.182 4.182
19 C -0.093 4.093
20 C -0.147 4.147
21 C -0.040 4.040
22 C -0.194 4.194
23 C 0.129 3.871
24 O -0.324 6.324
25 C 0.032 3.968
26 C -0.097 4.097
27 C 0.133 3.867
28 C -0.105 4.105
29 H 0.077 0.923
30 C 0.185 3.815
31 H 0.249 0.751
32 H 0.049 0.951
33 H 0.031 0.969
34 H 0.036 0.964
35 H 0.096 0.904
36 H 0.105 0.895
37 H 0.108 0.892
38 H 0.186 0.814
39 H 0.175 0.825
40 H 0.167 0.833
41 H 0.083 0.917
42 H 0.124 0.876
43 H 0.123 0.877
44 H 0.104 0.896
45 H 0.040 0.960
46 H 0.046 0.954
47 H 0.004 0.996
48 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.601 -27.678 -9.285 29.201
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.238 4.238
3 Si 0.788 3.212
4 H -0.219 1.219
5 H -0.216 1.216
6 H -0.193 1.193
7 C -0.388 4.388
8 H 0.076 0.924
9 N -0.333 5.333
10 C 0.012 3.988
11 C -0.159 4.159
12 C -0.098 4.098
13 H 0.144 0.856
14 C -0.027 4.027
15 N -0.345 5.345
16 C 0.348 3.652
17 O -0.474 6.474
18 C -0.185 4.185
19 C -0.110 4.110
20 C -0.164 4.164
21 C -0.057 4.057
22 C -0.194 4.194
23 C 0.082 3.918
24 O -0.237 6.237
25 C -0.042 4.042
26 C -0.134 4.134
27 C 0.011 3.989
28 C -0.126 4.126
29 H 0.095 0.905
30 C 0.058 3.942
31 H 0.059 0.941
32 H 0.068 0.932
33 H 0.049 0.951
34 H 0.055 0.945
35 H 0.115 0.885
36 H 0.123 0.877
37 H 0.126 0.874
38 H 0.203 0.797
39 H 0.193 0.807
40 H 0.185 0.815
41 H 0.102 0.898
42 H 0.142 0.858
43 H 0.141 0.859
44 H 0.122 0.878
45 H 0.059 0.941
46 H 0.064 0.936
47 H 0.022 0.978
48 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 0.683 -26.850 -9.835 28.603
hybrid contribution 0.296 2.144 -0.414 2.203
sum 0.979 -24.706 -10.249 26.766
Atomic orbital electron populations
1.70053 1.06391 1.25565 1.55574 1.25967 0.96318 1.01129 1.00403
0.85392 0.78383 0.80183 0.77240 1.21922 1.21583 1.19324 1.19316
0.90700 0.84414 1.44335 0.92431 1.44171 1.19923 1.10069 1.59144
1.21094 0.97060 0.87470 0.93189 1.21960 0.95985 0.99131 0.98840
1.22272 0.97593 0.93899 0.95999 0.85623 1.23515 1.03117 0.92111
0.83938 1.49027 1.69122 1.09036 1.07362 1.18540 0.76428 0.89423
0.80844 1.90768 1.52686 1.53731 1.50210 1.19297 1.14924 0.92381
0.91931 1.22858 0.94365 0.92718 1.01044 1.21524 1.02253 0.95619
0.97033 1.21027 0.93246 1.00140 0.91334 1.21217 1.08326 0.91807
0.98095 1.19945 0.93437 0.90852 0.87606 1.86968 1.83813 1.38247
1.14676 1.24271 1.02704 0.89767 0.87504 1.21855 1.04948 0.97452
0.89105 1.21822 0.99066 0.82865 0.95176 1.21860 0.98503 0.97924
0.94308 0.90492 1.19794 0.86430 0.94498 0.93433 0.94111 0.93203
0.95058 0.94522 0.88548 0.87720 0.87399 0.79745 0.80743 0.81530
0.89838 0.85783 0.85903 0.87776 0.94120 0.93594 0.97774 0.92271
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.32 10.67 21.65 0.23 -55.09 16
2 C -0.04 -2.42 5.33 84.86 0.45 -1.97 16
3 Si 0.96 46.34 29.55 68.60 2.03 48.36 16
4 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16
5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16
6 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16
7 C -0.26 -14.36 9.64 84.03 0.81 -13.55 16
8 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16
9 N -0.61 -30.12 2.83 -705.52 -2.00 -32.12 16
10 C 0.14 5.29 6.52 86.15 0.56 5.85 16
11 C -0.12 -3.55 4.78 30.54 0.15 -3.41 16
12 C -0.08 -2.11 3.58 -9.60 -0.03 -2.15 16
13 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16
14 C 0.09 2.13 4.24 86.74 0.37 2.49 16
15 N -0.61 -21.25 3.38 -831.70 -2.81 -24.06 16
16 C 0.56 21.68 7.80 86.70 0.68 22.35 16
17 O -0.59 -29.21 16.22 10.60 0.17 -29.04 16
18 C -0.18 -5.45 5.89 -19.93 -0.12 -5.57 16
19 C -0.09 -1.80 8.62 22.47 0.19 -1.61 16
20 C -0.15 -1.87 10.05 22.26 0.22 -1.65 16
21 C -0.04 -0.51 10.02 22.23 0.22 -0.29 16
22 C -0.19 -3.69 6.27 -19.53 -0.12 -3.81 16
23 C 0.13 3.77 6.73 23.01 0.15 3.93 16
24 O -0.32 -10.45 10.15 -77.26 -0.78 -11.24 16
25 C 0.03 0.58 8.01 72.57 0.58 1.16 16
26 C -0.10 -1.24 7.12 30.75 0.22 -1.03 16
27 C 0.13 5.56 5.81 86.41 0.50 6.06 16
28 C -0.11 -3.88 2.82 -11.10 -0.03 -3.91 16
29 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16
30 C 0.18 8.79 4.62 85.40 0.39 9.18 16
31 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16
32 H 0.05 1.94 7.96 -2.39 -0.02 1.92 16
33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16
34 H 0.04 1.27 7.11 -2.39 -0.02 1.25 16
35 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16
36 H 0.11 1.90 6.33 -2.39 -0.02 1.88 16
37 H 0.11 1.79 6.81 -2.38 -0.02 1.77 16
38 H 0.19 2.80 2.65 -11.55 -0.03 2.77 16
39 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16
40 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16
41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
42 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16
43 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16
44 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
45 H 0.04 1.87 8.12 -2.39 -0.02 1.86 16
46 H 0.05 2.22 7.46 -2.38 -0.02 2.20 16
47 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16
48 H 0.06 3.33 5.96 -2.39 -0.01 3.32 16
Total: -1.00 -83.60 369.90 3.00 -80.61
By element:
Atomic # 1 Polarization: 9.52 SS G_CDS: 0.96 Total: 10.47 kcal
Atomic # 6 Polarization: 6.89 SS G_CDS: 5.20 Total: 12.09 kcal
Atomic # 7 Polarization: -106.68 SS G_CDS: -4.58 Total: -111.26 kcal
Atomic # 8 Polarization: -39.67 SS G_CDS: -0.61 Total: -40.28 kcal
Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal
Total: -83.60 3.00 -80.61 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088116020.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.188 kcal
(2) G-P(sol) polarization free energy of solvation -83.602 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.414 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.418 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds