Wall clock time and date at job start Sat Apr 11 2020 06:37:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86794 * 120.00335 * 2 1
4 4 H 1.48506 * 109.47138 * 239.99770 * 3 2 1
5 5 H 1.48497 * 109.47408 * 359.97438 * 3 2 1
6 6 H 1.48504 * 109.47174 * 120.00368 * 3 2 1
7 7 C 1.37878 * 119.99163 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99703 * 175.13902 * 7 2 1
9 9 C 1.50694 * 120.00569 * 355.42361 * 7 2 1
10 10 C 1.53005 * 115.55017 * 274.92361 * 9 7 2
11 11 N 1.46497 * 109.46780 * 294.81935 * 10 9 7
12 12 C 1.34782 * 119.99894 * 184.77988 * 11 10 9
13 13 O 1.21347 * 120.00121 * 5.03010 * 12 11 10
14 14 C 1.49453 * 120.00141 * 185.03768 * 12 11 10
15 15 O 1.21345 * 119.99840 * 5.08430 * 14 12 11
16 16 N 1.34768 * 120.00060 * 185.08842 * 14 12 11
17 17 C 1.46505 * 120.00082 * 179.97438 * 16 14 12
18 18 C 1.52998 * 109.47233 * 179.97438 * 17 16 14
19 19 C 1.54348 * 110.82463 * 287.97043 * 18 17 16
20 20 C 1.51359 * 105.17137 * 215.42446 * 19 18 17
21 21 C 1.38503 * 130.39354 * 197.18973 * 20 19 18
22 22 C 1.38098 * 120.21891 * 180.02562 * 21 20 19
23 23 C 1.38258 * 119.93136 * 359.97438 * 22 21 20
24 24 C 1.38097 * 119.94063 * 0.02562 * 23 22 21
25 25 C 1.38221 * 109.75966 * 17.19093 * 20 19 18
26 26 C 1.51362 * 109.75948 * 359.97438 * 25 20 19
27 27 C 1.53002 * 117.50254 * 129.25219 * 9 7 2
28 28 C 1.53002 * 117.50119 * 60.59111 * 9 7 2
29 29 H 0.97009 * 119.99393 * 4.99881 * 1 2 3
30 30 H 1.09003 * 109.46813 * 54.80918 * 10 9 7
31 31 H 1.08993 * 109.47289 * 174.81299 * 10 9 7
32 32 H 0.97004 * 120.00703 * 4.77491 * 11 10 9
33 33 H 0.97003 * 119.99911 * 359.97438 * 16 14 12
34 34 H 1.08996 * 109.46741 * 299.99780 * 17 16 14
35 35 H 1.08999 * 109.46713 * 59.99706 * 17 16 14
36 36 H 1.09003 * 110.72855 * 51.59102 * 18 17 16
37 37 H 1.08998 * 110.30336 * 334.34979 * 19 18 17
38 38 H 1.09003 * 110.30014 * 96.49976 * 19 18 17
39 39 H 1.08002 * 119.88811 * 0.02562 * 21 20 19
40 40 H 1.08005 * 120.03632 * 180.02562 * 22 21 20
41 41 H 1.08006 * 120.03111 * 179.97438 * 23 22 21
42 42 H 1.07990 * 119.89446 * 180.02562 * 24 23 22
43 43 H 1.09000 * 110.30564 * 223.89288 * 26 25 20
44 44 H 1.08998 * 110.38780 * 101.77664 * 26 25 20
45 45 H 1.08995 * 117.49715 * 359.97438 * 27 9 7
46 46 H 1.09003 * 117.49834 * 145.01894 * 27 9 7
47 47 H 1.09005 * 117.49794 * 214.98555 * 28 9 7
48 48 H 1.08999 * 117.49412 * 359.97438 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1030 1.6962 -1.2125
5 1 1.2843 2.7464 -0.0006
6 1 3.1030 1.6962 1.2125
7 6 2.0043 -1.1942 0.0005
8 1 3.0815 -1.1960 -0.0787
9 6 1.2544 -2.4970 0.1052
10 6 0.9186 -2.9528 1.5267
11 7 2.1578 -3.2464 2.2508
12 6 2.1052 -3.7588 3.4964
13 8 1.0358 -4.0622 3.9830
14 6 3.3640 -3.9532 4.2782
15 8 4.4228 -3.5653 3.8298
16 7 3.3233 -4.5594 5.4812
17 6 4.5573 -4.7504 6.2473
18 6 4.2350 -5.4569 7.5656
19 6 3.5006 -4.5047 8.5332
20 6 4.0031 -4.8760 9.9118
21 6 3.4823 -4.5922 11.1635
22 6 4.1232 -5.0418 12.3012
23 6 5.2882 -5.7782 12.1913
24 6 5.8090 -6.0622 10.9443
25 6 5.1678 -5.6122 9.8021
26 6 5.5274 -5.7864 8.3422
27 6 1.5726 -3.5804 -0.9273
28 6 0.2449 -2.8218 -0.9977
29 1 -0.4850 0.8370 -0.0732
30 1 0.3750 -2.1616 2.0430
31 1 0.3012 -3.8500 1.4843
32 1 3.0162 -3.0722 1.8340
33 1 2.4769 -4.8691 5.8398
34 1 5.2532 -5.3586 5.6695
35 1 5.0091 -3.7807 6.4562
36 1 3.6501 -6.3592 7.3868
37 1 3.7504 -3.4683 8.3061
38 1 2.4233 -4.6576 8.4694
39 1 2.5721 -4.0173 11.2500
40 1 3.7143 -4.8191 13.2757
41 1 5.7909 -6.1302 13.0801
42 1 6.7188 -6.6378 10.8594
43 1 5.8340 -6.8143 8.1482
44 1 6.3227 -5.0958 8.0620
45 1 2.3241 -3.3505 -1.6826
46 1 1.5424 -4.6178 -0.5940
47 1 -0.6582 -3.3604 -0.7106
48 1 0.1230 -2.0928 -1.7988
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001323167435.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:23
Heat of formation + Delta-G solvation = -31.703529 kcal
Electronic energy + Delta-G solvation = -28263.843366 eV
Core-core repulsion = 24283.670686 eV
Total energy + Delta-G solvation = -3980.172680 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.68363 -40.10596 -38.27958 -36.83777 -36.72467 -34.46371 -33.26235 -31.97601
-31.75477 -30.20596 -27.66865 -27.30343 -26.10126 -25.29826 -23.04223 -22.10881
-21.30111 -21.14545 -20.85430 -19.83343 -19.46886 -18.03258 -16.87257 -16.57837
-16.26033 -16.13657 -15.65876 -15.39818 -15.22029 -14.81979 -14.72723 -14.40873
-14.13856 -13.84346 -13.53710 -13.42429 -13.31972 -13.21056 -13.04539 -12.70739
-12.49472 -11.97372 -11.87579 -11.63222 -11.54848 -11.38443 -11.29759 -11.25406
-11.10554 -10.98944 -10.95260 -10.54813 -10.25726 -9.63490 -9.26419 -9.25034
-9.13546 -9.09281 -8.83175 -8.53552 -8.40135 -8.19079 -6.09208 -4.18889
1.02379 1.06350 1.77075 2.64421 3.28366 3.33416 3.36690 3.42499
3.58421 3.88960 4.08615 4.13561 4.35557 4.42911 4.63910 4.68192
4.72030 4.86828 4.92133 4.99989 5.17947 5.18268 5.26496 5.30970
5.33448 5.35045 5.41441 5.52130 5.54845 5.77242 5.78632 5.88177
5.95162 6.11484 6.18657 6.20794 6.27757 6.32634 6.39184 6.46808
6.65902 6.67589 6.74178 6.97915 7.07761 7.20036 7.32170 7.49269
7.80423 7.83788 8.13388 8.30924 8.50863 8.83054 9.48701 10.97793
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.018465 B = 0.001905 C = 0.001845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1516.042801 B =14695.166941 C =15174.616119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.876 5.876
2 C 0.073 3.927
3 Si 0.891 3.109
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.275 1.275
7 C -0.500 4.500
8 H 0.061 0.939
9 C 0.020 3.980
10 C 0.159 3.841
11 N -0.666 5.666
12 C 0.495 3.505
13 O -0.541 6.541
14 C 0.508 3.492
15 O -0.518 6.518
16 N -0.707 5.707
17 C 0.127 3.873
18 C -0.101 4.101
19 C -0.083 4.083
20 C -0.093 4.093
21 C -0.107 4.107
22 C -0.121 4.121
23 C -0.123 4.123
24 C -0.108 4.108
25 C -0.097 4.097
26 C -0.073 4.073
27 C -0.210 4.210
28 C -0.139 4.139
29 H 0.262 0.738
30 H 0.074 0.926
31 H 0.048 0.952
32 H 0.414 0.586
33 H 0.412 0.588
34 H 0.076 0.924
35 H 0.075 0.925
36 H 0.092 0.908
37 H 0.086 0.914
38 H 0.080 0.920
39 H 0.120 0.880
40 H 0.123 0.877
41 H 0.122 0.878
42 H 0.119 0.881
43 H 0.080 0.920
44 H 0.087 0.913
45 H 0.079 0.921
46 H 0.065 0.935
47 H 0.064 0.936
48 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.845 -12.628 20.747 25.848
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.512 5.512
2 C -0.131 4.131
3 Si 0.719 3.281
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.200 1.200
7 C -0.538 4.538
8 H 0.080 0.920
9 C 0.019 3.981
10 C 0.037 3.963
11 N -0.316 5.316
12 C 0.274 3.726
13 O -0.421 6.421
14 C 0.289 3.711
15 O -0.393 6.393
16 N -0.362 5.362
17 C 0.004 3.996
18 C -0.119 4.119
19 C -0.120 4.120
20 C -0.093 4.093
21 C -0.125 4.125
22 C -0.139 4.139
23 C -0.141 4.141
24 C -0.126 4.126
25 C -0.097 4.097
26 C -0.111 4.111
27 C -0.247 4.247
28 C -0.177 4.177
29 H 0.072 0.928
30 H 0.092 0.908
31 H 0.066 0.934
32 H 0.250 0.750
33 H 0.248 0.752
34 H 0.094 0.906
35 H 0.093 0.907
36 H 0.111 0.889
37 H 0.105 0.895
38 H 0.098 0.902
39 H 0.138 0.862
40 H 0.141 0.859
41 H 0.140 0.860
42 H 0.137 0.863
43 H 0.098 0.902
44 H 0.105 0.895
45 H 0.098 0.902
46 H 0.084 0.916
47 H 0.083 0.917
48 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 8.677 -12.386 20.791 25.710
hybrid contribution 0.371 0.950 0.089 1.023
sum 9.047 -11.437 20.881 25.468
Atomic orbital electron populations
1.69982 1.05862 1.27035 1.48288 1.24992 0.94860 0.99034 0.94237
0.86671 0.79656 0.82979 0.78808 1.20206 1.21284 1.20036 1.20337
0.92751 0.88466 1.52244 0.92049 1.19041 0.99775 0.93600 0.85676
1.21213 0.83392 0.98390 0.93315 1.45898 1.12693 1.59305 1.13660
1.19928 0.88733 0.80398 0.83511 1.90710 1.30295 1.51200 1.69853
1.20490 0.89922 0.78482 0.82196 1.90761 1.31279 1.48019 1.69216
1.45718 1.11691 1.59868 1.18908 1.21461 0.86625 1.00955 0.90582
1.22116 0.97213 0.99099 0.93512 1.21206 1.00741 1.00046 0.89962
1.20606 0.96032 0.97985 0.94688 1.20676 1.00194 1.00388 0.91289
1.21055 0.95939 0.98645 0.98257 1.21041 0.96576 0.99279 0.97167
1.20625 0.99972 1.00485 0.91478 1.20560 0.95785 0.98353 0.94976
1.20994 0.97423 1.02743 0.89928 1.23034 1.00744 0.95518 1.05403
1.22475 0.90761 1.01261 1.03232 0.92797 0.90794 0.93388 0.74998
0.75178 0.90582 0.90677 0.88947 0.89532 0.90161 0.86156 0.85938
0.85969 0.86252 0.90158 0.89519 0.90208 0.91639 0.91728 0.89383
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -24.00 12.65 55.43 0.70 -23.30 16
2 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16
3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16
4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
7 C -0.50 -12.92 8.59 -34.44 -0.30 -13.21 16
8 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16
9 C 0.02 0.46 1.47 -155.66 -0.23 0.23 16
10 C 0.16 3.52 5.53 -4.04 -0.02 3.49 16
11 N -0.67 -13.22 5.46 -60.73 -0.33 -13.56 16
12 C 0.49 9.13 7.88 -11.58 -0.09 9.04 16
13 O -0.54 -10.76 16.47 5.50 0.09 -10.67 16
14 C 0.51 8.08 7.89 -11.59 -0.09 7.99 16
15 O -0.52 -9.35 16.50 5.50 0.09 -9.26 16
16 N -0.71 -8.35 5.47 -60.73 -0.33 -8.69 16
17 C 0.13 1.18 4.97 -4.04 -0.02 1.16 16
18 C -0.10 -0.74 3.09 -89.22 -0.28 -1.01 16
19 C -0.08 -0.66 6.25 -26.85 -0.17 -0.83 16
20 C -0.09 -0.82 6.14 -104.21 -0.64 -1.46 16
21 C -0.11 -0.90 10.04 -39.53 -0.40 -1.29 16
22 C -0.12 -0.91 10.05 -39.63 -0.40 -1.31 16
23 C -0.12 -0.89 10.05 -39.63 -0.40 -1.29 16
24 C -0.11 -0.83 10.04 -39.53 -0.40 -1.22 16
25 C -0.10 -0.81 6.14 -104.20 -0.64 -1.45 16
26 C -0.07 -0.50 6.32 -26.86 -0.17 -0.67 16
27 C -0.21 -4.35 9.96 -26.69 -0.27 -4.61 16
28 C -0.14 -3.13 9.14 -26.69 -0.24 -3.38 16
29 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16
30 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16
31 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16
32 H 0.41 8.14 7.84 -40.82 -0.32 7.82 16
33 H 0.41 4.40 7.96 -40.82 -0.32 4.08 16
34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
35 H 0.07 0.74 7.93 -51.93 -0.41 0.33 16
36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.09 0.73 7.75 -51.93 -0.40 0.33 16
38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16
39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16
40 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16
41 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16
42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16
43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.09 0.56 7.89 -51.93 -0.41 0.15 16
45 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16
46 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16
47 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16
48 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16
LS Contribution 405.44 15.07 6.11 6.11
Total: -1.00 -30.01 405.44 -10.86 -40.87
By element:
Atomic # 1 Polarization: 18.07 SS G_CDS: -7.33 Total: 10.74 kcal
Atomic # 6 Polarization: -3.15 SS G_CDS: -4.84 Total: -7.99 kcal
Atomic # 7 Polarization: -45.58 SS G_CDS: 0.04 Total: -45.54 kcal
Atomic # 8 Polarization: -20.11 SS G_CDS: 0.18 Total: -19.93 kcal
Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -30.01 -10.86 -40.87 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001323167435.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.168 kcal
(2) G-P(sol) polarization free energy of solvation -30.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.842 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.704 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds