Wall clock time and date at job start Sat Apr 11 2020 06:37:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86799 * 119.99838 * 2 1
4 4 H 1.48505 * 109.47043 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47111 * 299.99790 * 3 2 1
6 6 H 1.48504 * 109.47120 * 60.00339 * 3 2 1
7 7 C 1.38813 * 119.99927 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99917 * 180.02562 * 7 2 1
9 9 N 1.36934 * 119.99815 * 359.97438 * 7 2 1
10 10 C 1.46771 * 125.36625 * 359.97438 * 9 7 2
11 11 C 1.53912 * 107.62953 * 178.78884 * 10 9 7
12 12 H 1.08995 * 109.52443 * 100.76952 * 11 10 9
13 13 O 1.40853 * 110.30189 * 221.41406 * 11 10 9
14 14 C 1.41316 * 118.31302 * 68.00297 * 13 11 10
15 15 C 1.51956 * 111.60730 * 56.89689 * 14 13 11
16 16 N 1.44959 * 111.93854 * 319.69605 * 15 14 13
17 17 C 1.34785 * 117.34036 * 203.73125 * 16 15 14
18 18 O 1.21551 * 119.99644 * 6.34248 * 17 16 15
19 19 C 1.47839 * 120.00297 * 186.34001 * 17 16 15
20 20 C 1.39604 * 120.14459 * 29.65606 * 19 17 16
21 21 C 1.37929 * 119.85506 * 180.25480 * 20 19 17
22 22 C 1.38390 * 120.14389 * 359.76524 * 21 20 19
23 23 C 1.38333 * 120.29224 * 359.97438 * 22 21 20
24 24 C 1.50703 * 119.92776 * 180.02562 * 23 22 21
25 25 C 1.52995 * 117.49794 * 8.60544 * 24 23 22
26 26 C 1.52993 * 60.00045 * 252.50815 * 25 24 23
27 27 C 1.37986 * 120.14524 * 0.02562 * 23 22 21
28 28 C 1.44542 * 125.32542 * 24.01468 * 16 15 14
29 29 H 1.09001 * 109.64784 * 106.18778 * 28 16 15
30 30 C 1.46873 * 125.35817 * 179.97438 * 9 7 2
31 31 H 0.96999 * 120.00347 * 0.02562 * 1 2 3
32 32 H 1.09001 * 109.82202 * 59.26279 * 10 9 7
33 33 H 1.09000 * 109.82618 * 298.31076 * 10 9 7
34 34 H 1.09003 * 109.05001 * 296.34948 * 14 13 11
35 35 H 1.09002 * 109.05673 * 177.44800 * 14 13 11
36 36 H 1.09001 * 108.99083 * 199.06124 * 15 14 13
37 37 H 1.08997 * 108.99106 * 80.32743 * 15 14 13
38 38 H 1.08003 * 120.07332 * 359.97438 * 20 19 17
39 39 H 1.08000 * 119.92868 * 179.74586 * 21 20 19
40 40 H 1.08002 * 119.85312 * 180.02562 * 22 21 20
41 41 H 1.09002 * 115.54773 * 154.30665 * 24 23 22
42 42 H 1.09004 * 117.49964 * 359.97438 * 25 24 23
43 43 H 1.08994 * 117.50290 * 145.01812 * 25 24 23
44 44 H 1.08999 * 117.50143 * 252.51079 * 26 25 24
45 45 H 1.09001 * 117.52183 * 107.47971 * 26 25 24
46 46 H 1.07997 * 120.07100 * 180.02562 * 27 23 22
47 47 H 1.08995 * 110.07229 * 317.06072 * 30 9 7
48 48 H 1.09007 * 110.06849 * 78.52914 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 3.7102 1.3464 0.0006
5 1 1.8914 2.3964 -1.2125
6 1 1.8914 2.3964 1.2126
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0001
9 7 1.3255 -2.3880 -0.0005
10 6 -0.1358 -2.5252 0.0005
11 6 -0.4628 -4.0289 -0.0309
12 1 -0.7250 -4.3657 0.9720
13 8 -1.5372 -4.2771 -0.9073
14 6 -1.3310 -4.0837 -2.2919
15 6 -0.1737 -4.9224 -2.8079
16 7 0.9367 -4.9446 -1.8762
17 6 2.1596 -5.2101 -2.3768
18 8 2.3170 -5.3046 -3.5784
19 6 3.3096 -5.3862 -1.4646
20 6 3.1126 -5.8887 -0.1771
21 6 4.1890 -6.0456 0.6709
22 6 5.4629 -5.7107 0.2462
23 6 5.6657 -5.2173 -1.0301
24 6 7.0564 -4.8557 -1.4843
25 6 8.2208 -5.2423 -0.5702
26 6 7.7995 -3.7767 -0.6941
27 6 4.5974 -5.0555 -1.8884
28 6 0.8384 -4.7110 -0.4532
29 1 0.9522 -5.6539 0.0817
30 6 1.9378 -3.7230 -0.0016
31 1 -0.4850 0.8400 -0.0004
32 1 -0.5535 -2.0376 -0.8803
33 1 -0.5486 -2.0760 0.9038
34 1 -1.1174 -3.0308 -2.4762
35 1 -2.2383 -4.3606 -2.8289
36 1 0.1681 -4.5095 -3.7571
37 1 -0.5201 -5.9428 -2.9710
38 1 2.1189 -6.1497 0.1558
39 1 4.0374 -6.4304 1.6686
40 1 6.3024 -5.8358 0.9139
41 1 7.2254 -4.8978 -2.5603
42 1 7.9810 -5.7577 0.3598
43 1 9.1562 -5.5388 -1.0447
44 1 8.4576 -3.1091 -1.2501
45 1 7.2822 -3.3280 0.1540
46 1 4.7572 -4.6706 -2.8847
47 1 2.7745 -3.7503 -0.6997
48 1 2.2796 -3.9786 1.0014
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001083286331.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:24
Heat of formation + Delta-G solvation = 32.643827 kcal
Electronic energy + Delta-G solvation = -31674.334114 eV
Core-core repulsion = 27696.951744 eV
Total energy + Delta-G solvation = -3977.382369 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.71271 -40.54616 -39.66102 -38.09596 -37.24208 -36.22781 -34.27375 -32.53976
-32.02602 -31.39308 -29.55339 -28.84180 -26.73650 -25.35128 -24.90027 -24.02363
-23.22070 -22.65237 -22.17152 -20.87442 -20.25030 -19.25388 -18.43353 -18.14685
-17.61421 -17.22357 -16.92549 -16.82537 -16.39065 -16.07369 -15.76773 -15.61783
-15.51138 -15.18549 -14.90236 -14.60228 -14.50842 -14.28404 -13.93257 -13.73033
-13.45392 -13.17309 -13.02914 -12.94951 -12.88555 -12.73346 -12.46142 -12.28360
-12.13598 -12.01482 -11.96548 -11.75374 -11.60871 -11.42813 -11.33875 -11.04754
-10.79261 -10.63020 -9.89606 -9.64676 -9.35460 -8.89179 -7.89023 -5.24606
-0.08793 0.39535 1.40834 1.41789 1.51530 1.55274 1.81547 2.43523
2.66032 2.73614 3.11868 3.25316 3.29416 3.40373 3.45185 3.66451
3.73647 3.86392 3.93771 3.95755 3.98432 4.08603 4.13278 4.16315
4.26152 4.34746 4.37170 4.46220 4.54977 4.59786 4.67313 4.79817
4.79922 4.88423 4.92314 4.95187 4.96358 5.10383 5.14102 5.26310
5.32350 5.39436 5.43876 5.45953 5.49818 5.60788 5.65966 5.96434
6.09345 6.15709 6.34878 6.93548 7.05965 7.72806 8.32765 9.19914
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.008667 B = 0.005301 C = 0.003777
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3229.919508 B = 5281.058313 C = 7410.993558
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.947 5.947
2 C -0.061 4.061
3 Si 0.971 3.029
4 H -0.267 1.267
5 H -0.296 1.296
6 H -0.287 1.287
7 C -0.235 4.235
8 H 0.077 0.923
9 N -0.617 5.617
10 C 0.160 3.840
11 C 0.078 3.922
12 H 0.143 0.857
13 O -0.369 6.369
14 C 0.062 3.938
15 C 0.084 3.916
16 N -0.584 5.584
17 C 0.552 3.448
18 O -0.576 6.576
19 C -0.131 4.131
20 C -0.110 4.110
21 C -0.114 4.114
22 C -0.101 4.101
23 C -0.061 4.061
24 C -0.139 4.139
25 C -0.153 4.153
26 C -0.175 4.175
27 C -0.088 4.088
28 C 0.095 3.905
29 H 0.135 0.865
30 C 0.116 3.884
31 H 0.246 0.754
32 H 0.016 0.984
33 H 0.020 0.980
34 H 0.024 0.976
35 H 0.144 0.856
36 H 0.074 0.926
37 H 0.091 0.909
38 H 0.160 0.840
39 H 0.165 0.835
40 H 0.153 0.847
41 H 0.110 0.890
42 H 0.111 0.889
43 H 0.113 0.887
44 H 0.104 0.896
45 H 0.089 0.911
46 H 0.108 0.892
47 H 0.053 0.947
48 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.638 -15.952 2.384 18.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.596 5.596
2 C -0.254 4.254
3 Si 0.799 3.201
4 H -0.192 1.192
5 H -0.224 1.224
6 H -0.214 1.214
7 C -0.364 4.364
8 H 0.094 0.906
9 N -0.345 5.345
10 C 0.035 3.965
11 C 0.019 3.981
12 H 0.161 0.839
13 O -0.285 6.285
14 C -0.015 4.015
15 C -0.038 4.038
16 N -0.316 5.316
17 C 0.342 3.658
18 O -0.457 6.457
19 C -0.134 4.134
20 C -0.127 4.127
21 C -0.131 4.131
22 C -0.119 4.119
23 C -0.061 4.061
24 C -0.157 4.157
25 C -0.189 4.189
26 C -0.212 4.212
27 C -0.107 4.107
28 C -0.009 4.009
29 H 0.152 0.848
30 C -0.008 4.008
31 H 0.056 0.944
32 H 0.034 0.966
33 H 0.038 0.962
34 H 0.043 0.957
35 H 0.161 0.839
36 H 0.093 0.907
37 H 0.109 0.891
38 H 0.176 0.824
39 H 0.182 0.818
40 H 0.170 0.830
41 H 0.128 0.872
42 H 0.129 0.871
43 H 0.132 0.868
44 H 0.123 0.877
45 H 0.108 0.892
46 H 0.126 0.874
47 H 0.070 0.930
48 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 8.424 -15.835 1.840 18.030
hybrid contribution 0.269 1.872 -0.721 2.024
sum 8.693 -13.962 1.119 16.485
Atomic orbital electron populations
1.70168 1.06068 1.25105 1.58262 1.25549 0.96545 1.00706 1.02584
0.85121 0.78263 0.79918 0.76757 1.19182 1.22375 1.21390 1.19327
0.90654 0.83571 1.42847 0.90554 1.44452 1.01913 1.01107 1.86991
1.21463 0.84354 0.91795 0.98927 1.22915 0.85736 0.94737 0.94749
0.83932 1.86877 1.36772 1.88420 1.16479 1.22390 0.99282 0.97767
0.82058 1.21550 0.87100 1.02280 0.92876 1.46670 1.07477 1.69118
1.08297 1.18882 0.83635 0.75528 0.87722 1.90688 1.84991 1.53267
1.16797 1.19628 0.92772 1.05319 0.95728 1.22242 1.01867 0.97247
0.91374 1.21454 0.91444 0.99423 1.00804 1.21538 0.98510 0.96840
0.94977 1.19206 0.93399 0.99099 0.94372 1.21047 0.89455 1.06594
0.98581 1.23178 0.97609 0.96890 1.01232 1.23083 1.02976 0.92675
1.02466 1.20910 0.91306 0.98882 0.99642 1.22576 0.97564 0.99947
0.80786 0.84804 1.22802 0.94666 0.84031 0.99335 0.94431 0.96595
0.96175 0.95739 0.83893 0.90744 0.89067 0.82362 0.81784 0.82970
0.87211 0.87053 0.86826 0.87749 0.89241 0.87355 0.92957 0.92631
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -56.94 10.26 21.65 0.22 -56.71 16
2 C -0.06 -3.46 5.48 84.86 0.47 -3.00 16
3 Si 0.97 46.38 29.55 68.60 2.03 48.40 16
4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16
5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16
6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
7 C -0.24 -13.17 10.25 84.03 0.86 -12.31 16
8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16
9 N -0.62 -30.95 3.39 -695.54 -2.36 -33.31 16
10 C 0.16 7.74 5.02 86.64 0.43 8.18 16
11 C 0.08 2.74 3.82 30.86 0.12 2.86 16
12 H 0.14 4.16 8.14 -2.39 -0.02 4.14 16
13 O -0.37 -12.56 10.24 -146.17 -1.50 -14.05 16
14 C 0.06 1.96 6.72 71.64 0.48 2.44 16
15 C 0.08 2.67 6.22 86.32 0.54 3.21 16
16 N -0.58 -20.15 3.08 -808.82 -2.49 -22.65 16
17 C 0.55 20.62 6.84 86.78 0.59 21.21 16
18 O -0.58 -24.79 16.05 -3.88 -0.06 -24.85 16
19 C -0.13 -4.22 3.32 -20.09 -0.07 -4.29 16
20 C -0.11 -2.72 6.10 22.53 0.14 -2.58 16
21 C -0.11 -2.26 10.02 22.23 0.22 -2.04 16
22 C -0.10 -2.08 9.30 22.33 0.21 -1.88 16
23 C -0.06 -1.54 5.61 -19.90 -0.11 -1.66 16
24 C -0.14 -2.95 6.04 -11.54 -0.07 -3.02 16
25 C -0.15 -2.27 9.86 30.59 0.30 -1.97 16
26 C -0.18 -3.34 10.16 30.59 0.31 -3.03 16
27 C -0.09 -2.81 9.18 22.53 0.21 -2.60 16
28 C 0.10 3.04 2.81 45.84 0.13 3.17 16
29 H 0.14 3.15 5.13 -2.39 -0.01 3.14 16
30 C 0.12 4.49 4.72 86.84 0.41 4.90 16
31 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16
32 H 0.02 0.90 5.74 -2.39 -0.01 0.88 16
33 H 0.02 1.09 7.49 -2.39 -0.02 1.07 16
34 H 0.02 0.96 6.81 -2.39 -0.02 0.94 16
35 H 0.14 3.34 8.14 -2.39 -0.02 3.32 16
36 H 0.07 2.59 7.26 -2.39 -0.02 2.57 16
37 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16
38 H 0.16 3.31 4.25 -2.91 -0.01 3.30 16
39 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16
40 H 0.15 2.22 6.00 -2.91 -0.02 2.20 16
41 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16
42 H 0.11 1.36 6.17 -2.38 -0.01 1.35 16
43 H 0.11 1.32 8.14 -2.39 -0.02 1.31 16
44 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16
45 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16
46 H 0.11 3.75 7.92 -2.91 -0.02 3.72 16
47 H 0.05 2.17 4.32 -2.39 -0.01 2.16 16
48 H 0.06 1.95 7.48 -2.38 -0.02 1.93 16
Total: -1.00 -75.14 365.12 2.01 -73.13
By element:
Atomic # 1 Polarization: 21.45 SS G_CDS: 0.99 Total: 22.45 kcal
Atomic # 6 Polarization: 2.42 SS G_CDS: 5.17 Total: 7.59 kcal
Atomic # 7 Polarization: -108.04 SS G_CDS: -4.63 Total: -112.67 kcal
Atomic # 8 Polarization: -37.34 SS G_CDS: -1.56 Total: -38.90 kcal
Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal
Total: -75.14 2.01 -73.13 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001083286331.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.778 kcal
(2) G-P(sol) polarization free energy of solvation -75.140 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.639 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.135 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds