Wall clock time and date at job start Sat Apr 11 2020 06:38:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86798 * 119.99649 * 2 1
4 4 H 1.48500 * 109.47054 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47139 * 300.00151 * 3 2 1
6 6 H 1.48502 * 109.47424 * 59.99996 * 3 2 1
7 7 C 1.38803 * 120.00134 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00069 * 189.10111 * 7 2 1
9 9 N 1.36946 * 120.00233 * 9.10210 * 7 2 1
10 10 C 1.48140 * 127.83434 * 15.59262 * 9 7 2
11 11 C 1.54387 * 104.61612 * 140.39545 * 10 9 7
12 12 H 1.09002 * 118.18627 * 244.19788 * 11 10 9
13 13 C 1.52996 * 118.12170 * 87.19211 * 11 10 9
14 14 H 1.08997 * 117.44902 * 16.06125 * 13 11 10
15 15 C 1.53005 * 117.44577 * 160.81194 * 13 11 10
16 16 N 1.46496 * 109.47365 * 184.99937 * 15 13 11
17 17 C 1.34775 * 120.00184 * 179.97438 * 16 15 13
18 18 O 1.21289 * 119.99679 * 359.97438 * 17 16 15
19 19 C 1.50700 * 120.00248 * 179.97438 * 17 16 15
20 20 C 1.53006 * 109.47083 * 179.97438 * 19 17 16
21 21 H 1.09000 * 110.66893 * 56.76139 * 20 19 17
22 22 C 1.54708 * 110.90496 * 180.09526 * 20 19 17
23 23 C 1.51643 * 101.92975 * 143.67509 * 22 20 19
24 24 C 1.37736 * 132.17426 * 164.14259 * 23 22 20
25 25 C 1.38347 * 119.98279 * 180.91493 * 24 23 22
26 26 C 1.38290 * 119.76592 * 0.02562 * 25 24 23
27 27 C 1.37939 * 120.34928 * 359.82546 * 26 25 24
28 28 C 1.38882 * 107.03968 * 344.65977 * 23 22 20
29 29 O 1.36140 * 111.23150 * 358.85523 * 28 23 22
30 30 C 1.52993 * 60.55660 * 268.45725 * 13 11 10
31 31 H 1.09008 * 119.54522 * 248.23737 * 30 13 11
32 32 C 1.48140 * 127.83702 * 195.57026 * 9 7 2
33 33 H 0.96995 * 120.00211 * 0.02562 * 1 2 3
34 34 H 1.09000 * 110.41161 * 21.61070 * 10 9 7
35 35 H 1.09002 * 110.40955 * 259.18204 * 10 9 7
36 36 H 1.09003 * 109.47437 * 64.99190 * 15 13 11
37 37 H 1.09005 * 109.46722 * 304.99947 * 15 13 11
38 38 H 0.97003 * 120.00226 * 359.97438 * 16 15 13
39 39 H 1.08991 * 109.46930 * 59.99739 * 19 17 16
40 40 H 1.09001 * 109.46810 * 299.99379 * 19 17 16
41 41 H 1.08995 * 110.94178 * 25.50888 * 22 20 19
42 42 H 1.09004 * 110.93374 * 261.83066 * 22 20 19
43 43 H 1.08006 * 120.00915 * 0.94110 * 24 23 22
44 44 H 1.08002 * 120.12273 * 179.97438 * 25 24 23
45 45 H 1.07993 * 119.82921 * 179.56015 * 26 25 24
46 46 H 1.07997 * 119.87890 * 179.97438 * 27 26 25
47 47 H 1.08997 * 110.40949 * 100.82409 * 32 9 7
48 48 H 1.09000 * 110.40847 * 338.38785 * 32 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3465 0.0006
5 1 1.8913 2.3965 -1.2125
6 1 1.8914 2.3965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0801 -1.2079 0.1485
9 7 1.3386 -2.3807 -0.1865
10 6 -0.0339 -2.5711 -0.7106
11 6 0.0645 -3.8172 -1.6168
12 1 -0.1222 -3.6941 -2.6836
13 6 -0.1178 -5.1931 -0.9731
14 1 -0.5672 -5.2280 0.0193
15 6 -0.4664 -6.3628 -1.8958
16 7 -0.7168 -7.5614 -1.0917
17 6 -1.0440 -8.7214 -1.6949
18 8 -1.1317 -8.7727 -2.9035
19 6 -1.3010 -9.9546 -0.8677
20 6 -1.6510 -11.1238 -1.7904
21 1 -0.8571 -11.2903 -2.5185
22 6 -1.9241 -12.4090 -0.9736
23 6 -3.0424 -13.0542 -1.7690
24 6 -3.5603 -14.3305 -1.7686
25 6 -4.5919 -14.6583 -2.6302
26 6 -5.0988 -13.7010 -3.4899
27 6 -4.5837 -12.4214 -3.4898
28 6 -3.5481 -12.0822 -2.6224
29 8 -2.9073 -10.8934 -2.4504
30 6 1.2866 -4.5975 -1.0897
31 1 2.0105 -5.0555 -1.7639
32 6 1.8198 -3.7545 0.0888
33 1 -0.4850 0.8400 -0.0004
34 1 -0.3429 -1.7022 -1.2916
35 1 -0.7317 -2.7501 0.1074
36 1 0.3644 -6.5488 -2.5765
37 1 -1.3594 -6.1181 -2.4710
38 1 -0.6470 -7.5203 -0.1250
39 1 -2.1312 -9.7686 -0.1865
40 1 -0.4075 -10.1994 -0.2933
41 1 -2.2543 -12.1660 0.0363
42 1 -1.0428 -13.0501 -0.9500
43 1 -3.1615 -15.0751 -1.0955
44 1 -4.9994 -15.6585 -2.6321
45 1 -5.8992 -13.9577 -4.1679
46 1 -4.9850 -11.6798 -4.1647
47 1 1.4115 -4.1184 1.0316
48 1 2.9093 -3.7783 0.1110
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001570924095.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:38:26
Heat of formation + Delta-G solvation = -4.130227 kcal
Electronic energy + Delta-G solvation = -27993.153832 eV
Core-core repulsion = 24014.176820 eV
Total energy + Delta-G solvation = -3978.977012 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.16916 -40.84894 -40.12400 -38.32316 -36.32933 -34.97699 -34.17518 -32.82195
-32.21298 -30.92085 -29.28669 -28.86696 -27.86884 -26.31466 -23.60088 -23.09315
-22.66103 -22.56470 -21.85732 -20.96588 -20.80888 -18.85479 -18.55211 -18.21860
-17.68989 -17.24526 -16.84197 -16.56532 -16.37552 -16.02841 -15.80353 -15.32079
-15.09371 -14.90561 -14.61811 -14.50739 -14.38916 -14.17749 -14.01520 -13.80268
-13.38596 -13.33783 -13.19031 -12.97394 -12.81128 -12.72550 -12.64435 -12.48916
-12.28900 -11.98584 -11.91911 -11.80314 -11.77606 -11.65142 -11.09810 -10.88392
-10.70163 -10.53559 -10.02764 -9.82485 -9.07471 -8.91406 -7.92831 -5.29081
0.35835 0.43421 1.45683 1.46661 1.57449 1.67394 2.10073 2.33105
2.46753 2.72792 2.79623 3.25527 3.40561 3.50689 3.63498 3.70445
3.81838 3.84539 3.91465 4.03154 4.15296 4.22239 4.25376 4.27424
4.38766 4.42863 4.51697 4.56045 4.58671 4.63982 4.65526 4.70349
4.75481 4.90920 4.93841 4.96432 5.02312 5.15392 5.21468 5.34165
5.41362 5.44504 5.48515 5.48948 5.52356 5.57101 5.65530 5.76900
6.17319 6.29657 6.58917 7.00310 7.29116 7.67720 8.45810 9.21165
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.041543 B = 0.001502 C = 0.001477
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 673.843043 B =18631.244437 C =18951.211591
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.948 5.948
2 C -0.063 4.063
3 Si 0.979 3.021
4 H -0.264 1.264
5 H -0.292 1.292
6 H -0.291 1.291
7 C -0.240 4.240
8 H 0.081 0.919
9 N -0.621 5.621
10 C 0.190 3.810
11 C -0.181 4.181
12 H 0.109 0.891
13 C -0.106 4.106
14 H 0.112 0.888
15 C 0.164 3.836
16 N -0.715 5.715
17 C 0.506 3.494
18 O -0.583 6.583
19 C -0.129 4.129
20 C 0.090 3.910
21 H 0.078 0.922
22 C -0.095 4.095
23 C -0.187 4.187
24 C -0.075 4.075
25 C -0.152 4.152
26 C -0.089 4.089
27 C -0.165 4.165
28 C 0.073 3.927
29 O -0.321 6.321
30 C -0.158 4.158
31 H 0.123 0.877
32 C 0.149 3.851
33 H 0.249 0.751
34 H 0.051 0.949
35 H 0.003 0.997
36 H 0.065 0.935
37 H 0.060 0.940
38 H 0.418 0.582
39 H 0.124 0.876
40 H 0.158 0.842
41 H 0.113 0.887
42 H 0.117 0.883
43 H 0.151 0.849
44 H 0.155 0.845
45 H 0.152 0.848
46 H 0.120 0.880
47 H 0.030 0.970
48 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.995 -33.137 -0.201 33.676
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.596 5.596
2 C -0.257 4.257
3 Si 0.807 3.193
4 H -0.188 1.188
5 H -0.219 1.219
6 H -0.218 1.218
7 C -0.369 4.369
8 H 0.099 0.901
9 N -0.346 5.346
10 C 0.064 3.936
11 C -0.201 4.201
12 H 0.127 0.873
13 C -0.125 4.125
14 H 0.130 0.870
15 C 0.039 3.961
16 N -0.368 5.368
17 C 0.294 3.706
18 O -0.463 6.463
19 C -0.168 4.168
20 C 0.034 3.966
21 H 0.096 0.904
22 C -0.131 4.131
23 C -0.188 4.188
24 C -0.093 4.093
25 C -0.170 4.170
26 C -0.107 4.107
27 C -0.184 4.184
28 C 0.028 3.972
29 O -0.236 6.236
30 C -0.178 4.178
31 H 0.141 0.859
32 C 0.024 3.976
33 H 0.058 0.942
34 H 0.069 0.931
35 H 0.021 0.979
36 H 0.083 0.917
37 H 0.078 0.922
38 H 0.255 0.745
39 H 0.142 0.858
40 H 0.176 0.824
41 H 0.131 0.869
42 H 0.135 0.865
43 H 0.169 0.831
44 H 0.172 0.828
45 H 0.169 0.831
46 H 0.138 0.862
47 H 0.048 0.952
48 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -6.082 -32.654 -1.073 33.233
hybrid contribution 0.191 1.678 0.103 1.692
sum -5.891 -30.976 -0.970 31.547
Atomic orbital electron populations
1.70101 1.06551 1.25656 1.57291 1.25737 0.96486 1.01299 1.02156
0.85006 0.78346 0.79189 0.76737 1.18802 1.21903 1.21761 1.19433
0.91380 0.83684 1.42399 0.90081 1.45543 1.13865 1.01318 1.73849
1.20778 0.86073 0.93614 0.93121 1.23922 1.04947 0.91544 0.99735
0.87277 1.22402 0.97979 0.91869 1.00277 0.87034 1.20601 1.00515
0.82553 0.92392 1.45900 1.70508 1.08854 1.11535 1.21169 0.75411
0.85528 0.88469 1.90738 1.52815 1.85921 1.16834 1.21935 1.07235
0.89747 0.97879 1.23226 0.84786 0.95005 0.93602 0.90430 1.21890
0.97687 0.94194 0.99374 1.21140 1.02159 0.95581 0.99930 1.20700
0.95692 0.94275 0.98631 1.21444 0.97684 1.00822 0.97085 1.21202
0.99398 0.91271 0.98839 1.20570 0.98986 0.98519 1.00304 1.20046
0.95539 0.85760 0.95895 1.86962 1.32547 1.27320 1.76728 1.23927
0.90482 1.02098 1.01252 0.85891 1.21301 0.97729 0.84171 0.94388
0.94150 0.93083 0.97892 0.91675 0.92196 0.74484 0.85814 0.82435
0.86869 0.86484 0.83144 0.82766 0.83059 0.86187 0.95176 0.92441
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -57.27 10.87 21.65 0.24 -57.04 16
2 C -0.06 -3.60 5.40 84.86 0.46 -3.14 16
3 Si 0.98 45.60 29.56 68.60 2.03 47.63 16
4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16
5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16
6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16
7 C -0.24 -13.49 10.35 84.03 0.87 -12.62 16
8 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16
9 N -0.62 -32.01 3.38 -688.18 -2.33 -34.34 16
10 C 0.19 9.33 5.70 86.54 0.49 9.82 16
11 C -0.18 -6.75 6.85 -9.89 -0.07 -6.81 16
12 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16
13 C -0.11 -2.99 5.39 -10.80 -0.06 -3.05 16
14 H 0.11 3.02 8.04 -2.39 -0.02 3.00 16
15 C 0.16 4.11 5.95 86.38 0.51 4.62 16
16 N -0.72 -13.96 5.56 -463.04 -2.57 -16.53 16
17 C 0.51 11.23 7.74 87.66 0.68 11.91 16
18 O -0.58 -19.13 15.57 7.83 0.12 -19.01 16
19 C -0.13 -1.59 5.42 29.85 0.16 -1.43 16
20 C 0.09 1.55 3.06 31.18 0.10 1.64 16
21 H 0.08 1.52 8.04 -2.39 -0.02 1.50 16
22 C -0.09 -1.03 6.65 30.73 0.20 -0.82 16
23 C -0.19 -3.08 6.27 -19.53 -0.12 -3.20 16
24 C -0.08 -0.94 10.03 22.18 0.22 -0.71 16
25 C -0.15 -1.79 10.07 22.31 0.22 -1.56 16
26 C -0.09 -1.28 10.02 22.21 0.22 -1.06 16
27 C -0.17 -3.36 10.06 22.45 0.23 -3.14 16
28 C 0.07 1.65 7.04 22.68 0.16 1.81 16
29 O -0.32 -8.30 10.20 -84.26 -0.86 -9.16 16
30 C -0.16 -5.17 6.74 -9.89 -0.07 -5.23 16
31 H 0.12 3.59 8.12 -2.38 -0.02 3.57 16
32 C 0.15 5.95 7.04 86.54 0.61 6.56 16
33 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16
34 H 0.05 2.88 6.51 -2.39 -0.02 2.86 16
35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16
36 H 0.06 1.72 7.94 -2.39 -0.02 1.70 16
37 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16
38 H 0.42 5.47 8.40 -92.71 -0.78 4.69 16
39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16
40 H 0.16 0.61 8.14 -2.39 -0.02 0.60 16
41 H 0.11 0.77 7.93 -2.39 -0.02 0.75 16
42 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16
43 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16
44 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16
45 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16
46 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16
47 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
48 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16
Total: -1.00 -79.82 394.76 1.64 -78.18
By element:
Atomic # 1 Polarization: 16.50 SS G_CDS: 0.19 Total: 16.69 kcal
Atomic # 6 Polarization: -11.25 SS G_CDS: 4.82 Total: -6.42 kcal
Atomic # 7 Polarization: -103.24 SS G_CDS: -4.66 Total: -107.90 kcal
Atomic # 8 Polarization: -27.43 SS G_CDS: -0.74 Total: -28.16 kcal
Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal
Total: -79.82 1.64 -78.18 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570924095.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.045 kcal
(2) G-P(sol) polarization free energy of solvation -79.815 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.770 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.175 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.130 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds