Wall clock time and date at job start Sat Apr 11 2020 06:36:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86798 * 119.99720 * 2 1
4 4 H 1.48496 * 109.47176 * 269.99611 * 3 2 1
5 5 H 1.48496 * 109.47395 * 29.99764 * 3 2 1
6 6 H 1.48503 * 109.46988 * 149.99820 * 3 2 1
7 7 C 1.37881 * 120.00051 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99661 * 0.02562 * 7 2 1
9 9 C 1.50699 * 119.99822 * 180.02562 * 7 2 1
10 10 C 1.52998 * 109.47031 * 180.02562 * 9 7 2
11 11 H 1.08994 * 109.47080 * 54.99898 * 10 9 7
12 12 N 1.46500 * 109.47169 * 295.00144 * 10 9 7
13 13 C 1.34779 * 120.00165 * 154.99751 * 12 10 9
14 14 O 1.21346 * 119.99870 * 0.02562 * 13 12 10
15 15 C 1.49452 * 120.00089 * 179.97438 * 13 12 10
16 16 O 1.21353 * 119.99678 * 0.02562 * 15 13 12
17 17 N 1.34769 * 120.00161 * 179.97438 * 15 13 12
18 18 C 1.46500 * 120.00237 * 180.02562 * 17 15 13
19 19 C 1.50706 * 109.46949 * 180.02562 * 18 17 15
20 20 C 1.30528 * 124.44598 * 94.70006 * 19 18 17
21 21 C 1.51097 * 111.10279 * 179.87578 * 20 19 18
22 22 C 1.54634 * 104.78240 * 343.93324 * 21 20 19
23 23 C 1.51092 * 124.44730 * 274.99770 * 19 18 17
24 24 C 1.50697 * 109.47139 * 175.00224 * 10 9 7
25 25 C 1.38239 * 120.00097 * 79.72608 * 24 10 9
26 26 C 1.38239 * 119.99890 * 179.78962 * 25 24 10
27 27 C 1.38236 * 119.99660 * 0.43653 * 26 25 24
28 28 C 1.38232 * 120.00525 * 359.82143 * 27 26 25
29 29 C 1.38232 * 119.99808 * 359.96553 * 28 27 26
30 30 H 0.97003 * 120.00473 * 0.02562 * 1 2 3
31 31 H 1.09004 * 109.46720 * 60.00407 * 9 7 2
32 32 H 1.09000 * 109.47092 * 300.00203 * 9 7 2
33 33 H 0.97004 * 120.00364 * 334.99651 * 12 10 9
34 34 H 0.97010 * 119.99854 * 0.02562 * 17 15 13
35 35 H 1.09000 * 109.46609 * 60.00363 * 18 17 15
36 36 H 1.09000 * 109.47175 * 300.00158 * 18 17 15
37 37 H 1.07997 * 124.44921 * 0.02562 * 20 19 18
38 38 H 1.09000 * 110.52949 * 225.01972 * 21 20 19
39 39 H 1.09000 * 110.19468 * 102.68141 * 21 20 19
40 40 H 1.08998 * 111.03849 * 266.40439 * 22 21 20
41 41 H 1.09004 * 111.04060 * 142.46896 * 22 21 20
42 42 H 1.09005 * 110.39123 * 315.23123 * 23 19 18
43 43 H 1.09003 * 110.39088 * 77.60506 * 23 19 18
44 44 H 1.07992 * 120.00068 * 0.02562 * 25 24 10
45 45 H 1.08000 * 119.99787 * 180.27584 * 26 25 24
46 46 H 1.08008 * 119.99445 * 179.83602 * 27 26 25
47 47 H 1.07995 * 120.00141 * 180.02562 * 28 27 26
48 48 H 1.08003 * 119.99979 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4465 2.6527 0.7000
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1293 0.0005
9 6 3.5115 -1.1940 0.0011
10 6 4.0216 -2.6365 0.0010
11 1 3.5873 -3.1753 -0.8410
12 7 3.6335 -3.2918 1.2525
13 6 3.5066 -4.6327 1.2999
14 8 3.7143 -5.2973 0.3061
15 6 3.1113 -5.3013 2.5768
16 8 2.9041 -4.6366 3.5707
17 7 2.9839 -6.6421 2.6241
18 6 2.5959 -7.2974 3.8756
19 6 2.5257 -8.7875 3.6616
20 6 3.5014 -9.6166 3.9154
21 6 3.1047 -11.0385 3.5933
22 6 1.5631 -11.0015 3.4775
23 6 1.3190 -9.5171 3.1190
24 6 5.5235 -2.6382 -0.1222
25 6 6.3084 -2.3916 0.9887
26 6 7.6862 -2.3976 0.8765
27 6 8.2789 -2.6411 -0.3483
28 6 7.4939 -2.8824 -1.4603
29 6 6.1163 -2.8809 -1.3473
30 1 -0.4851 0.8400 -0.0004
31 1 3.8744 -0.6800 0.8912
32 1 3.8752 -0.6803 -0.8888
33 1 3.4679 -2.7606 2.0471
34 1 3.1492 -7.1733 1.8294
35 1 1.6198 -6.9289 4.1911
36 1 3.3344 -7.0757 4.6460
37 1 4.4648 -9.3249 4.3067
38 1 3.4091 -11.7113 4.3951
39 1 3.5492 -11.3481 2.6474
40 1 1.0931 -11.2571 4.4271
41 1 1.2146 -11.6588 2.6809
42 1 0.4092 -9.1554 3.5983
43 1 1.2545 -9.3932 2.0380
44 1 5.8453 -2.1982 1.9449
45 1 8.2995 -2.2093 1.7454
46 1 9.3554 -2.6431 -0.4365
47 1 7.9570 -3.0731 -2.4171
48 1 5.5029 -3.0698 -2.2159
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001328149347.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:37
Heat of formation + Delta-G solvation = -37.091614 kcal
Electronic energy + Delta-G solvation = -28994.158221 eV
Core-core repulsion = 25013.751896 eV
Total energy + Delta-G solvation = -3980.406325 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.45167 -39.36820 -38.84067 -37.90559 -35.61589 -34.68375 -32.66841 -31.28012
-30.59411 -30.37872 -29.35737 -28.70679 -26.35672 -25.15359 -23.21052 -22.33600
-21.80954 -21.18980 -20.36501 -19.85156 -18.87117 -17.87468 -17.15041 -16.70027
-16.36174 -15.95586 -15.79779 -15.54728 -15.38165 -14.92958 -14.65749 -14.35687
-14.12774 -13.94829 -13.37391 -13.26669 -13.12483 -13.01512 -12.79277 -12.64637
-12.43014 -12.13942 -11.99669 -11.85743 -11.55154 -11.49648 -11.42404 -11.37850
-11.30692 -11.14566 -10.77157 -10.64890 -10.22104 -9.87038 -9.46792 -9.35212
-9.23103 -9.03349 -8.71466 -8.64172 -8.61417 -8.36691 -6.11130 -4.11572
1.59302 1.66250 1.66520 1.75165 2.81718 3.26566 3.34956 3.36956
3.55953 3.96104 4.15083 4.20348 4.25520 4.38231 4.71852 4.76164
4.84834 5.04516 5.12439 5.14842 5.16799 5.22171 5.23856 5.38140
5.39271 5.43123 5.50173 5.55219 5.64508 5.71148 5.76505 5.77783
5.90138 5.94281 6.16409 6.18884 6.21057 6.25163 6.35683 6.53801
6.60469 6.70219 6.72240 6.87883 6.98941 7.10815 7.25396 7.28115
7.62642 7.75165 8.04614 8.40665 8.42536 8.93373 9.49064 11.01623
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.009599 B = 0.002985 C = 0.002439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2916.180411 B = 9376.843721 C =11477.588624
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.072 3.928
3 Si 0.876 3.124
4 H -0.276 1.276
5 H -0.287 1.287
6 H -0.264 1.264
7 C -0.524 4.524
8 H 0.076 0.924
9 C -0.014 4.014
10 C 0.193 3.807
11 H 0.097 0.903
12 N -0.666 5.666
13 C 0.506 3.494
14 O -0.531 6.531
15 C 0.509 3.491
16 O -0.517 6.517
17 N -0.702 5.702
18 C 0.168 3.832
19 C -0.157 4.157
20 C -0.137 4.137
21 C -0.103 4.103
22 C -0.125 4.125
23 C -0.094 4.094
24 C -0.080 4.080
25 C -0.109 4.109
26 C -0.124 4.124
27 C -0.131 4.131
28 C -0.123 4.123
29 C -0.105 4.105
30 H 0.264 0.736
31 H 0.026 0.974
32 H 0.033 0.967
33 H 0.414 0.586
34 H 0.413 0.587
35 H 0.080 0.920
36 H 0.077 0.923
37 H 0.126 0.874
38 H 0.072 0.928
39 H 0.078 0.922
40 H 0.071 0.929
41 H 0.073 0.927
42 H 0.073 0.927
43 H 0.078 0.922
44 H 0.119 0.881
45 H 0.117 0.883
46 H 0.115 0.885
47 H 0.118 0.882
48 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.845 -17.521 5.786 21.403
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.130 4.130
3 Si 0.703 3.297
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.189 1.189
7 C -0.562 4.562
8 H 0.094 0.906
9 C -0.052 4.052
10 C 0.089 3.911
11 H 0.115 0.885
12 N -0.316 5.316
13 C 0.286 3.714
14 O -0.409 6.409
15 C 0.290 3.710
16 O -0.392 6.392
17 N -0.356 5.356
18 C 0.045 3.955
19 C -0.157 4.157
20 C -0.156 4.156
21 C -0.139 4.139
22 C -0.162 4.162
23 C -0.131 4.131
24 C -0.082 4.082
25 C -0.127 4.127
26 C -0.142 4.142
27 C -0.150 4.150
28 C -0.141 4.141
29 C -0.124 4.124
30 H 0.074 0.926
31 H 0.044 0.956
32 H 0.051 0.949
33 H 0.251 0.749
34 H 0.249 0.751
35 H 0.098 0.902
36 H 0.096 0.904
37 H 0.144 0.856
38 H 0.090 0.910
39 H 0.097 0.903
40 H 0.090 0.910
41 H 0.092 0.908
42 H 0.092 0.908
43 H 0.097 0.903
44 H 0.137 0.863
45 H 0.135 0.865
46 H 0.133 0.867
47 H 0.136 0.864
48 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 10.647 -17.358 5.807 21.175
hybrid contribution 0.350 1.007 0.023 1.066
sum 10.997 -16.352 5.830 20.550
Atomic orbital electron populations
1.69900 1.06284 1.27018 1.50209 1.24977 0.94697 0.99017 0.94322
0.86847 0.80415 0.83817 0.78648 1.20191 1.21289 1.18890 1.20987
0.88555 0.94772 1.51856 0.90629 1.19897 0.97960 0.89409 0.97924
1.20120 0.87967 0.96701 0.86289 0.88506 1.45747 1.65445 1.05408
1.15000 1.19898 0.79276 0.83932 0.88277 1.90714 1.50158 1.64207
1.35805 1.20397 0.78355 0.82950 0.89332 1.90764 1.48293 1.64019
1.36159 1.45769 1.69131 1.06388 1.14316 1.20025 1.01703 0.87550
0.86207 1.22013 0.97323 0.94226 1.02187 1.23318 0.98334 0.95260
0.98713 1.21389 0.95901 0.94813 1.01843 1.22445 0.95593 0.96261
1.01917 1.21315 0.96589 0.94024 1.01189 1.20509 0.96524 0.97477
0.93643 1.20986 0.93495 0.99671 0.98574 1.21069 0.94775 1.00907
0.97469 1.21042 0.99319 1.01432 0.93162 1.21065 0.93796 1.00802
0.98397 1.21036 0.94686 0.99341 0.97326 0.92579 0.95586 0.94869
0.74943 0.75139 0.90226 0.90438 0.85584 0.90971 0.90347 0.91041
0.90808 0.90837 0.90343 0.86327 0.86543 0.86673 0.86398 0.85873
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16
2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16
3 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16
4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16
7 C -0.52 -14.15 9.39 -34.44 -0.32 -14.47 16
8 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16
9 C -0.01 -0.32 3.56 -27.88 -0.10 -0.42 16
10 C 0.19 3.79 2.11 -69.08 -0.15 3.64 16
11 H 0.10 2.04 7.44 -51.93 -0.39 1.65 16
12 N -0.67 -12.53 4.03 -55.37 -0.22 -12.76 16
13 C 0.51 9.24 7.85 -11.58 -0.09 9.15 16
14 O -0.53 -10.38 16.14 5.50 0.09 -10.29 16
15 C 0.51 8.37 7.89 -11.59 -0.09 8.28 16
16 O -0.52 -9.53 16.48 5.49 0.09 -9.44 16
17 N -0.70 -9.13 5.54 -61.91 -0.34 -9.48 16
18 C 0.17 1.82 6.10 -5.19 -0.03 1.79 16
19 C -0.16 -1.41 5.53 -100.74 -0.56 -1.96 16
20 C -0.14 -1.09 10.59 -35.70 -0.38 -1.47 16
21 C -0.10 -0.68 6.81 -26.83 -0.18 -0.86 16
22 C -0.12 -0.82 7.19 -25.01 -0.18 -1.00 16
23 C -0.09 -0.76 6.76 -26.83 -0.18 -0.94 16
24 C -0.08 -1.40 4.91 -104.62 -0.51 -1.92 16
25 C -0.11 -1.75 9.32 -39.58 -0.37 -2.11 16
26 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16
27 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16
28 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16
29 C -0.11 -1.68 9.67 -39.58 -0.38 -2.06 16
30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
31 H 0.03 0.58 7.20 -51.93 -0.37 0.20 16
32 H 0.03 0.74 7.57 -51.93 -0.39 0.35 16
33 H 0.41 7.72 8.07 -40.82 -0.33 7.39 16
34 H 0.41 5.03 7.94 -40.82 -0.32 4.70 16
35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16
36 H 0.08 0.83 8.12 -51.93 -0.42 0.40 16
37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16
38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16
39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
44 H 0.12 1.83 7.73 -52.49 -0.41 1.42 16
45 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16
46 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16
47 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16
48 H 0.12 1.85 8.04 -52.48 -0.42 1.43 16
LS Contribution 405.29 15.07 6.11 6.11
Total: -1.00 -32.01 405.29 -10.29 -42.29
By element:
Atomic # 1 Polarization: 19.46 SS G_CDS: -7.29 Total: 12.17 kcal
Atomic # 6 Polarization: -3.93 SS G_CDS: -4.82 Total: -8.75 kcal
Atomic # 7 Polarization: -48.64 SS G_CDS: 0.21 Total: -48.43 kcal
Atomic # 8 Polarization: -19.91 SS G_CDS: 0.18 Total: -19.73 kcal
Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -32.01 -10.29 -42.29 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001328149347.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.202 kcal
(2) G-P(sol) polarization free energy of solvation -32.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.806 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.092 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds