Wall clock time and date at job start Sat Apr 11 2020 06:37:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86794 * 120.00335 * 2 1
4 4 H 1.48506 * 109.47138 * 239.99770 * 3 2 1
5 5 H 1.48497 * 109.47408 * 359.97438 * 3 2 1
6 6 H 1.48504 * 109.47174 * 120.00368 * 3 2 1
7 7 C 1.37878 * 119.99163 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99703 * 175.13902 * 7 2 1
9 9 C 1.50694 * 120.00569 * 355.42361 * 7 2 1
10 10 C 1.53005 * 115.55017 * 274.92361 * 9 7 2
11 11 N 1.46497 * 109.46780 * 294.81935 * 10 9 7
12 12 C 1.34782 * 119.99894 * 184.77988 * 11 10 9
13 13 O 1.21347 * 120.00121 * 5.03010 * 12 11 10
14 14 C 1.49453 * 120.00141 * 185.03768 * 12 11 10
15 15 O 1.21345 * 119.99840 * 5.08430 * 14 12 11
16 16 N 1.34768 * 120.00060 * 185.08842 * 14 12 11
17 17 C 1.46505 * 120.00082 * 179.97438 * 16 14 12
18 18 C 1.52998 * 109.47233 * 179.97438 * 17 16 14
19 19 C 1.54348 * 110.82463 * 287.97043 * 18 17 16
20 20 C 1.51359 * 105.17137 * 215.42446 * 19 18 17
21 21 C 1.38503 * 130.39354 * 197.18973 * 20 19 18
22 22 C 1.38098 * 120.21891 * 180.02562 * 21 20 19
23 23 C 1.38258 * 119.93136 * 359.97438 * 22 21 20
24 24 C 1.38097 * 119.94063 * 0.02562 * 23 22 21
25 25 C 1.38221 * 109.75966 * 17.19093 * 20 19 18
26 26 C 1.51362 * 109.75948 * 359.97438 * 25 20 19
27 27 C 1.53002 * 117.50254 * 129.25219 * 9 7 2
28 28 C 1.53002 * 117.50119 * 60.59111 * 9 7 2
29 29 H 0.97009 * 119.99393 * 4.99881 * 1 2 3
30 30 H 1.09003 * 109.46813 * 54.80918 * 10 9 7
31 31 H 1.08993 * 109.47289 * 174.81299 * 10 9 7
32 32 H 0.97004 * 120.00703 * 4.77491 * 11 10 9
33 33 H 0.97003 * 119.99911 * 359.97438 * 16 14 12
34 34 H 1.08996 * 109.46741 * 299.99780 * 17 16 14
35 35 H 1.08999 * 109.46713 * 59.99706 * 17 16 14
36 36 H 1.09003 * 110.72855 * 51.59102 * 18 17 16
37 37 H 1.08998 * 110.30336 * 334.34979 * 19 18 17
38 38 H 1.09003 * 110.30014 * 96.49976 * 19 18 17
39 39 H 1.08002 * 119.88811 * 0.02562 * 21 20 19
40 40 H 1.08005 * 120.03632 * 180.02562 * 22 21 20
41 41 H 1.08006 * 120.03111 * 179.97438 * 23 22 21
42 42 H 1.07990 * 119.89446 * 180.02562 * 24 23 22
43 43 H 1.09000 * 110.30564 * 223.89288 * 26 25 20
44 44 H 1.08998 * 110.38780 * 101.77664 * 26 25 20
45 45 H 1.08995 * 117.49715 * 359.97438 * 27 9 7
46 46 H 1.09003 * 117.49834 * 145.01894 * 27 9 7
47 47 H 1.09005 * 117.49794 * 214.98555 * 28 9 7
48 48 H 1.08999 * 117.49412 * 359.97438 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1030 1.6962 -1.2125
5 1 1.2843 2.7464 -0.0006
6 1 3.1030 1.6962 1.2125
7 6 2.0043 -1.1942 0.0005
8 1 3.0815 -1.1960 -0.0787
9 6 1.2544 -2.4970 0.1052
10 6 0.9186 -2.9528 1.5267
11 7 2.1578 -3.2464 2.2508
12 6 2.1052 -3.7588 3.4964
13 8 1.0358 -4.0622 3.9830
14 6 3.3640 -3.9532 4.2782
15 8 4.4228 -3.5653 3.8298
16 7 3.3233 -4.5594 5.4812
17 6 4.5573 -4.7504 6.2473
18 6 4.2350 -5.4569 7.5656
19 6 3.5006 -4.5047 8.5332
20 6 4.0031 -4.8760 9.9118
21 6 3.4823 -4.5922 11.1635
22 6 4.1232 -5.0418 12.3012
23 6 5.2882 -5.7782 12.1913
24 6 5.8090 -6.0622 10.9443
25 6 5.1678 -5.6122 9.8021
26 6 5.5274 -5.7864 8.3422
27 6 1.5726 -3.5804 -0.9273
28 6 0.2449 -2.8218 -0.9977
29 1 -0.4850 0.8370 -0.0732
30 1 0.3750 -2.1616 2.0430
31 1 0.3012 -3.8500 1.4843
32 1 3.0162 -3.0722 1.8340
33 1 2.4769 -4.8691 5.8398
34 1 5.2532 -5.3586 5.6695
35 1 5.0091 -3.7807 6.4562
36 1 3.6501 -6.3592 7.3868
37 1 3.7504 -3.4683 8.3061
38 1 2.4233 -4.6576 8.4694
39 1 2.5721 -4.0173 11.2500
40 1 3.7143 -4.8191 13.2757
41 1 5.7909 -6.1302 13.0801
42 1 6.7188 -6.6378 10.8594
43 1 5.8340 -6.8143 8.1482
44 1 6.3227 -5.0958 8.0620
45 1 2.3241 -3.3505 -1.6826
46 1 1.5424 -4.6178 -0.5940
47 1 -0.6582 -3.3604 -0.7106
48 1 0.1230 -2.0928 -1.7988
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001323167435.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:22
Heat of formation + Delta-G solvation = -48.645872 kcal
Electronic energy + Delta-G solvation = -28264.578041 eV
Core-core repulsion = 24283.670686 eV
Total energy + Delta-G solvation = -3980.907355 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.71101 -41.03576 -39.67873 -38.45744 -37.60987 -35.57328 -34.71988 -33.95748
-32.31247 -30.96254 -28.81885 -28.22887 -27.54696 -26.79822 -24.27002 -22.92610
-22.76978 -21.89467 -21.57316 -21.40326 -20.93285 -19.45205 -18.12852 -17.83093
-17.32918 -17.11567 -16.86188 -16.65464 -16.36040 -16.20670 -15.87947 -15.70086
-15.29746 -15.16247 -14.72422 -14.42820 -14.31125 -14.06602 -13.84945 -13.77654
-13.66046 -13.49048 -13.19571 -12.95539 -12.82512 -12.79887 -12.56121 -12.39467
-12.09244 -12.01176 -11.96571 -11.87883 -11.65423 -11.42915 -10.96851 -10.74519
-10.45231 -10.30757 -10.11320 -9.95656 -9.70895 -9.40570 -8.10522 -6.23975
0.39143 0.45112 0.48778 1.38699 1.42105 1.44583 1.50332 2.18508
2.41657 2.70831 2.85802 3.16888 3.37171 3.45377 3.48980 3.61902
3.80760 4.07223 4.17237 4.18577 4.20298 4.32647 4.35643 4.51953
4.61533 4.63008 4.64772 4.69175 4.71509 4.76633 4.78089 4.90143
4.92480 4.97376 5.02573 5.12018 5.20790 5.23351 5.28874 5.33258
5.36269 5.53185 5.56172 5.63264 5.68771 5.73846 5.77273 6.00611
6.13398 6.35868 6.46943 6.78536 6.83328 7.01260 7.45446 8.95832
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.018465 B = 0.001905 C = 0.001845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1516.042801 B =14695.166941 C =15174.616119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.027 3.973
3 Si 0.946 3.054
4 H -0.270 1.270
5 H -0.287 1.287
6 H -0.276 1.276
7 C -0.507 4.507
8 H 0.058 0.942
9 C -0.006 4.006
10 C 0.175 3.825
11 N -0.670 5.670
12 C 0.495 3.505
13 O -0.556 6.556
14 C 0.514 3.486
15 O -0.541 6.541
16 N -0.686 5.686
17 C 0.127 3.873
18 C -0.090 4.090
19 C -0.083 4.083
20 C -0.113 4.113
21 C -0.124 4.124
22 C -0.130 4.130
23 C -0.129 4.129
24 C -0.118 4.118
25 C -0.109 4.109
26 C -0.070 4.070
27 C -0.180 4.180
28 C -0.145 4.145
29 H 0.260 0.740
30 H 0.040 0.960
31 H 0.056 0.944
32 H 0.415 0.585
33 H 0.419 0.581
34 H 0.084 0.916
35 H 0.072 0.928
36 H 0.102 0.898
37 H 0.078 0.922
38 H 0.081 0.919
39 H 0.126 0.874
40 H 0.140 0.860
41 H 0.143 0.857
42 H 0.136 0.864
43 H 0.095 0.905
44 H 0.090 0.910
45 H 0.082 0.918
46 H 0.090 0.910
47 H 0.075 0.925
48 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.248 -13.979 21.894 27.924
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.174 4.174
3 Si 0.772 3.228
4 H -0.196 1.196
5 H -0.213 1.213
6 H -0.202 1.202
7 C -0.544 4.544
8 H 0.076 0.924
9 C -0.006 4.006
10 C 0.052 3.948
11 N -0.320 5.320
12 C 0.276 3.724
13 O -0.436 6.436
14 C 0.294 3.706
15 O -0.419 6.419
16 N -0.340 5.340
17 C 0.005 3.995
18 C -0.108 4.108
19 C -0.120 4.120
20 C -0.113 4.113
21 C -0.142 4.142
22 C -0.148 4.148
23 C -0.146 4.146
24 C -0.136 4.136
25 C -0.109 4.109
26 C -0.107 4.107
27 C -0.217 4.217
28 C -0.184 4.184
29 H 0.069 0.931
30 H 0.058 0.942
31 H 0.074 0.926
32 H 0.251 0.749
33 H 0.257 0.743
34 H 0.103 0.897
35 H 0.090 0.910
36 H 0.121 0.879
37 H 0.097 0.903
38 H 0.100 0.900
39 H 0.144 0.856
40 H 0.158 0.842
41 H 0.161 0.839
42 H 0.154 0.846
43 H 0.113 0.887
44 H 0.109 0.891
45 H 0.101 0.899
46 H 0.109 0.891
47 H 0.094 0.906
48 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 10.088 -13.763 21.972 27.820
hybrid contribution -0.061 1.318 -0.168 1.330
sum 10.027 -12.445 21.804 27.034
Atomic orbital electron populations
1.70082 1.06922 1.27397 1.49626 1.25643 0.95550 1.01811 0.94405
0.85809 0.78499 0.79771 0.78729 1.19555 1.21310 1.20155 1.20609
0.92792 0.89740 1.51298 0.92398 1.19100 1.00768 0.94044 0.86712
1.20818 0.84100 0.97441 0.92455 1.45810 1.11896 1.59945 1.14336
1.20389 0.89637 0.79344 0.83054 1.90697 1.31277 1.51623 1.70027
1.19956 0.88341 0.79203 0.83072 1.90759 1.31439 1.49613 1.70042
1.45704 1.13144 1.57716 1.17406 1.21644 0.85421 1.01256 0.91186
1.22029 0.97729 0.98937 0.92132 1.21201 1.00950 0.99756 0.90084
1.20784 0.96713 0.98754 0.95014 1.20911 1.00770 1.00879 0.91666
1.21347 0.96117 0.98459 0.98832 1.21374 0.96490 0.98819 0.97948
1.20923 1.00604 1.00554 0.91480 1.20802 0.95801 0.98443 0.95883
1.20994 0.97014 1.03738 0.88956 1.23021 0.99148 0.95991 1.03562
1.22395 0.92064 1.01536 1.02372 0.93080 0.94203 0.92605 0.74869
0.74323 0.89745 0.91005 0.87936 0.90339 0.89998 0.85608 0.84231
0.83913 0.84580 0.88678 0.89130 0.89928 0.89132 0.90620 0.91625
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -50.31 12.65 21.45 0.27 -50.04 16
2 C 0.03 1.44 5.43 84.66 0.46 1.90 16
3 Si 0.95 42.86 29.54 68.60 2.03 44.89 16
4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16
5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16
6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
7 C -0.51 -26.23 8.59 25.60 0.22 -26.01 16
8 H 0.06 2.97 7.82 -2.91 -0.02 2.94 16
9 C -0.01 -0.26 1.47 -52.93 -0.08 -0.33 16
10 C 0.18 7.75 5.53 86.38 0.48 8.23 16
11 N -0.67 -26.42 5.46 -464.41 -2.54 -28.95 16
12 C 0.50 17.98 7.88 87.27 0.69 18.67 16
13 O -0.56 -21.80 16.47 -3.24 -0.05 -21.85 16
14 C 0.51 15.81 7.89 87.27 0.69 16.50 16
15 O -0.54 -19.00 16.50 -3.23 -0.05 -19.06 16
16 N -0.69 -15.15 5.47 -464.42 -2.54 -17.69 16
17 C 0.13 2.13 4.97 86.38 0.43 2.56 16
18 C -0.09 -1.14 3.09 -9.88 -0.03 -1.17 16
19 C -0.08 -1.25 6.25 30.52 0.19 -1.06 16
20 C -0.11 -1.88 6.14 -19.60 -0.12 -2.00 16
21 C -0.12 -1.99 10.04 22.30 0.22 -1.77 16
22 C -0.13 -1.79 10.05 22.24 0.22 -1.57 16
23 C -0.13 -1.65 10.05 22.24 0.22 -1.43 16
24 C -0.12 -1.61 10.04 22.30 0.22 -1.38 16
25 C -0.11 -1.66 6.14 -19.59 -0.12 -1.78 16
26 C -0.07 -0.81 6.32 30.51 0.19 -0.62 16
27 C -0.18 -7.18 9.96 30.62 0.30 -6.88 16
28 C -0.15 -6.52 9.14 30.62 0.28 -6.24 16
29 H 0.26 14.01 8.32 -92.70 -0.77 13.24 16
30 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16
31 H 0.06 2.35 8.05 -2.39 -0.02 2.33 16
32 H 0.41 16.18 7.84 -92.71 -0.73 15.46 16
33 H 0.42 8.26 7.96 -92.71 -0.74 7.52 16
34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
35 H 0.07 1.32 7.93 -2.39 -0.02 1.30 16
36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16
37 H 0.08 1.29 7.75 -2.39 -0.02 1.27 16
38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
39 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16
40 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16
41 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16
42 H 0.14 1.30 8.06 -2.92 -0.02 1.27 16
43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
44 H 0.09 0.99 7.89 -2.39 -0.02 0.98 16
45 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16
46 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16
47 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16
48 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16
Total: -1.00 -63.79 405.44 1.11 -62.69
By element:
Atomic # 1 Polarization: 34.88 SS G_CDS: -0.48 Total: 34.40 kcal
Atomic # 6 Polarization: -8.86 SS G_CDS: 4.48 Total: -4.38 kcal
Atomic # 7 Polarization: -91.88 SS G_CDS: -4.81 Total: -96.69 kcal
Atomic # 8 Polarization: -40.80 SS G_CDS: -0.11 Total: -40.91 kcal
Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal
Total: -63.79 1.11 -62.69 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001323167435.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.041 kcal
(2) G-P(sol) polarization free energy of solvation -63.794 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.753 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.687 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.646 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds