Wall clock time and date at job start Sat Apr 11 2020 06:36:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86803 * 119.99938 * 2 1
4 4 H 1.48504 * 109.47062 * 270.00409 * 3 2 1
5 5 H 1.48494 * 109.46940 * 30.00582 * 3 2 1
6 6 H 1.48499 * 109.47163 * 150.00468 * 3 2 1
7 7 C 1.37877 * 120.00190 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99820 * 179.97438 * 7 2 1
9 9 C 1.50704 * 119.99788 * 359.97438 * 7 2 1
10 10 O 1.42900 * 110.77743 * 298.21233 * 9 7 2
11 11 C 1.55154 * 110.71938 * 174.97729 * 9 7 2
12 12 C 1.55134 * 101.48550 * 205.97031 * 11 9 7
13 13 N 1.47423 * 104.72268 * 37.29143 * 12 11 9
14 14 C 1.34779 * 125.64738 * 155.82260 * 13 12 11
15 15 O 1.21349 * 119.99812 * 179.69121 * 14 13 12
16 16 C 1.49445 * 119.99802 * 359.69060 * 14 13 12
17 17 O 1.21349 * 120.00200 * 353.26632 * 16 14 13
18 18 N 1.34778 * 119.99846 * 172.98824 * 16 14 13
19 19 C 1.46926 * 120.63093 * 351.42887 * 18 16 14
20 20 C 1.52761 * 109.00737 * 233.58085 * 19 18 16
21 21 C 1.53038 * 109.38120 * 305.58801 * 20 19 18
22 22 C 1.53036 * 109.54068 * 61.24160 * 21 20 19
23 23 H 1.08997 * 109.52727 * 58.60042 * 22 21 20
24 24 C 1.53001 * 109.49717 * 178.68240 * 22 21 20
25 25 C 1.53009 * 109.47002 * 184.83561 * 24 22 21
26 26 F 1.39899 * 109.47046 * 180.02562 * 25 24 22
27 27 C 1.46927 * 120.63006 * 171.70227 * 18 16 14
28 28 C 1.47021 * 108.70541 * 335.55523 * 13 12 11
29 29 H 0.96999 * 120.00048 * 359.97438 * 1 2 3
30 30 H 0.96700 * 114.00032 * 61.78551 * 10 9 7
31 31 H 1.09000 * 111.00287 * 324.20275 * 11 9 7
32 32 H 1.08996 * 111.00933 * 88.01858 * 11 9 7
33 33 H 1.09004 * 110.48911 * 278.45405 * 12 11 9
34 34 H 1.08998 * 110.34610 * 156.05746 * 12 11 9
35 35 H 1.09000 * 109.58417 * 353.41524 * 19 18 16
36 36 H 1.08994 * 109.59173 * 113.83923 * 19 18 16
37 37 H 1.08996 * 109.56642 * 185.55132 * 20 19 18
38 38 H 1.09002 * 109.38400 * 65.50982 * 20 19 18
39 39 H 1.09003 * 109.46118 * 301.21551 * 21 20 19
40 40 H 1.09002 * 109.44719 * 181.25372 * 21 20 19
41 41 H 1.08998 * 109.47615 * 304.83552 * 24 22 21
42 42 H 1.08998 * 109.47163 * 64.84061 * 24 22 21
43 43 H 1.09001 * 109.46921 * 299.99643 * 25 24 22
44 44 H 1.08990 * 109.46961 * 59.99992 * 25 24 22
45 45 H 1.09003 * 109.58769 * 246.15793 * 27 18 16
46 46 H 1.08997 * 109.58718 * 6.44095 * 27 18 16
47 47 H 1.09001 * 109.88146 * 120.69865 * 28 13 12
48 48 H 1.09001 * 109.88782 * 241.87363 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4402 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 8 0.4510 -2.6226 1.1771
11 6 2.2285 -3.6973 -0.1282
12 6 1.3160 -4.7728 -0.7743
13 7 0.4641 -4.0246 -1.7164
14 6 -0.1423 -4.5381 -2.8051
15 8 -0.8281 -3.8269 -3.5097
16 6 0.0301 -5.9832 -3.1444
17 8 0.8105 -6.6657 -2.5137
18 7 -0.6854 -6.5299 -4.1473
19 6 -1.7689 -5.7753 -4.7917
20 6 -3.0469 -6.6114 -4.7564
21 6 -2.7752 -7.9809 -5.3830
22 6 -1.6976 -8.7084 -4.5759
23 1 -2.0284 -8.8191 -3.5432
24 6 -1.4502 -10.0906 -5.1837
25 6 -0.4621 -10.8635 -4.3077
26 9 -0.2355 -12.1271 -4.8638
27 6 -0.4006 -7.8940 -4.6129
28 6 0.3801 -2.6269 -1.2682
29 1 -0.4850 0.8400 0.0004
30 1 -0.2287 -1.9404 1.2641
31 1 3.0671 -3.4497 -0.7790
32 1 2.5793 -4.0215 0.8515
33 1 0.7045 -5.2605 -0.0150
34 1 1.9171 -5.5085 -1.3086
35 1 -1.9311 -4.8397 -4.2564
36 1 -1.5019 -5.5646 -5.8272
37 1 -3.8310 -6.1035 -5.3179
38 1 -3.3658 -6.7413 -3.7222
39 1 -2.4332 -7.8492 -6.4096
40 1 -3.6921 -8.5703 -5.3786
41 1 -2.3917 -10.6372 -5.2387
42 1 -1.0364 -9.9780 -6.1858
43 1 0.4793 -10.3170 -4.2529
44 1 -0.8759 -10.9760 -3.3057
45 1 -0.0197 -7.8597 -5.6336
46 1 0.3416 -8.3551 -3.9612
47 1 0.7591 -1.9646 -2.0465
48 1 -0.6540 -2.3739 -1.0344
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001118463302.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:19
Heat of formation + Delta-G solvation = -181.143090 kcal
Electronic energy + Delta-G solvation = -31203.944156 eV
Core-core repulsion = 26786.522066 eV
Total energy + Delta-G solvation = -4417.422091 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.179 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-48.54894 -42.13983 -40.44165 -39.03479 -38.87921 -36.28982 -35.25425 -34.25145
-33.23583 -31.90666 -29.99222 -29.63666 -28.05873 -26.84198 -25.09037 -24.83204
-23.22921 -22.50985 -21.51723 -21.16403 -20.22880 -19.12790 -18.24422 -18.21039
-17.45777 -17.28767 -17.06586 -16.88692 -16.58277 -16.28985 -16.08183 -15.97798
-15.64927 -15.30686 -14.85372 -14.83083 -14.65628 -14.60001 -14.28637 -14.02034
-13.98367 -13.67359 -13.54918 -13.42004 -13.03808 -12.87325 -12.60299 -12.51053
-12.38845 -12.30998 -12.28244 -12.12958 -12.10546 -11.85952 -11.56822 -11.54663
-11.21781 -11.12991 -10.68382 -10.39044 -10.20786 -9.86762 -9.67564 -8.27613
-6.43064 0.28126 1.19200 1.41988 1.44486 1.53813 2.04487 2.31527
2.40193 2.98581 3.08234 3.44952 3.68758 3.76201 3.78991 3.99335
4.01710 4.03781 4.08528 4.13565 4.18773 4.25617 4.33933 4.39932
4.54136 4.58996 4.60435 4.71978 4.75201 4.85877 4.87363 4.91757
4.95017 5.00614 5.07249 5.07920 5.11807 5.21753 5.25018 5.30191
5.38638 5.43306 5.48033 5.71943 5.94316 6.03340 6.30456 6.56439
6.65782 6.87213 7.26184 7.34085 8.78738
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.021965 B = 0.002516 C = 0.002356
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1274.431094 B =11128.162839 C =11881.734359
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C 0.028 3.972
3 Si 0.963 3.037
4 H -0.277 1.277
5 H -0.281 1.281
6 H -0.268 1.268
7 C -0.557 4.557
8 H 0.067 0.933
9 C 0.234 3.766
10 O -0.586 6.586
11 C -0.114 4.114
12 C 0.105 3.895
13 N -0.583 5.583
14 C 0.501 3.499
15 O -0.544 6.544
16 C 0.515 3.485
17 O -0.533 6.533
18 N -0.575 5.575
19 C 0.065 3.935
20 C -0.130 4.130
21 C -0.110 4.110
22 C -0.092 4.092
23 H 0.072 0.928
24 C -0.133 4.133
25 C 0.050 3.950
26 F -0.236 7.236
27 C 0.103 3.897
28 C 0.119 3.881
29 H 0.271 0.729
30 H 0.376 0.624
31 H 0.085 0.915
32 H 0.090 0.910
33 H 0.068 0.932
34 H 0.107 0.893
35 H 0.114 0.886
36 H 0.080 0.920
37 H 0.094 0.906
38 H 0.054 0.946
39 H 0.079 0.921
40 H 0.084 0.916
41 H 0.089 0.911
42 H 0.086 0.914
43 H 0.080 0.920
44 H 0.082 0.918
45 H 0.091 0.909
46 H 0.089 0.911
47 H 0.047 0.953
48 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.970 -17.659 -11.326 21.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.173 4.173
3 Si 0.788 3.212
4 H -0.203 1.203
5 H -0.207 1.207
6 H -0.192 1.192
7 C -0.595 4.595
8 H 0.085 0.915
9 C 0.194 3.806
10 O -0.394 6.394
11 C -0.152 4.152
12 C -0.016 4.016
13 N -0.315 5.315
14 C 0.285 3.715
15 O -0.425 6.425
16 C 0.298 3.702
17 O -0.410 6.410
18 N -0.308 5.308
19 C -0.056 4.056
20 C -0.168 4.168
21 C -0.147 4.147
22 C -0.111 4.111
23 H 0.091 0.909
24 C -0.171 4.171
25 C -0.005 4.005
26 F -0.217 7.217
27 C -0.018 4.018
28 C -0.003 4.003
29 H 0.081 0.919
30 H 0.226 0.774
31 H 0.103 0.897
32 H 0.108 0.892
33 H 0.086 0.914
34 H 0.125 0.875
35 H 0.131 0.869
36 H 0.099 0.901
37 H 0.113 0.887
38 H 0.073 0.927
39 H 0.097 0.903
40 H 0.102 0.898
41 H 0.108 0.892
42 H 0.104 0.896
43 H 0.098 0.902
44 H 0.100 0.900
45 H 0.109 0.891
46 H 0.107 0.893
47 H 0.065 0.935
48 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -4.701 -18.117 -11.330 21.879
hybrid contribution -0.137 1.787 0.046 1.793
sum -4.838 -16.330 -11.285 20.431
Atomic orbital electron populations
1.69784 1.06960 1.28570 1.49908 1.25779 0.95842 1.02649 0.93012
0.85475 0.78775 0.78775 0.78141 1.20325 1.20668 1.19219 1.21786
0.93928 0.91144 1.52652 0.91520 1.19703 0.87020 0.93396 0.80519
1.86125 1.51623 1.56341 1.45341 1.22851 0.97073 0.93805 1.01471
1.22733 0.92634 0.94702 0.91560 1.48782 1.46391 1.12462 1.23819
1.20259 0.80829 0.89349 0.81024 1.90471 1.39829 1.61900 1.50311
1.19784 0.81973 0.87134 0.81331 1.90653 1.37756 1.62227 1.50407
1.48009 1.33237 1.16304 1.33233 1.22778 0.85874 0.97371 0.99611
1.21846 0.96594 0.96662 1.01708 1.21581 0.98794 0.94919 0.99417
1.21386 0.94916 0.93927 1.00906 0.90923 1.22068 1.00678 0.94261
1.00107 1.22278 1.01340 0.79074 0.97823 1.92732 1.96325 1.44720
1.87926 1.22129 0.98634 0.79877 1.01139 1.22749 1.00349 0.78774
0.98471 0.91949 0.77449 0.89685 0.89172 0.91368 0.87541 0.86896
0.90148 0.88742 0.92703 0.90282 0.89758 0.89241 0.89567 0.90161
0.89998 0.89073 0.89287 0.93471 0.93558
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -48.23 10.98 21.45 0.24 -48.00 16
2 C 0.03 1.46 5.28 84.65 0.45 1.91 16
3 Si 0.96 41.31 29.54 68.60 2.03 43.34 16
4 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16
5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16
6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16
7 C -0.56 -28.85 8.12 25.60 0.21 -28.64 16
8 H 0.07 3.38 7.78 -2.91 -0.02 3.36 16
9 C 0.23 11.28 0.85 -10.35 -0.01 11.27 16
10 O -0.59 -29.39 13.08 -148.98 -1.95 -31.34 16
11 C -0.11 -4.57 6.24 32.06 0.20 -4.37 16
12 C 0.11 3.94 6.18 86.93 0.54 4.48 16
13 N -0.58 -24.36 3.32 -812.91 -2.70 -27.07 16
14 C 0.50 19.51 7.76 87.27 0.68 20.19 16
15 O -0.54 -22.60 13.52 -3.25 -0.04 -22.65 16
16 C 0.52 16.66 7.69 87.27 0.67 17.33 16
17 O -0.53 -18.00 13.19 -3.24 -0.04 -18.04 16
18 N -0.58 -14.23 2.98 -821.32 -2.45 -16.67 16
19 C 0.06 1.46 5.95 86.22 0.51 1.97 16
20 C -0.13 -2.10 6.06 30.53 0.19 -1.92 16
21 C -0.11 -1.25 5.17 30.62 0.16 -1.09 16
22 C -0.09 -1.18 2.34 -10.72 -0.03 -1.21 16
23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
24 C -0.13 -1.33 5.14 30.60 0.16 -1.18 16
25 C 0.05 0.63 7.31 71.99 0.53 1.16 16
26 F -0.24 -4.31 17.36 44.97 0.78 -3.53 16
27 C 0.10 1.81 5.33 86.36 0.46 2.27 16
28 C 0.12 5.75 5.24 86.73 0.45 6.20 16
29 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16
30 H 0.38 19.39 7.47 -74.06 -0.55 18.84 16
31 H 0.08 3.25 8.04 -2.39 -0.02 3.23 16
32 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16
33 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16
34 H 0.11 3.69 5.98 -2.39 -0.01 3.68 16
35 H 0.11 3.38 4.32 -47.00 -0.20 3.18 16
36 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16
37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16
39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16
40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16
41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16
42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16
43 H 0.08 0.98 6.70 -2.39 -0.02 0.97 16
44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
45 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16
46 H 0.09 1.71 5.73 -2.39 -0.01 1.70 16
47 H 0.05 2.48 7.81 -2.39 -0.02 2.46 16
48 H 0.05 2.43 7.92 -2.39 -0.02 2.41 16
Total: -1.00 -60.91 377.71 1.26 -59.65
By element:
Atomic # 1 Polarization: 35.68 SS G_CDS: 0.24 Total: 35.92 kcal
Atomic # 6 Polarization: 23.23 SS G_CDS: 5.16 Total: 28.39 kcal
Atomic # 7 Polarization: -86.83 SS G_CDS: -4.91 Total: -91.74 kcal
Atomic # 8 Polarization: -69.99 SS G_CDS: -2.03 Total: -72.03 kcal
Atomic # 9 Polarization: -4.31 SS G_CDS: 0.78 Total: -3.53 kcal
Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal
Total: -60.91 1.26 -59.65 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118463302.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.489 kcal
(2) G-P(sol) polarization free energy of solvation -60.912 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.401 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.654 kcal
(6) G-S(sol) free energy of system = (1) + (5) -181.143 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds