Wall clock time and date at job start Sat Apr 11 2020 06:36:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47204 * 179.97438 * 2 1
4 4 O 1.42903 * 113.00973 * 345.59865 * 3 2 1
5 5 C 1.53928 * 113.73150 * 117.23453 * 3 2 1
6 6 N 1.47963 * 86.17871 * 138.07934 * 5 3 2
7 7 C 1.46906 * 110.99648 * 222.41748 * 6 5 3
8 8 H 1.08997 * 109.47168 * 55.00002 * 7 6 5
9 9 C 1.53003 * 109.47160 * 294.99474 * 7 6 5
10 10 C 1.50706 * 109.46627 * 175.00224 * 7 6 5
11 11 O 1.21281 * 120.00266 * 9.86337 * 10 7 6
12 12 N 1.34777 * 119.99610 * 189.86928 * 10 7 6
13 13 C 1.46499 * 119.99976 * 4.11119 * 12 10 7
14 14 C 1.50700 * 109.47127 * 82.19082 * 13 12 10
15 15 H 1.07997 * 119.99769 * 359.97438 * 14 13 12
16 16 C 1.37875 * 119.99719 * 179.97438 * 14 13 12
17 17 N 1.31506 * 120.00511 * 0.02562 * 16 14 13
18 18 Si 1.86802 * 119.99887 * 179.97438 * 16 14 13
19 19 H 1.48502 * 109.47033 * 90.00004 * 18 16 14
20 20 H 1.48493 * 109.47354 * 210.00327 * 18 16 14
21 21 H 1.48506 * 109.46850 * 330.00423 * 18 16 14
22 22 C 1.39929 * 119.99749 * 184.11263 * 12 10 7
23 23 C 1.38869 * 120.07185 * 2.30393 * 22 12 10
24 24 C 1.38108 * 119.92800 * 179.71994 * 23 22 12
25 25 C 1.38285 * 120.07399 * 0.57141 * 24 23 22
26 26 C 1.50695 * 119.93294 * 179.70008 * 25 24 23
27 27 C 1.38282 * 120.13283 * 359.68360 * 25 24 23
28 28 C 1.38105 * 120.07557 * 0.03797 * 27 25 24
29 29 C 1.47964 * 90.76186 * 335.30839 * 6 5 3
30 30 H 4.45331 * 5.13544 * 179.97438 * 4 1 2
31 31 H 0.96704 * 113.99871 * 311.63730 * 4 3 2
32 32 H 1.08998 * 113.76305 * 252.39676 * 5 3 2
33 33 H 1.09006 * 113.76128 * 23.76159 * 5 3 2
34 34 H 1.09003 * 109.46484 * 66.49193 * 9 7 6
35 35 H 1.09001 * 109.46977 * 186.48806 * 9 7 6
36 36 H 1.08996 * 109.47419 * 306.49315 * 9 7 6
37 37 H 1.09003 * 109.46901 * 202.18669 * 13 12 10
38 38 H 1.08997 * 109.47361 * 322.18334 * 13 12 10
39 39 H 0.97000 * 120.00894 * 179.97438 * 17 16 14
40 40 H 1.07999 * 120.03179 * 359.97235 * 23 22 12
41 41 H 1.08002 * 119.96248 * 180.25360 * 24 23 22
42 42 H 1.09004 * 109.46789 * 269.98037 * 26 25 24
43 43 H 1.09001 * 109.46929 * 29.97878 * 26 25 24
44 44 H 1.08994 * 109.47462 * 149.98046 * 26 25 24
45 45 H 1.08008 * 119.96105 * 180.02562 * 27 25 24
46 46 H 1.08000 * 120.03667 * 179.97438 * 28 27 25
47 47 H 1.08999 * 113.75982 * 270.37301 * 29 6 5
48 48 H 1.08996 * 113.75623 * 139.00548 * 29 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 8 3.2052 -1.2731 0.3271
5 6 3.2653 0.6458 -1.2529
6 7 4.2309 1.2796 -0.3282
7 6 4.4606 2.6850 -0.6891
8 1 3.5068 3.2112 -0.7259
9 6 5.1356 2.7556 -2.0604
10 6 5.3505 3.3294 0.3425
11 8 5.8979 2.6471 1.1825
12 7 5.5378 4.6640 0.3315
13 6 4.8069 5.4985 -0.6254
14 6 3.4259 5.7815 -0.0927
15 1 3.1229 5.3797 0.8628
16 6 2.5493 6.5535 -0.8253
17 7 2.9181 7.0424 -1.9890
18 14 0.8372 6.9038 -0.1654
19 1 0.8644 8.1470 0.6464
20 1 -0.1054 7.0740 -1.3001
21 1 0.3917 5.7688 0.6823
22 6 6.4305 5.2526 1.2341
23 6 7.1598 4.4586 2.1094
24 6 8.0444 5.0422 2.9950
25 6 8.1956 6.4166 3.0189
26 6 9.1567 7.0505 3.9913
27 6 7.4669 7.2103 2.1522
28 6 6.5850 6.6325 1.2603
29 6 3.2650 1.1697 0.7873
30 1 -1.0498 -0.0003 0.0003
31 1 2.8189 -1.6819 1.1138
32 1 3.7185 -0.0710 -1.9376
33 1 2.6058 1.3551 -1.7532
34 1 4.4460 2.3949 -2.8236
35 1 5.4101 3.7879 -2.2774
36 1 6.0311 2.1344 -2.0570
37 1 5.3403 6.4381 -0.7697
38 1 4.7287 4.9751 -1.5783
39 1 2.3014 7.5853 -2.5046
40 1 7.0384 3.3856 2.0947
41 1 8.6148 4.4249 3.6732
42 1 8.6364 7.2742 4.9226
43 1 9.9786 6.3628 4.1903
44 1 9.5500 7.9729 3.5642
45 1 7.5875 8.2834 2.1730
46 1 6.0159 7.2530 0.5839
47 1 2.6055 2.0322 0.8838
48 1 3.7181 0.8714 1.7327
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000934447601.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:54
Heat of formation + Delta-G solvation = 64.413974 kcal
Electronic energy + Delta-G solvation = -30504.857708 eV
Core-core repulsion = 26528.852996 eV
Total energy + Delta-G solvation = -3976.004712 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.83746 -39.79934 -37.98410 -35.82683 -35.42791 -33.19115 -32.87546 -32.18271
-30.83430 -30.34230 -27.64419 -26.96310 -26.33075 -25.73201 -23.81946 -23.09940
-21.79486 -21.23448 -20.16977 -19.46913 -18.51880 -16.98103 -16.89020 -16.47828
-16.21048 -15.80944 -15.39574 -14.99826 -14.70140 -14.60093 -14.47647 -13.97803
-13.54981 -13.43783 -13.27712 -13.09947 -12.85827 -12.68469 -12.54879 -12.22154
-12.14517 -11.94516 -11.82940 -11.74029 -11.52589 -11.26616 -11.21084 -11.07482
-11.01956 -10.80115 -10.70397 -10.54728 -10.47418 -10.29965 -10.08002 -9.81883
-9.09616 -8.81189 -8.68192 -8.39149 -8.34142 -7.09756 -6.33779 -4.42733
1.84120 2.01603 2.54917 2.56975 3.12176 3.18665 3.20136 3.26656
3.46104 3.82382 3.96530 4.18775 4.38224 4.44947 4.67305 4.89016
4.98991 5.03840 5.29230 5.31815 5.37161 5.48232 5.59404 5.61572
5.66650 5.67779 5.74216 5.79068 5.81683 5.94785 5.98452 6.05294
6.09706 6.10547 6.21732 6.27330 6.31564 6.45977 6.55870 6.78262
6.88767 6.96223 7.06324 7.10984 7.18451 7.30120 7.40513 7.48494
7.58360 7.82102 7.87364 8.09259 8.62012 8.81618 9.25057 10.71887
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.008390 B = 0.004454 C = 0.003299
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3336.460671 B = 6284.903630 C = 8485.925885
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.214 4.214
3 C 0.210 3.790
4 O -0.518 6.518
5 C 0.027 3.973
6 N -0.443 5.443
7 C 0.031 3.969
8 H 0.097 0.903
9 C -0.145 4.145
10 C 0.529 3.471
11 O -0.524 6.524
12 N -0.535 5.535
13 C 0.216 3.784
14 C -0.542 4.542
15 H 0.061 0.939
16 C 0.070 3.930
17 N -0.886 5.886
18 Si 0.895 3.105
19 H -0.277 1.277
20 H -0.283 1.283
21 H -0.273 1.273
22 C 0.168 3.832
23 C -0.178 4.178
24 C -0.105 4.105
25 C -0.134 4.134
26 C -0.103 4.103
27 C -0.102 4.102
28 C -0.148 4.148
29 C -0.004 4.004
30 H 0.221 0.779
31 H 0.380 0.620
32 H 0.104 0.896
33 H 0.088 0.912
34 H 0.064 0.936
35 H 0.082 0.918
36 H 0.064 0.936
37 H 0.049 0.951
38 H 0.056 0.944
39 H 0.268 0.732
40 H 0.180 0.820
41 H 0.114 0.886
42 H 0.060 0.940
43 H 0.058 0.942
44 H 0.058 0.942
45 H 0.116 0.884
46 H 0.135 0.865
47 H 0.082 0.918
48 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.418 -7.673 3.272 8.461
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.215 4.215
3 C 0.168 3.832
4 O -0.323 6.323
5 C -0.101 4.101
6 N -0.166 5.166
7 C -0.080 4.080
8 H 0.115 0.885
9 C -0.203 4.203
10 C 0.319 3.681
11 O -0.402 6.402
12 N -0.255 5.255
13 C 0.098 3.902
14 C -0.580 4.580
15 H 0.079 0.921
16 C -0.134 4.134
17 N -0.524 5.524
18 Si 0.722 3.278
19 H -0.203 1.203
20 H -0.209 1.209
21 H -0.198 1.198
22 C 0.072 3.928
23 C -0.198 4.198
24 C -0.124 4.124
25 C -0.135 4.135
26 C -0.160 4.160
27 C -0.121 4.121
28 C -0.168 4.168
29 C -0.133 4.133
30 H 0.237 0.763
31 H 0.228 0.772
32 H 0.122 0.878
33 H 0.106 0.894
34 H 0.083 0.917
35 H 0.100 0.900
36 H 0.083 0.917
37 H 0.067 0.933
38 H 0.073 0.927
39 H 0.077 0.923
40 H 0.196 0.804
41 H 0.132 0.868
42 H 0.079 0.921
43 H 0.077 0.923
44 H 0.077 0.923
45 H 0.134 0.866
46 H 0.153 0.847
47 H 0.100 0.900
48 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 2.626 -8.063 2.985 8.990
hybrid contribution -2.514 1.001 0.646 2.782
sum 0.112 -7.061 3.631 7.941
Atomic orbital electron populations
1.25038 0.95876 0.98435 0.99492 1.23591 0.94612 1.01899 1.01428
1.19328 0.80839 0.85152 0.97855 1.86619 1.63650 1.31748 1.50286
1.24123 0.93626 0.97546 0.94814 1.68566 1.31802 1.13011 1.03182
1.22231 1.00481 0.90179 0.95130 0.88498 1.21898 1.01040 1.03780
0.93538 1.20327 0.81407 0.81409 0.84998 1.90240 1.48659 1.63214
1.38136 1.45969 1.38799 1.06994 1.33703 1.19967 0.91381 0.91195
0.87702 1.21364 0.97528 1.33440 1.05696 0.92123 1.24886 0.98810
0.95032 0.94647 1.69898 1.36496 1.33842 1.12129 0.86531 0.83489
0.79103 0.78680 1.20256 1.20861 1.19773 1.18083 0.91026 0.92237
0.91418 1.22769 0.96865 1.04212 0.95913 1.20908 0.98779 0.93743
0.98968 1.19772 1.00333 0.93992 0.99391 1.20654 0.97484 1.00121
0.97768 1.20708 0.96650 0.98906 0.95815 1.21063 1.00916 0.93309
1.01517 1.24635 0.93752 0.96977 0.97952 0.76273 0.77169 0.87813
0.89375 0.91692 0.89965 0.91702 0.93307 0.92663 0.92252 0.80396
0.86842 0.92096 0.92296 0.92258 0.86594 0.84683 0.90030 0.87989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.92 19.25 29.55 0.57 -1.35 16
2 C -0.21 -2.81 12.69 -37.12 -0.47 -3.28 16
3 C 0.21 2.90 1.80 -92.48 -0.17 2.74 16
4 O -0.52 -6.75 13.49 -35.23 -0.48 -7.23 16
5 C 0.03 0.39 6.32 -2.77 -0.02 0.37 16
6 N -0.44 -7.39 5.56 -231.74 -1.29 -8.68 16
7 C 0.03 0.57 1.27 -68.86 -0.09 0.48 16
8 H 0.10 1.90 6.50 -51.93 -0.34 1.57 16
9 C -0.15 -2.35 8.70 37.16 0.32 -2.03 16
10 C 0.53 10.92 6.58 -10.98 -0.07 10.85 16
11 O -0.52 -11.40 12.55 5.56 0.07 -11.33 16
12 N -0.54 -11.44 2.71 -114.74 -0.31 -11.75 16
13 C 0.22 4.91 4.34 -5.19 -0.02 4.88 16
14 C -0.54 -13.45 8.44 -34.44 -0.29 -13.74 16
15 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16
16 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16
17 N -0.89 -23.04 13.28 55.43 0.74 -22.30 16
18 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16
19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
20 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16
21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
22 C 0.17 3.52 6.51 -83.69 -0.54 2.97 16
23 C -0.18 -3.52 9.04 -39.40 -0.36 -3.87 16
24 C -0.11 -1.79 9.69 -39.61 -0.38 -2.18 16
25 C -0.13 -2.14 5.88 -104.59 -0.62 -2.76 16
26 C -0.10 -1.26 10.01 36.00 0.36 -0.89 16
27 C -0.10 -1.74 9.69 -39.61 -0.38 -2.12 16
28 C -0.15 -2.90 9.21 -39.40 -0.36 -3.27 16
29 C 0.00 -0.07 6.71 -2.77 -0.02 -0.08 16
30 H 0.22 1.63 7.80 -54.10 -0.42 1.21 16
31 H 0.38 3.37 9.02 45.56 0.41 3.78 16
32 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16
33 H 0.09 1.20 7.79 -51.93 -0.40 0.80 16
34 H 0.06 0.92 7.55 -51.93 -0.39 0.52 16
35 H 0.08 1.42 5.47 -51.93 -0.28 1.13 16
36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16
37 H 0.05 1.16 5.90 -51.93 -0.31 0.86 16
38 H 0.06 1.25 4.46 -51.93 -0.23 1.01 16
39 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16
40 H 0.18 3.73 4.52 -56.26 -0.25 3.47 16
41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16
42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
43 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16
44 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16
45 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16
46 H 0.14 2.77 6.05 -52.49 -0.32 2.46 16
47 H 0.08 1.36 7.64 -51.93 -0.40 0.96 16
48 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16
LS Contribution 393.71 15.07 5.93 5.93
Total: -1.00 -29.32 393.71 -8.85 -38.17
By element:
Atomic # 1 Polarization: 19.85 SS G_CDS: -5.86 Total: 13.99 kcal
Atomic # 6 Polarization: -8.97 SS G_CDS: -2.64 Total: -11.61 kcal
Atomic # 7 Polarization: -41.87 SS G_CDS: -0.86 Total: -42.73 kcal
Atomic # 8 Polarization: -18.15 SS G_CDS: -0.41 Total: -18.56 kcal
Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -29.32 -8.85 -38.17 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000934447601.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.581 kcal
(2) G-P(sol) polarization free energy of solvation -29.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.264 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.414 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds