Wall clock time and date at job start Sat Apr 11 2020 06:36:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86805 * 120.00040 * 2 1
4 4 H 1.48499 * 109.47014 * 265.22183 * 3 2 1
5 5 H 1.48500 * 109.46919 * 25.21907 * 3 2 1
6 6 H 1.48501 * 109.47053 * 145.21830 * 3 2 1
7 7 C 1.37878 * 120.00411 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99526 * 6.75002 * 7 2 1
9 9 C 1.50696 * 120.00552 * 186.75112 * 7 2 1
10 10 H 1.09007 * 109.46712 * 333.52774 * 9 7 2
11 11 C 1.50694 * 109.47237 * 213.52623 * 9 7 2
12 12 O 1.21280 * 119.99756 * 275.22260 * 11 9 7
13 13 N 1.34774 * 120.00508 * 95.22872 * 11 9 7
14 14 C 1.47429 * 125.64608 * 0.02562 * 13 11 9
15 15 C 1.54903 * 104.83326 * 204.09541 * 14 13 11
16 16 C 1.55165 * 101.58073 * 322.98967 * 15 14 13
17 17 H 1.08993 * 110.71755 * 277.13421 * 16 15 14
18 18 N 1.46505 * 110.71811 * 153.86598 * 16 15 14
19 19 C 1.46757 * 124.34982 * 121.18571 * 18 16 15
20 20 C 1.54659 * 105.38518 * 162.85158 * 19 18 16
21 21 C 1.54635 * 101.68202 * 25.76257 * 20 19 18
22 22 C 1.34421 * 124.34666 * 301.47469 * 18 16 15
23 23 O 1.21281 * 124.94753 * 0.43416 * 22 18 16
24 24 C 1.47021 * 125.65083 * 179.71815 * 13 11 9
25 25 C 1.50696 * 109.47002 * 93.52078 * 9 7 2
26 26 C 1.38240 * 119.99932 * 232.90805 * 25 9 7
27 27 C 1.38238 * 119.99898 * 179.97438 * 26 25 9
28 28 C 1.38234 * 120.00106 * 0.02598 * 27 26 25
29 29 C 1.38240 * 119.99995 * 359.97402 * 28 27 26
30 30 C 1.38234 * 120.00073 * 52.89104 * 25 9 7
31 31 H 0.96998 * 120.00041 * 359.97438 * 1 2 3
32 32 H 1.09000 * 110.36660 * 322.93462 * 14 13 11
33 33 H 1.08998 * 110.36578 * 85.14791 * 14 13 11
34 34 H 1.09006 * 111.00556 * 81.06214 * 15 14 13
35 35 H 1.08996 * 111.00957 * 204.88143 * 15 14 13
36 36 H 1.09003 * 110.24302 * 281.97787 * 19 18 16
37 37 H 1.08994 * 110.24740 * 43.97557 * 19 18 16
38 38 H 1.08996 * 111.19325 * 267.58950 * 20 19 18
39 39 H 1.09000 * 110.85759 * 143.78690 * 20 19 18
40 40 H 1.08998 * 110.48534 * 216.30525 * 21 20 19
41 41 H 1.08997 * 110.59625 * 93.72747 * 21 20 19
42 42 H 1.09001 * 109.87780 * 298.38957 * 24 13 11
43 43 H 1.08995 * 109.88492 * 59.55669 * 24 13 11
44 44 H 1.07998 * 120.00115 * 359.97438 * 26 25 9
45 45 H 1.08004 * 120.00035 * 180.02562 * 27 26 25
46 46 H 1.07998 * 120.00211 * 179.70044 * 28 27 26
47 47 H 1.07997 * 119.99775 * 179.97438 * 29 28 27
48 48 H 1.07996 * 119.99774 * 0.02562 * 30 25 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.5976 1.9881 -1.3952
5 1 1.3996 2.6797 0.5966
6 1 3.4925 1.4715 0.7987
7 6 2.0045 -1.1940 -0.0005
8 1 1.4701 -2.1260 -0.1109
9 6 3.5037 -1.1986 0.1529
10 1 3.9090 -0.2542 -0.2106
11 6 4.0868 -2.3360 -0.6454
12 8 4.1466 -3.4472 -0.1631
13 7 4.5420 -2.1184 -1.8951
14 6 4.5310 -0.8238 -2.6003
15 6 4.5490 -1.1916 -4.1049
16 6 5.4806 -2.4324 -4.1111
17 1 6.5273 -2.1287 -4.1249
18 7 5.1771 -3.3028 -5.2499
19 6 6.1436 -3.6721 -6.2906
20 6 5.5351 -4.9064 -6.9963
21 6 4.0247 -4.7043 -6.7337
22 6 3.9759 -3.8612 -5.4786
23 8 2.9956 -3.7108 -4.7806
24 6 5.1376 -3.1315 -2.7786
25 6 3.8592 -1.3713 1.6071
26 6 4.7151 -0.4755 2.2204
27 6 5.0409 -0.6336 3.5545
28 6 4.5112 -1.6877 4.2752
29 6 3.6553 -2.5834 3.6618
30 6 3.3293 -2.4251 2.3278
31 1 -0.4850 0.8400 0.0004
32 1 3.6263 -0.2668 -2.3567
33 1 5.4153 -0.2423 -2.3396
34 1 3.5501 -1.4513 -4.4557
35 1 4.9716 -0.3822 -4.7001
36 1 6.2673 -2.8524 -6.9985
37 1 7.1021 -3.9306 -5.8407
38 1 5.8891 -5.8330 -6.5444
39 1 5.7511 -4.8885 -8.0646
40 1 3.5346 -5.6637 -6.5682
41 1 3.5580 -4.1772 -7.5658
42 1 6.0435 -3.5329 -2.3244
43 1 4.4225 -3.9345 -2.9568
44 1 5.1293 0.3477 1.6573
45 1 5.7092 0.0664 4.0338
46 1 4.7695 -1.8139 5.3162
47 1 3.2419 -3.4071 4.2248
48 1 2.6608 -3.1249 1.8486
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001361369997.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:38
Heat of formation + Delta-G solvation = -56.935120 kcal
Electronic energy + Delta-G solvation = -30589.919723 eV
Core-core repulsion = 26608.652919 eV
Total energy + Delta-G solvation = -3981.266804 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.83198 -40.95855 -39.65926 -38.19323 -37.35098 -35.56996 -33.90066 -33.31266
-31.65441 -31.15257 -30.00752 -28.95298 -28.40868 -25.90477 -24.42139 -23.37966
-23.04368 -22.74931 -22.24726 -20.24759 -19.94898 -19.13384 -18.26923 -17.88148
-17.58079 -17.31013 -16.86914 -16.69984 -16.14733 -15.93940 -15.76049 -15.28582
-15.03414 -14.77388 -14.70140 -14.53957 -14.24051 -14.12499 -14.10747 -14.00658
-13.74668 -13.66417 -13.42137 -13.28240 -12.90283 -12.78793 -12.62943 -12.58764
-12.33673 -12.13140 -12.05017 -11.96081 -11.78429 -11.66279 -11.55673 -10.81122
-10.69459 -10.68313 -9.72855 -9.66362 -9.63629 -9.40832 -8.39716 -6.49763
0.59479 0.67025 1.28831 1.34472 1.44841 1.54097 1.73944 1.81330
2.28328 2.31510 2.91990 3.10655 3.34282 3.44395 3.57092 3.69008
3.96693 4.04292 4.08290 4.12364 4.15654 4.20600 4.22331 4.28907
4.33696 4.39642 4.45716 4.57102 4.63940 4.68353 4.75850 4.79358
4.80360 4.84044 4.88401 4.89905 5.08626 5.11804 5.17697 5.26473
5.29804 5.35062 5.40576 5.66338 5.66897 5.72517 5.92809 6.14481
6.16787 6.27286 6.46559 6.58325 7.13720 7.18462 7.27321 8.77064
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.013559 B = 0.003570 C = 0.003221
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2064.484435 B = 7842.134102 C = 8690.896814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.938 5.938
2 C 0.025 3.975
3 Si 0.931 3.069
4 H -0.243 1.243
5 H -0.284 1.284
6 H -0.222 1.222
7 C -0.509 4.509
8 H 0.010 0.990
9 C 0.050 3.950
10 H 0.076 0.924
11 C 0.542 3.458
12 O -0.593 6.593
13 N -0.619 5.619
14 C 0.091 3.909
15 C -0.136 4.136
16 C 0.159 3.841
17 H 0.158 0.842
18 N -0.613 5.613
19 C 0.098 3.902
20 C -0.119 4.119
21 C -0.152 4.152
22 C 0.490 3.510
23 O -0.585 6.585
24 C 0.097 3.903
25 C -0.072 4.072
26 C -0.141 4.141
27 C -0.123 4.123
28 C -0.131 4.131
29 C -0.139 4.139
30 C -0.102 4.102
31 H 0.271 0.729
32 H 0.058 0.942
33 H 0.111 0.889
34 H 0.049 0.951
35 H 0.131 0.869
36 H 0.099 0.901
37 H 0.101 0.899
38 H 0.085 0.915
39 H 0.123 0.877
40 H 0.095 0.905
41 H 0.119 0.881
42 H 0.075 0.925
43 H 0.029 0.971
44 H 0.132 0.868
45 H 0.157 0.843
46 H 0.154 0.846
47 H 0.130 0.870
48 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.412 -0.169 -13.793 25.471
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.174 4.174
3 Si 0.751 3.249
4 H -0.166 1.166
5 H -0.210 1.210
6 H -0.145 1.145
7 C -0.547 4.547
8 H 0.028 0.972
9 C 0.028 3.972
10 H 0.094 0.906
11 C 0.333 3.667
12 O -0.473 6.473
13 N -0.353 5.353
14 C -0.031 4.031
15 C -0.174 4.174
16 C 0.055 3.945
17 H 0.175 0.825
18 N -0.346 5.346
19 C -0.023 4.023
20 C -0.156 4.156
21 C -0.192 4.192
22 C 0.280 3.720
23 O -0.465 6.465
24 C -0.027 4.027
25 C -0.073 4.073
26 C -0.159 4.159
27 C -0.141 4.141
28 C -0.148 4.148
29 C -0.157 4.157
30 C -0.121 4.121
31 H 0.080 0.920
32 H 0.076 0.924
33 H 0.128 0.872
34 H 0.068 0.932
35 H 0.149 0.851
36 H 0.117 0.883
37 H 0.120 0.880
38 H 0.104 0.896
39 H 0.142 0.858
40 H 0.114 0.886
41 H 0.137 0.863
42 H 0.093 0.907
43 H 0.047 0.953
44 H 0.150 0.850
45 H 0.174 0.826
46 H 0.171 0.829
47 H 0.148 0.852
48 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 20.781 -0.559 -13.086 24.564
hybrid contribution -1.517 -0.051 0.179 1.528
sum 19.264 -0.610 -12.907 23.196
Atomic orbital electron populations
1.70054 1.08692 1.28735 1.50108 1.26005 0.95575 1.03281 0.92554
0.86005 0.80593 0.77261 0.81086 1.16646 1.21037 1.14506 1.20388
0.89029 0.93133 1.52114 0.97197 1.18150 0.95357 0.93882 0.89794
0.90625 1.21039 0.74520 0.90413 0.80731 1.90524 1.58303 1.27089
1.71421 1.48373 1.61328 1.11885 1.13673 1.22608 1.03181 0.85408
0.91942 1.23150 1.00421 0.98916 0.94944 1.22028 1.01801 0.88354
0.82293 0.82489 1.48454 1.12480 1.48299 1.25359 1.22536 0.92302
0.98337 0.89127 1.22684 0.91079 0.98051 1.03799 1.22391 1.01031
1.00652 0.95108 1.21968 0.82329 0.80300 0.87433 1.90823 1.37174
1.64146 1.54353 1.22223 0.97253 0.91926 0.91322 1.20172 0.95471
0.95285 0.96325 1.21324 0.98551 0.99373 0.96647 1.21415 1.00509
0.98728 0.93404 1.21388 0.97561 0.94919 1.00962 1.21349 0.99687
1.00739 0.93910 1.20867 0.98770 0.97507 0.94935 0.91961 0.92354
0.87151 0.93236 0.85123 0.88311 0.88033 0.89647 0.85825 0.88627
0.86339 0.90670 0.95253 0.84970 0.82583 0.82853 0.85221 0.90467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -60.51 13.96 21.45 0.30 -60.21 16
2 C 0.02 1.48 5.47 84.66 0.46 1.95 16
3 Si 0.93 41.81 27.04 68.60 1.86 43.66 16
4 H -0.24 -9.77 7.11 99.48 0.71 -9.07 16
5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
6 H -0.22 -8.81 5.41 99.48 0.54 -8.28 16
7 C -0.51 -31.41 8.16 25.60 0.21 -31.20 16
8 H 0.01 0.71 8.06 -2.91 -0.02 0.69 16
9 C 0.05 2.54 1.42 -13.04 -0.02 2.52 16
10 H 0.08 3.43 3.82 -2.38 -0.01 3.42 16
11 C 0.54 27.82 6.82 87.66 0.60 28.42 16
12 O -0.59 -34.27 15.53 -3.03 -0.05 -34.31 16
13 N -0.62 -25.77 3.33 -811.80 -2.70 -28.47 16
14 C 0.09 2.95 6.24 86.85 0.54 3.49 16
15 C -0.14 -3.55 6.58 31.99 0.21 -3.34 16
16 C 0.16 3.59 3.61 46.19 0.17 3.76 16
17 H 0.16 1.97 8.11 -2.39 -0.02 1.95 16
18 N -0.61 -12.49 2.95 -787.09 -2.32 -14.81 16
19 C 0.10 0.81 7.33 86.90 0.64 1.44 16
20 C -0.12 -0.84 7.19 31.72 0.23 -0.61 16
21 C -0.15 -2.44 6.86 30.59 0.21 -2.23 16
22 C 0.49 13.86 7.06 87.90 0.62 14.48 16
23 O -0.59 -25.22 15.18 -3.03 -0.05 -25.27 16
24 C 0.10 3.38 6.36 86.73 0.55 3.93 16
25 C -0.07 -3.45 4.66 -19.87 -0.09 -3.54 16
26 C -0.14 -5.49 9.07 22.27 0.20 -5.29 16
27 C -0.12 -3.96 10.05 22.27 0.22 -3.73 16
28 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16
29 C -0.14 -5.54 10.05 22.27 0.22 -5.32 16
30 C -0.10 -5.12 8.10 22.27 0.18 -4.94 16
31 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16
32 H 0.06 2.26 7.45 -2.39 -0.02 2.25 16
33 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16
34 H 0.05 1.75 6.57 -2.38 -0.02 1.73 16
35 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16
36 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16
37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16
38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16
39 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16
40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16
41 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16
42 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16
43 H 0.03 1.29 6.38 -2.39 -0.02 1.27 16
44 H 0.13 4.47 7.26 -2.91 -0.02 4.45 16
45 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16
46 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16
47 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16
48 H 0.08 4.45 7.49 -2.91 -0.02 4.43 16
Total: -1.00 -97.39 383.57 3.21 -94.18
By element:
Atomic # 1 Polarization: 28.69 SS G_CDS: 0.79 Total: 29.48 kcal
Atomic # 6 Polarization: -9.63 SS G_CDS: 5.38 Total: -4.26 kcal
Atomic # 7 Polarization: -98.77 SS G_CDS: -4.73 Total: -103.50 kcal
Atomic # 8 Polarization: -59.49 SS G_CDS: -0.09 Total: -59.58 kcal
Atomic # 14 Polarization: 41.81 SS G_CDS: 1.86 Total: 43.66 kcal
Total: -97.39 3.21 -94.18 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001361369997.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.249 kcal
(2) G-P(sol) polarization free energy of solvation -97.391 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.142 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.184 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.935 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds