Wall clock time and date at job start Sat Apr 11 2020 06:36:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86805 * 120.00040 * 2 1
4 4 H 1.48499 * 109.47014 * 265.22183 * 3 2 1
5 5 H 1.48500 * 109.46919 * 25.21907 * 3 2 1
6 6 H 1.48501 * 109.47053 * 145.21830 * 3 2 1
7 7 C 1.37878 * 120.00411 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99526 * 6.75002 * 7 2 1
9 9 C 1.50696 * 120.00552 * 186.75112 * 7 2 1
10 10 H 1.09007 * 109.46712 * 333.52774 * 9 7 2
11 11 C 1.50694 * 109.47237 * 213.52623 * 9 7 2
12 12 O 1.21280 * 119.99756 * 275.22260 * 11 9 7
13 13 N 1.34774 * 120.00508 * 95.22872 * 11 9 7
14 14 C 1.47429 * 125.64608 * 0.02562 * 13 11 9
15 15 C 1.54903 * 104.83326 * 204.09541 * 14 13 11
16 16 C 1.55165 * 101.58073 * 322.98967 * 15 14 13
17 17 H 1.08993 * 110.71755 * 277.13421 * 16 15 14
18 18 N 1.46505 * 110.71811 * 153.86598 * 16 15 14
19 19 C 1.46757 * 124.34982 * 121.18571 * 18 16 15
20 20 C 1.54659 * 105.38518 * 162.85158 * 19 18 16
21 21 C 1.54635 * 101.68202 * 25.76257 * 20 19 18
22 22 C 1.34421 * 124.34666 * 301.47469 * 18 16 15
23 23 O 1.21281 * 124.94753 * 0.43416 * 22 18 16
24 24 C 1.47021 * 125.65083 * 179.71815 * 13 11 9
25 25 C 1.50696 * 109.47002 * 93.52078 * 9 7 2
26 26 C 1.38240 * 119.99932 * 232.90805 * 25 9 7
27 27 C 1.38238 * 119.99898 * 179.97438 * 26 25 9
28 28 C 1.38234 * 120.00106 * 0.02598 * 27 26 25
29 29 C 1.38240 * 119.99995 * 359.97402 * 28 27 26
30 30 C 1.38234 * 120.00073 * 52.89104 * 25 9 7
31 31 H 0.96998 * 120.00041 * 359.97438 * 1 2 3
32 32 H 1.09000 * 110.36660 * 322.93462 * 14 13 11
33 33 H 1.08998 * 110.36578 * 85.14791 * 14 13 11
34 34 H 1.09006 * 111.00556 * 81.06214 * 15 14 13
35 35 H 1.08996 * 111.00957 * 204.88143 * 15 14 13
36 36 H 1.09003 * 110.24302 * 281.97787 * 19 18 16
37 37 H 1.08994 * 110.24740 * 43.97557 * 19 18 16
38 38 H 1.08996 * 111.19325 * 267.58950 * 20 19 18
39 39 H 1.09000 * 110.85759 * 143.78690 * 20 19 18
40 40 H 1.08998 * 110.48534 * 216.30525 * 21 20 19
41 41 H 1.08997 * 110.59625 * 93.72747 * 21 20 19
42 42 H 1.09001 * 109.87780 * 298.38957 * 24 13 11
43 43 H 1.08995 * 109.88492 * 59.55669 * 24 13 11
44 44 H 1.07998 * 120.00115 * 359.97438 * 26 25 9
45 45 H 1.08004 * 120.00035 * 180.02562 * 27 26 25
46 46 H 1.07998 * 120.00211 * 179.70044 * 28 27 26
47 47 H 1.07997 * 119.99775 * 179.97438 * 29 28 27
48 48 H 1.07996 * 119.99774 * 0.02562 * 30 25 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.5976 1.9881 -1.3952
5 1 1.3996 2.6797 0.5966
6 1 3.4925 1.4715 0.7987
7 6 2.0045 -1.1940 -0.0005
8 1 1.4701 -2.1260 -0.1109
9 6 3.5037 -1.1986 0.1529
10 1 3.9090 -0.2542 -0.2106
11 6 4.0868 -2.3360 -0.6454
12 8 4.1466 -3.4472 -0.1631
13 7 4.5420 -2.1184 -1.8951
14 6 4.5310 -0.8238 -2.6003
15 6 4.5490 -1.1916 -4.1049
16 6 5.4806 -2.4324 -4.1111
17 1 6.5273 -2.1287 -4.1249
18 7 5.1771 -3.3028 -5.2499
19 6 6.1436 -3.6721 -6.2906
20 6 5.5351 -4.9064 -6.9963
21 6 4.0247 -4.7043 -6.7337
22 6 3.9759 -3.8612 -5.4786
23 8 2.9956 -3.7108 -4.7806
24 6 5.1376 -3.1315 -2.7786
25 6 3.8592 -1.3713 1.6071
26 6 4.7151 -0.4755 2.2204
27 6 5.0409 -0.6336 3.5545
28 6 4.5112 -1.6877 4.2752
29 6 3.6553 -2.5834 3.6618
30 6 3.3293 -2.4251 2.3278
31 1 -0.4850 0.8400 0.0004
32 1 3.6263 -0.2668 -2.3567
33 1 5.4153 -0.2423 -2.3396
34 1 3.5501 -1.4513 -4.4557
35 1 4.9716 -0.3822 -4.7001
36 1 6.2673 -2.8524 -6.9985
37 1 7.1021 -3.9306 -5.8407
38 1 5.8891 -5.8330 -6.5444
39 1 5.7511 -4.8885 -8.0646
40 1 3.5346 -5.6637 -6.5682
41 1 3.5580 -4.1772 -7.5658
42 1 6.0435 -3.5329 -2.3244
43 1 4.4225 -3.9345 -2.9568
44 1 5.1293 0.3477 1.6573
45 1 5.7092 0.0664 4.0338
46 1 4.7695 -1.8139 5.3162
47 1 3.2419 -3.4071 4.2248
48 1 2.6608 -3.1249 1.8486
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001361369997.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:39
Heat of formation + Delta-G solvation = -31.421654 kcal
Electronic energy + Delta-G solvation = -30588.813377 eV
Core-core repulsion = 26608.652919 eV
Total energy + Delta-G solvation = -3980.160457 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.76614 -39.37301 -38.15374 -36.67582 -36.31019 -33.57740 -32.71362 -31.44154
-30.08321 -29.92104 -28.57724 -27.73066 -27.34831 -24.10208 -22.81937 -22.18097
-21.89435 -21.76998 -20.67407 -18.94866 -18.53710 -17.07232 -17.06273 -16.68267
-16.23544 -16.03413 -15.50291 -14.97660 -14.83180 -14.48363 -14.11567 -13.96553
-13.69520 -13.55914 -13.46955 -13.25597 -13.01801 -12.85007 -12.70577 -12.57873
-12.38641 -12.12701 -11.97065 -11.78313 -11.63041 -11.57576 -11.40879 -11.23356
-11.10541 -10.95310 -10.79773 -10.43577 -10.16820 -9.89797 -9.61203 -9.52809
-8.87093 -8.74341 -8.65417 -8.07331 -8.04032 -7.76327 -6.20879 -4.22857
2.18311 2.26525 2.57110 2.76121 3.15769 3.27106 3.28145 3.59942
3.75841 4.14851 4.20134 4.28320 4.49927 4.59099 4.67314 4.69023
4.81775 4.98033 5.11711 5.15390 5.25204 5.34017 5.41054 5.43928
5.56125 5.58443 5.64779 5.68109 5.72253 5.78322 5.84326 5.91092
6.04842 6.05765 6.13041 6.28184 6.29899 6.37679 6.50285 6.60656
6.77493 6.88469 6.94058 7.05842 7.21610 7.34152 7.37841 7.68028
7.86223 8.14805 8.17354 8.37827 8.84724 9.09546 9.36170 10.90802
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.013559 B = 0.003570 C = 0.003221
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2064.484435 B = 7842.134102 C = 8690.896814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.881 5.881
2 C 0.085 3.915
3 Si 0.859 3.141
4 H -0.271 1.271
5 H -0.284 1.284
6 H -0.253 1.253
7 C -0.503 4.503
8 H 0.082 0.918
9 C 0.041 3.959
10 H 0.055 0.945
11 C 0.555 3.445
12 O -0.551 6.551
13 N -0.616 5.616
14 C 0.102 3.898
15 C -0.144 4.144
16 C 0.146 3.854
17 H 0.103 0.897
18 N -0.616 5.616
19 C 0.104 3.896
20 C -0.131 4.131
21 C -0.156 4.156
22 C 0.509 3.491
23 O -0.506 6.506
24 C 0.102 3.898
25 C -0.040 4.040
26 C -0.133 4.133
27 C -0.134 4.134
28 C -0.141 4.141
29 C -0.134 4.134
30 C -0.065 4.065
31 H 0.268 0.732
32 H 0.090 0.910
33 H 0.063 0.937
34 H 0.092 0.908
35 H 0.081 0.919
36 H 0.071 0.929
37 H 0.078 0.922
38 H 0.082 0.918
39 H 0.089 0.911
40 H 0.100 0.900
41 H 0.103 0.897
42 H 0.063 0.937
43 H 0.075 0.925
44 H 0.110 0.890
45 H 0.109 0.891
46 H 0.108 0.892
47 H 0.111 0.889
48 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.642 -3.176 -12.910 20.528
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.516 5.516
2 C -0.120 4.120
3 Si 0.685 3.315
4 H -0.196 1.196
5 H -0.210 1.210
6 H -0.178 1.178
7 C -0.541 4.541
8 H 0.100 0.900
9 C 0.019 3.981
10 H 0.073 0.927
11 C 0.347 3.653
12 O -0.428 6.428
13 N -0.352 5.352
14 C -0.021 4.021
15 C -0.183 4.183
16 C 0.043 3.957
17 H 0.121 0.879
18 N -0.352 5.352
19 C -0.020 4.020
20 C -0.169 4.169
21 C -0.196 4.196
22 C 0.296 3.704
23 O -0.380 6.380
24 C -0.023 4.023
25 C -0.041 4.041
26 C -0.151 4.151
27 C -0.152 4.152
28 C -0.160 4.160
29 C -0.152 4.152
30 C -0.083 4.083
31 H 0.078 0.922
32 H 0.109 0.891
33 H 0.082 0.918
34 H 0.110 0.890
35 H 0.100 0.900
36 H 0.090 0.910
37 H 0.096 0.904
38 H 0.101 0.899
39 H 0.107 0.893
40 H 0.119 0.881
41 H 0.121 0.879
42 H 0.081 0.919
43 H 0.093 0.907
44 H 0.128 0.872
45 H 0.127 0.873
46 H 0.126 0.874
47 H 0.129 0.871
48 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 14.930 -3.556 -12.122 19.557
hybrid contribution 0.324 1.065 -0.122 1.120
sum 15.254 -2.491 -12.244 19.718
Atomic orbital electron populations
1.69868 1.06238 1.27345 1.48189 1.24961 0.94711 0.98636 0.93664
0.87116 0.81264 0.84018 0.79063 1.19633 1.20990 1.17760 1.20480
0.86451 0.95593 1.51547 0.89955 1.18306 0.98525 0.92953 0.88302
0.92656 1.20987 0.74194 0.90985 0.79174 1.90572 1.56491 1.25839
1.69891 1.48304 1.62830 1.09463 1.14600 1.22251 1.02670 0.86881
0.90329 1.23184 1.01777 0.96707 0.96620 1.21977 0.99635 0.89680
0.84426 0.87862 1.48257 1.12195 1.49556 1.25168 1.22112 0.92802
0.97101 0.89936 1.22618 0.94410 0.98213 1.01693 1.22349 0.97958
1.01871 0.97460 1.20946 0.82596 0.80198 0.86617 1.90861 1.34275
1.61398 1.51497 1.22020 0.98442 0.92956 0.88840 1.20178 0.93145
0.93776 0.97046 1.21040 0.99231 0.99701 0.95159 1.20871 1.01279
0.98528 0.94559 1.20881 0.99702 0.96374 0.99003 1.21081 0.99288
0.99410 0.95387 1.21015 0.97445 0.97021 0.92828 0.92186 0.89147
0.91845 0.88986 0.89994 0.91047 0.90375 0.89928 0.89274 0.88108
0.87925 0.91915 0.90710 0.87220 0.87325 0.87368 0.87075 0.85729
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -26.42 13.96 55.43 0.77 -25.65 16
2 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16
3 Si 0.86 20.18 27.04 -169.99 -4.60 15.58 16
4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
6 H -0.25 -5.59 5.41 56.52 0.31 -5.28 16
7 C -0.50 -14.13 8.16 -34.44 -0.28 -14.41 16
8 H 0.08 2.63 8.06 -52.48 -0.42 2.20 16
9 C 0.04 0.99 1.42 -94.08 -0.13 0.86 16
10 H 0.06 1.26 3.82 -51.93 -0.20 1.06 16
11 C 0.56 13.22 6.82 -10.99 -0.07 13.15 16
12 O -0.55 -14.44 15.53 5.56 0.09 -14.35 16
13 N -0.62 -12.28 3.33 -170.52 -0.57 -12.84 16
14 C 0.10 1.70 6.24 -2.53 -0.02 1.69 16
15 C -0.14 -1.98 6.58 -24.58 -0.16 -2.15 16
16 C 0.15 1.80 3.61 -66.08 -0.24 1.57 16
17 H 0.10 0.95 8.11 -51.93 -0.42 0.52 16
18 N -0.62 -6.78 2.95 -162.65 -0.48 -7.26 16
19 C 0.10 0.66 7.33 -3.03 -0.02 0.63 16
20 C -0.13 -0.70 7.19 -25.00 -0.18 -0.88 16
21 C -0.16 -1.31 6.86 -26.74 -0.18 -1.49 16
22 C 0.51 6.90 7.06 -10.86 -0.08 6.82 16
23 O -0.51 -9.79 15.18 5.56 0.08 -9.71 16
24 C 0.10 1.72 6.36 -3.06 -0.02 1.70 16
25 C -0.04 -0.95 4.66 -104.62 -0.49 -1.43 16
26 C -0.13 -2.76 9.07 -39.58 -0.36 -3.12 16
27 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16
28 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16
29 C -0.13 -2.65 10.05 -39.58 -0.40 -3.05 16
30 C -0.07 -1.51 8.10 -39.58 -0.32 -1.83 16
31 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16
32 H 0.09 1.73 7.45 -51.93 -0.39 1.34 16
33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
34 H 0.09 1.55 6.57 -51.93 -0.34 1.21 16
35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16
39 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16
40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16
41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16
42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
43 H 0.07 1.49 6.38 -51.93 -0.33 1.16 16
44 H 0.11 2.10 7.26 -52.49 -0.38 1.72 16
45 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16
46 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16
47 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16
48 H 0.12 3.12 7.49 -52.49 -0.39 2.73 16
LS Contribution 383.57 15.07 5.78 5.78
Total: -1.00 -36.33 383.57 -9.95 -46.27
By element:
Atomic # 1 Polarization: 14.86 SS G_CDS: -7.18 Total: 7.68 kcal
Atomic # 6 Polarization: -1.65 SS G_CDS: -3.84 Total: -5.49 kcal
Atomic # 7 Polarization: -45.48 SS G_CDS: -0.27 Total: -45.76 kcal
Atomic # 8 Polarization: -24.23 SS G_CDS: 0.17 Total: -24.06 kcal
Atomic # 14 Polarization: 20.18 SS G_CDS: -4.60 Total: 15.58 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -36.33 -9.95 -46.27 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001361369997.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.850 kcal
(2) G-P(sol) polarization free energy of solvation -36.326 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.476 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.422 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds